Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00012 * 2 1 4 4 N 1.46898 * 109.47225 * 124.13040 * 3 2 1 5 5 C 1.46897 * 111.00373 * 298.50012 * 4 3 2 6 6 C 1.50702 * 109.47109 * 288.38268 * 5 4 3 7 7 H 1.08000 * 120.00179 * 4.86795 * 6 5 4 8 8 C 1.37876 * 120.00274 * 184.86798 * 6 5 4 9 9 N 1.31514 * 119.99743 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47161 * 60.00200 * 10 8 6 12 12 H 1.48496 * 109.47125 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47220 * 300.00431 * 10 8 6 14 14 C 1.46904 * 111.00030 * 62.45362 * 4 3 2 15 15 C 1.53001 * 109.46969 * 77.23801 * 14 4 3 16 16 H 1.09000 * 109.46917 * 53.50597 * 15 14 4 17 17 O 1.42902 * 109.47379 * 293.50446 * 15 14 4 18 18 C 1.52997 * 109.46933 * 173.50632 * 15 14 4 19 19 C 1.53000 * 109.47519 * 185.00009 * 18 15 14 20 20 C 1.50697 * 109.47455 * 180.02562 * 19 18 15 21 21 C 1.38240 * 120.00031 * 269.72696 * 20 19 18 22 22 C 1.38230 * 119.99786 * 179.76890 * 21 20 19 23 23 C 1.38224 * 120.00291 * 0.50265 * 22 21 20 24 24 C 1.38245 * 120.00011 * 359.75249 * 23 22 21 25 25 C 1.38229 * 119.99599 * 359.97438 * 24 23 22 26 26 H 1.07999 * 119.99789 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00529 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00529 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46968 * 4.13328 * 3 2 1 30 30 H 1.08993 * 109.47394 * 244.13496 * 3 2 1 31 31 H 1.08997 * 109.47081 * 48.37904 * 5 4 3 32 32 H 1.09001 * 109.47496 * 168.38170 * 5 4 3 33 33 H 0.96996 * 119.99795 * 179.97438 * 9 8 6 34 34 H 1.09008 * 109.46934 * 317.24337 * 14 4 3 35 35 H 1.08991 * 109.46997 * 197.24180 * 14 4 3 36 36 H 0.96697 * 113.99927 * 300.00588 * 17 15 14 37 37 H 1.09003 * 109.47343 * 65.00085 * 18 15 14 38 38 H 1.08999 * 109.47195 * 305.00407 * 18 15 14 39 39 H 1.09003 * 109.46751 * 59.99714 * 19 18 15 40 40 H 1.08999 * 109.47212 * 300.00388 * 19 18 15 41 41 H 1.07998 * 119.99449 * 359.97438 * 21 20 19 42 42 H 1.08010 * 119.99640 * 180.23229 * 22 21 20 43 43 H 1.07996 * 120.00388 * 179.72257 * 23 22 21 44 44 H 1.07996 * 119.99592 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00092 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9813 1.3406 1.1464 5 6 2.2438 1.2567 2.4141 6 6 1.5108 2.5511 2.6555 7 1 1.5210 3.3259 1.9031 8 6 0.8272 2.7464 3.8368 9 7 0.8153 1.8032 4.7532 10 14 -0.0807 4.3512 4.1363 11 1 -1.1159 4.5374 3.0879 12 1 -0.7294 4.3111 5.4715 13 1 0.8818 5.4810 4.0878 14 6 3.9856 0.2729 1.0500 15 6 5.0571 0.6710 0.0329 16 1 5.4579 1.6509 0.2921 17 8 4.4785 0.7232 -1.2727 18 6 6.1852 -0.3624 0.0498 19 6 7.3136 0.0991 -0.8747 20 6 8.4245 -0.9190 -0.8585 21 6 9.4513 -0.8071 0.0603 22 6 10.4678 -1.7436 0.0782 23 6 10.4631 -2.7863 -0.8292 24 6 9.4390 -2.8953 -1.7515 25 6 8.4196 -1.9619 -1.7658 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3574 2.1322 0.0741 30 1 2.6334 1.3956 -0.9246 31 1 1.5269 0.4372 2.3638 32 1 2.9436 1.0777 3.2304 33 1 0.3347 1.9407 5.5844 34 1 3.5043 -0.6507 0.7281 35 1 4.4487 0.1207 2.0249 36 1 4.1011 -0.1162 -1.5695 37 1 5.8031 -1.3232 -0.2950 38 1 6.5673 -0.4666 1.0653 39 1 7.6957 1.0600 -0.5299 40 1 6.9315 0.2034 -1.8902 41 1 9.4575 0.0103 0.7662 42 1 11.2681 -1.6583 0.7986 43 1 11.2596 -3.5155 -0.8181 44 1 9.4356 -3.7097 -2.4608 45 1 7.6197 -2.0467 -2.4865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292263512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = -13.484475 kcal Electronic energy + Delta-G solvation = -22481.948446 eV Core-core repulsion = 19271.352328 eV Total energy + Delta-G solvation = -3210.596118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.52746 -38.41200 -36.15858 -33.88031 -32.79277 -32.09962 -31.04765 -30.42672 -27.98049 -26.65817 -24.76583 -23.27836 -22.72844 -21.36213 -21.09466 -20.65139 -18.79662 -16.92014 -16.30103 -16.09719 -15.82522 -15.36754 -15.24324 -15.08692 -14.35652 -14.20127 -13.82425 -13.67748 -13.54697 -13.20715 -12.89302 -12.82949 -12.30534 -12.15876 -12.00384 -11.43891 -11.32569 -11.18491 -10.97330 -10.90373 -10.80877 -10.76908 -10.71449 -10.47299 -10.37793 -10.00221 -9.65057 -9.08877 -9.07526 -8.77556 -8.59938 -8.37034 -7.15407 -5.97644 -3.97768 1.20130 1.23399 2.90756 3.36142 3.39836 3.43170 3.61890 4.41956 4.52820 4.66352 4.69936 4.81923 4.92140 5.00030 5.10923 5.22517 5.34861 5.37742 5.39568 5.49344 5.53455 5.59882 5.71153 5.75639 5.81775 5.89096 5.93266 5.98754 6.16120 6.18938 6.30731 6.34184 6.36672 6.42469 6.50245 6.56059 6.85086 6.85449 7.19226 7.30553 7.36636 7.46827 7.85291 7.88624 8.15463 8.29325 8.60872 9.09127 9.65478 11.13255 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023150 B = 0.002961 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.211649 B = 9453.679643 C =10094.603247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.178 4.178 3 C 0.077 3.923 4 N -0.523 5.523 5 C 0.189 3.811 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.020 3.980 15 C 0.114 3.886 16 H 0.105 0.895 17 O -0.554 6.554 18 C -0.143 4.143 19 C -0.077 4.077 20 C -0.076 4.076 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.090 0.910 31 H -0.004 1.004 32 H 0.026 0.974 33 H 0.260 0.740 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.365 0.635 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.046 -9.091 -12.567 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.198 4.198 3 C -0.051 4.051 4 N -0.245 5.245 5 C 0.064 3.936 6 C -0.538 4.538 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.110 4.110 15 C 0.054 3.946 16 H 0.123 0.877 17 O -0.359 6.359 18 C -0.181 4.181 19 C -0.115 4.115 20 C -0.076 4.076 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.013 0.987 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.211 0.789 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.432 -8.028 -12.321 21.317 hybrid contribution -1.145 -0.794 0.575 1.507 sum 14.287 -8.822 -11.746 20.492 Atomic orbital electron populations 1.23695 0.96147 1.01018 1.01460 1.23605 0.96652 1.00017 0.99515 1.21569 0.94848 0.93561 0.95124 1.62342 1.15231 1.42759 1.04140 1.19802 0.92314 0.96743 0.84702 1.21101 1.29947 1.01020 1.01782 0.92123 1.24964 0.96840 0.96753 0.96070 1.69947 1.43289 1.33182 1.07682 0.86598 0.79917 0.83980 0.77129 1.20338 1.21451 1.20210 1.22793 0.94922 0.93850 0.99390 1.22067 0.90875 0.99423 0.82192 0.87704 1.86583 1.78214 1.37658 1.33416 1.22272 0.96090 0.99424 1.00340 1.20577 0.92979 0.96566 1.01356 1.20053 0.95952 0.96321 0.95243 1.21127 0.94343 0.99446 0.98765 1.21153 0.98683 0.94975 0.98913 1.21119 0.98892 0.98586 0.96278 1.21141 0.94731 0.99031 0.98930 1.21081 0.98733 0.94771 0.99127 0.89888 0.88521 0.88945 0.90510 0.89173 0.98667 0.95547 0.93008 0.95165 0.90960 0.78898 0.91879 0.90938 0.90871 0.90322 0.85987 0.86228 0.86397 0.86301 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 14.32 29.02 0.42 -2.85 16 2 C -0.18 -3.17 7.48 -36.02 -0.27 -3.44 16 3 C 0.08 1.47 5.45 -4.98 -0.03 1.45 16 4 N -0.52 -11.02 4.58 -237.52 -1.09 -12.11 16 5 C 0.19 4.91 4.59 -4.98 -0.02 4.89 16 6 C -0.50 -14.13 8.65 -34.44 -0.30 -14.43 16 7 H 0.06 1.71 7.32 -52.49 -0.38 1.33 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 10 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.02 0.33 4.68 -3.82 -0.02 0.31 16 15 C 0.11 1.56 3.19 -26.73 -0.09 1.47 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 17 O -0.55 -7.38 10.07 -35.23 -0.35 -7.73 16 18 C -0.14 -1.58 4.87 -26.73 -0.13 -1.71 16 19 C -0.08 -0.79 5.24 -27.88 -0.15 -0.94 16 20 C -0.08 -0.78 5.13 -104.63 -0.54 -1.32 16 21 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 22 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 23 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.16 9.70 -39.59 -0.38 -1.54 16 26 H 0.08 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.10 1.76 7.84 -52.49 -0.41 1.35 16 28 H 0.09 1.51 6.61 -52.49 -0.35 1.16 16 29 H 0.08 1.65 6.77 -51.93 -0.35 1.29 16 30 H 0.09 1.57 5.42 -51.93 -0.28 1.28 16 31 H 0.00 -0.12 6.78 -51.93 -0.35 -0.47 16 32 H 0.03 0.74 7.68 -51.93 -0.40 0.34 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.03 0.49 5.95 -51.92 -0.31 0.18 16 35 H 0.07 1.27 7.62 -51.93 -0.40 0.88 16 36 H 0.36 3.82 9.04 45.56 0.41 4.23 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -31.09 365.36 -9.98 -41.08 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.58 Total: 5.38 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -3.18 Total: -22.75 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.35 Total: -38.41 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.35 Total: -7.73 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.09 -9.98 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292263512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.591 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds