Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00012 * 2 1 4 4 N 1.46898 * 109.47225 * 124.13040 * 3 2 1 5 5 C 1.46897 * 111.00373 * 298.50012 * 4 3 2 6 6 C 1.50702 * 109.47109 * 288.38268 * 5 4 3 7 7 H 1.08000 * 120.00179 * 4.86795 * 6 5 4 8 8 C 1.37876 * 120.00274 * 184.86798 * 6 5 4 9 9 N 1.31514 * 119.99743 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47161 * 60.00200 * 10 8 6 12 12 H 1.48496 * 109.47125 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47220 * 300.00431 * 10 8 6 14 14 C 1.46904 * 111.00030 * 62.45362 * 4 3 2 15 15 C 1.53001 * 109.46969 * 77.23801 * 14 4 3 16 16 H 1.09000 * 109.46917 * 53.50597 * 15 14 4 17 17 O 1.42902 * 109.47379 * 293.50446 * 15 14 4 18 18 C 1.52997 * 109.46933 * 173.50632 * 15 14 4 19 19 C 1.53000 * 109.47519 * 185.00009 * 18 15 14 20 20 C 1.50697 * 109.47455 * 180.02562 * 19 18 15 21 21 C 1.38240 * 120.00031 * 269.72696 * 20 19 18 22 22 C 1.38230 * 119.99786 * 179.76890 * 21 20 19 23 23 C 1.38224 * 120.00291 * 0.50265 * 22 21 20 24 24 C 1.38245 * 120.00011 * 359.75249 * 23 22 21 25 25 C 1.38229 * 119.99599 * 359.97438 * 24 23 22 26 26 H 1.07999 * 119.99789 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00529 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00529 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46968 * 4.13328 * 3 2 1 30 30 H 1.08993 * 109.47394 * 244.13496 * 3 2 1 31 31 H 1.08997 * 109.47081 * 48.37904 * 5 4 3 32 32 H 1.09001 * 109.47496 * 168.38170 * 5 4 3 33 33 H 0.96996 * 119.99795 * 179.97438 * 9 8 6 34 34 H 1.09008 * 109.46934 * 317.24337 * 14 4 3 35 35 H 1.08991 * 109.46997 * 197.24180 * 14 4 3 36 36 H 0.96697 * 113.99927 * 300.00588 * 17 15 14 37 37 H 1.09003 * 109.47343 * 65.00085 * 18 15 14 38 38 H 1.08999 * 109.47195 * 305.00407 * 18 15 14 39 39 H 1.09003 * 109.46751 * 59.99714 * 19 18 15 40 40 H 1.08999 * 109.47212 * 300.00388 * 19 18 15 41 41 H 1.07998 * 119.99449 * 359.97438 * 21 20 19 42 42 H 1.08010 * 119.99640 * 180.23229 * 22 21 20 43 43 H 1.07996 * 120.00388 * 179.72257 * 23 22 21 44 44 H 1.07996 * 119.99592 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00092 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9813 1.3406 1.1464 5 6 2.2438 1.2567 2.4141 6 6 1.5108 2.5511 2.6555 7 1 1.5210 3.3259 1.9031 8 6 0.8272 2.7464 3.8368 9 7 0.8153 1.8032 4.7532 10 14 -0.0807 4.3512 4.1363 11 1 -1.1159 4.5374 3.0879 12 1 -0.7294 4.3111 5.4715 13 1 0.8818 5.4810 4.0878 14 6 3.9856 0.2729 1.0500 15 6 5.0571 0.6710 0.0329 16 1 5.4579 1.6509 0.2921 17 8 4.4785 0.7232 -1.2727 18 6 6.1852 -0.3624 0.0498 19 6 7.3136 0.0991 -0.8747 20 6 8.4245 -0.9190 -0.8585 21 6 9.4513 -0.8071 0.0603 22 6 10.4678 -1.7436 0.0782 23 6 10.4631 -2.7863 -0.8292 24 6 9.4390 -2.8953 -1.7515 25 6 8.4196 -1.9619 -1.7658 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3574 2.1322 0.0741 30 1 2.6334 1.3956 -0.9246 31 1 1.5269 0.4372 2.3638 32 1 2.9436 1.0777 3.2304 33 1 0.3347 1.9407 5.5844 34 1 3.5043 -0.6507 0.7281 35 1 4.4487 0.1207 2.0249 36 1 4.1011 -0.1162 -1.5695 37 1 5.8031 -1.3232 -0.2950 38 1 6.5673 -0.4666 1.0653 39 1 7.6957 1.0600 -0.5299 40 1 6.9315 0.2034 -1.8902 41 1 9.4575 0.0103 0.7662 42 1 11.2681 -1.6583 0.7986 43 1 11.2596 -3.5155 -0.8181 44 1 9.4356 -3.7097 -2.4608 45 1 7.6197 -2.0467 -2.4865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292263512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = -32.213575 kcal Electronic energy + Delta-G solvation = -22482.760601 eV Core-core repulsion = 19271.352328 eV Total energy + Delta-G solvation = -3211.408273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32092 -39.67327 -37.53563 -34.86476 -34.68749 -33.67138 -31.72205 -31.49715 -29.54726 -28.19021 -26.27796 -24.69884 -23.40980 -22.64273 -22.46537 -21.63004 -20.28606 -18.37222 -17.59720 -17.24578 -17.05107 -16.90480 -16.21515 -16.08944 -15.97583 -15.52213 -15.20426 -14.96389 -14.32787 -14.25077 -14.03003 -14.01614 -13.80048 -13.49465 -13.16744 -12.89600 -12.76592 -12.57190 -12.54312 -12.26074 -12.14042 -12.04091 -11.96182 -11.83138 -11.66796 -11.59732 -11.44279 -10.63804 -10.57383 -10.05335 -9.78012 -9.52287 -8.85459 -8.17289 -6.25880 0.49655 0.54195 1.39758 1.42528 1.47528 1.50465 2.41112 2.90863 3.14538 3.32342 3.60642 3.88836 3.98103 4.08008 4.10593 4.20713 4.24725 4.30457 4.32092 4.41228 4.51121 4.63821 4.68491 4.70235 4.73876 4.82111 4.90894 4.97190 5.03895 5.16886 5.21059 5.23851 5.24864 5.34784 5.37509 5.42648 5.62655 5.66774 5.67768 5.74900 5.80449 5.94169 6.12939 6.18104 6.47405 6.71247 6.90029 6.94735 7.42765 8.93006 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023150 B = 0.002961 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.211649 B = 9453.679643 C =10094.603247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.183 4.183 3 C 0.082 3.918 4 N -0.534 5.534 5 C 0.207 3.793 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.020 3.980 15 C 0.130 3.870 16 H 0.088 0.912 17 O -0.560 6.560 18 C -0.130 4.130 19 C -0.069 4.069 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.127 4.127 25 C -0.130 4.130 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.048 0.952 30 H 0.113 0.887 31 H -0.027 1.027 32 H -0.004 1.004 33 H 0.263 0.737 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.380 0.620 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.626 -9.693 -13.842 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.203 4.203 3 C -0.046 4.046 4 N -0.256 5.256 5 C 0.081 3.919 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.787 3.213 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.109 4.109 15 C 0.070 3.930 16 H 0.106 0.894 17 O -0.367 6.367 18 C -0.168 4.168 19 C -0.107 4.107 20 C -0.090 4.090 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.148 4.148 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.066 0.934 30 H 0.130 0.870 31 H -0.009 1.009 32 H 0.015 0.985 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.021 -8.639 -13.626 22.737 hybrid contribution -1.284 -0.664 0.929 1.718 sum 14.737 -9.303 -12.697 21.563 Atomic orbital electron populations 1.23853 0.96329 1.01574 1.00959 1.23625 0.96808 0.99970 0.99884 1.21519 0.94491 0.93509 0.95055 1.62248 1.15576 1.45051 1.02714 1.19409 0.91194 0.95029 0.86286 1.21410 1.30334 1.01779 1.01883 0.92595 1.25831 0.97628 1.00275 0.95784 1.70070 1.44158 1.35219 1.08152 0.85539 0.78778 0.79659 0.77274 1.19401 1.20832 1.19488 1.22906 0.94616 0.93305 1.00064 1.21770 0.90398 0.99349 0.81457 0.89380 1.86544 1.78337 1.39107 1.32707 1.22117 0.95291 0.98914 1.00499 1.20467 0.92688 0.96470 1.01037 1.20102 0.96170 0.96764 0.95965 1.21315 0.94855 1.00064 0.99111 1.21429 0.98908 0.94902 0.99439 1.21455 0.99397 0.98763 0.95831 1.21457 0.94417 0.99371 0.99271 1.21303 0.99438 0.94762 0.99253 0.87637 0.89774 0.86946 0.93354 0.86962 1.00911 0.98547 0.92850 0.93824 0.92210 0.77108 0.90725 0.91381 0.91299 0.90112 0.85717 0.84650 0.84325 0.84300 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.52 14.32 67.78 0.97 -5.55 16 2 C -0.18 -6.35 7.48 25.65 0.19 -6.16 16 3 C 0.08 3.11 5.45 85.56 0.47 3.58 16 4 N -0.53 -22.77 4.58 -905.37 -4.15 -26.92 16 5 C 0.21 11.06 4.59 85.56 0.39 11.46 16 6 C -0.52 -29.76 8.65 25.60 0.22 -29.54 16 7 H 0.06 3.21 7.32 -2.91 -0.02 3.19 16 8 C 0.00 0.14 5.46 84.65 0.46 0.60 16 9 N -0.94 -57.04 13.29 21.45 0.28 -56.75 16 10 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 14 C 0.02 0.66 4.68 86.30 0.40 1.06 16 15 C 0.13 3.43 3.19 30.59 0.10 3.53 16 16 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 17 O -0.56 -13.83 10.07 -148.98 -1.50 -15.34 16 18 C -0.13 -2.71 4.87 30.59 0.15 -2.56 16 19 C -0.07 -1.34 5.24 29.85 0.16 -1.19 16 20 C -0.09 -1.76 5.13 -19.87 -0.10 -1.86 16 21 C -0.14 -2.61 9.70 22.27 0.22 -2.39 16 22 C -0.13 -2.19 10.05 22.26 0.22 -1.97 16 23 C -0.14 -2.14 10.05 22.27 0.22 -1.91 16 24 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 25 C -0.13 -2.29 9.70 22.27 0.22 -2.08 16 26 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 27 H 0.08 3.09 7.84 -2.91 -0.02 3.06 16 28 H 0.11 3.44 6.61 -2.91 -0.02 3.42 16 29 H 0.05 2.10 6.77 -2.39 -0.02 2.09 16 30 H 0.11 3.76 5.42 -2.39 -0.01 3.74 16 31 H -0.03 -1.52 6.78 -2.39 -0.02 -1.54 16 32 H 0.00 -0.21 7.68 -2.39 -0.02 -0.23 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.36 16 34 H 0.04 1.35 5.95 -2.38 -0.01 1.33 16 35 H 0.06 2.14 7.62 -2.39 -0.02 2.13 16 36 H 0.38 6.90 9.04 -74.06 -0.67 6.23 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 40 H 0.08 1.53 7.77 -2.39 -0.02 1.51 16 41 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 42 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 45 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -67.20 365.36 1.46 -65.74 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.28 Total: 22.79 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 4.51 Total: -36.78 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -3.86 Total: -83.67 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.50 Total: -15.34 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.20 1.46 -65.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292263512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.528 kcal (2) G-P(sol) polarization free energy of solvation -67.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds