Wall clock time and date at job start Tue Mar 31 2020 06:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99524 * 2 1 4 4 N 1.46897 * 109.47526 * 123.00139 * 3 2 1 5 5 C 1.46908 * 110.99790 * 63.23244 * 4 3 2 6 6 C 1.50693 * 109.47230 * 66.04813 * 5 4 3 7 7 H 1.08007 * 120.00034 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00140 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00108 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47042 * 60.00091 * 10 8 6 12 12 H 1.48504 * 109.47028 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46896 * 299.99492 * 10 8 6 14 14 C 1.46903 * 110.99937 * 299.28221 * 4 3 2 15 15 C 1.50694 * 109.46913 * 288.00563 * 14 4 3 16 16 C 1.38288 * 119.97310 * 272.43934 * 15 14 4 17 17 C 1.38242 * 120.11162 * 180.02562 * 16 15 14 18 18 C 1.38168 * 120.05564 * 359.67899 * 17 16 15 19 19 C 1.38712 * 119.94351 * 0.57467 * 18 17 16 20 20 O 1.35894 * 120.05263 * 179.72240 * 19 18 17 21 21 C 1.42901 * 117.00370 * 359.72439 * 20 19 18 22 22 C 1.53001 * 109.46946 * 180.02562 * 21 20 19 23 23 C 1.53004 * 109.46988 * 180.02562 * 22 21 20 24 24 C 1.38131 * 119.97408 * 92.41723 * 15 14 4 25 25 H 1.08001 * 120.00148 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99998 * 180.02562 * 1 2 3 27 27 H 1.07987 * 120.00215 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47848 * 2.99792 * 3 2 1 29 29 H 1.09007 * 109.46764 * 243.00321 * 3 2 1 30 30 H 1.09000 * 109.46811 * 186.05282 * 5 4 3 31 31 H 1.08999 * 109.46695 * 306.04907 * 5 4 3 32 32 H 0.96992 * 120.00421 * 180.02562 * 9 8 6 33 33 H 1.08992 * 109.47019 * 168.00753 * 14 4 3 34 34 H 1.09005 * 109.46979 * 48.00546 * 14 4 3 35 35 H 1.07997 * 119.94538 * 0.02562 * 16 15 14 36 36 H 1.08007 * 119.97309 * 179.97438 * 17 16 15 37 37 H 1.08000 * 120.02675 * 180.29476 * 18 17 16 38 38 H 1.09001 * 109.47085 * 299.99605 * 21 20 19 39 39 H 1.08993 * 109.46843 * 60.00254 * 21 20 19 40 40 H 1.09003 * 109.46985 * 299.99287 * 22 21 20 41 41 H 1.08988 * 109.47716 * 59.99723 * 22 21 20 42 42 H 1.09004 * 109.46726 * 299.99700 * 23 22 21 43 43 H 1.09001 * 109.47336 * 59.99405 * 23 22 21 44 44 H 1.09001 * 109.47085 * 179.97438 * 23 22 21 45 45 H 1.08000 * 120.02074 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9616 1.3522 1.1615 5 6 3.9788 0.2952 1.0835 6 6 4.8911 0.5614 -0.0861 7 1 4.7314 1.4292 -0.7090 8 6 5.9295 -0.3029 -0.3611 9 7 6.1243 -1.3594 0.3976 10 14 7.0608 0.0274 -1.8105 11 1 7.7268 1.3422 -1.6289 12 1 8.0890 -1.0411 -1.8894 13 1 6.2661 0.0439 -3.0648 14 6 2.2039 1.2620 2.4168 15 6 1.4604 2.5521 2.6485 16 6 2.0792 3.5969 3.3103 17 6 1.3996 4.7814 3.5249 18 6 0.1022 4.9266 3.0726 19 6 -0.5226 3.8783 2.4132 20 8 -1.8005 4.0168 1.9723 21 6 -2.4430 5.2674 2.2275 22 6 -3.8646 5.2351 1.6627 23 6 -4.5523 6.5744 1.9353 24 6 0.1615 2.6903 2.1994 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3564 2.1330 0.0537 29 1 2.6491 1.3866 -0.9158 30 1 4.5622 0.2838 2.0041 31 1 3.4903 -0.6701 0.9509 32 1 6.8550 -1.9672 0.2044 33 1 2.8912 1.0851 3.2440 34 1 1.4922 0.4388 2.3533 35 1 3.0951 3.4872 3.6601 36 1 1.8850 5.5958 4.0424 37 1 -0.4266 5.8540 3.2363 38 1 -2.4836 5.4424 3.3026 39 1 -1.8801 6.0692 1.7498 40 1 -3.8245 5.0600 0.5876 41 1 -4.4274 4.4334 2.1406 42 1 -4.5924 6.7499 3.0104 43 1 -3.9894 7.3759 1.4571 44 1 -5.5649 6.5515 1.5325 45 1 -0.3213 1.8741 1.6827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292821441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:56 Heat of formation + Delta-G solvation = 1.400489 kcal Electronic energy + Delta-G solvation = -22747.289674 eV Core-core repulsion = 19537.339016 eV Total energy + Delta-G solvation = -3209.950658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10700 -38.21347 -36.69027 -34.15787 -32.93940 -32.37475 -31.01885 -29.82487 -27.19270 -26.67091 -26.12195 -23.81723 -22.47041 -21.93913 -21.21369 -20.43298 -18.93133 -17.48111 -16.42201 -16.26036 -16.07743 -15.76330 -15.07036 -14.81286 -14.53637 -14.31944 -13.98086 -13.71586 -13.57495 -13.15607 -12.98146 -12.52047 -12.41989 -12.34043 -12.10458 -11.52634 -11.46331 -11.40481 -11.25516 -11.04436 -10.82719 -10.75901 -10.72424 -10.67545 -10.60168 -10.34143 -9.83420 -9.28879 -8.85223 -8.60415 -8.41239 -7.99067 -7.21993 -6.01710 -4.02651 1.53187 1.68203 2.77001 3.14150 3.34675 3.38534 3.41759 3.96564 4.44750 4.58763 4.59398 4.91003 4.94712 4.99667 5.11105 5.13800 5.20642 5.32477 5.33416 5.36205 5.48633 5.60945 5.61308 5.64961 5.71128 5.74538 5.82369 5.87902 5.99189 6.11805 6.20216 6.32080 6.46061 6.47548 6.64372 6.67788 6.94183 6.98786 7.11211 7.14738 7.37757 7.38536 7.53550 7.80971 8.08882 8.19521 8.54496 9.04388 9.61257 11.08981 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.003314 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.432764 B = 8446.742605 C = 8835.183033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C 0.083 3.917 4 N -0.521 5.521 5 C 0.190 3.810 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.084 3.916 15 C -0.019 4.019 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.218 4.218 19 C 0.123 3.877 20 O -0.319 6.319 21 C 0.060 3.940 22 C -0.124 4.124 23 C -0.149 4.149 24 C -0.150 4.150 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.029 0.971 31 H -0.002 1.002 32 H 0.261 0.739 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.483 12.415 5.362 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.178 4.178 3 C -0.045 4.045 4 N -0.244 5.244 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.044 4.044 15 C -0.020 4.020 16 C -0.154 4.154 17 C -0.103 4.103 18 C -0.237 4.237 19 C 0.078 3.922 20 O -0.233 6.233 21 C -0.015 4.015 22 C -0.162 4.162 23 C -0.207 4.207 24 C -0.169 4.169 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.016 0.984 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.199 12.574 5.283 21.951 hybrid contribution 0.339 -0.512 -0.666 0.906 sum -16.861 12.062 4.616 21.239 Atomic orbital electron populations 1.23731 0.95999 1.00843 1.04794 1.23904 0.96181 1.01517 0.96204 1.21340 0.94443 0.92510 0.96187 1.62417 1.12587 1.50506 0.98863 1.19799 0.88524 0.87236 0.97917 1.21105 1.12076 1.09092 1.12129 0.91945 1.24963 0.97630 0.95101 0.96821 1.69940 1.31438 1.13667 1.38830 0.86583 0.80367 0.77815 0.82783 1.20185 1.21414 1.20297 1.21091 0.96150 0.92088 0.95052 1.19778 0.92150 0.96221 0.93860 1.20993 1.00147 0.93017 1.01211 1.20879 0.93669 0.97409 0.98346 1.21101 0.97488 0.98847 1.06296 1.18912 0.83583 0.94593 0.95120 1.86032 1.24652 1.36617 1.75974 1.22800 0.93493 0.85051 1.00187 1.21483 0.93591 0.98791 1.02320 1.21690 1.00655 0.96369 1.01953 1.20482 0.94835 0.96609 1.04952 0.89019 0.89431 0.87029 0.91978 0.89143 0.95254 0.98404 0.92902 0.90334 0.94107 0.85703 0.86190 0.86226 0.92309 0.92214 0.90805 0.90879 0.92435 0.92379 0.91807 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.38 13.43 29.01 0.39 -2.99 16 2 C -0.16 -2.92 7.43 -36.03 -0.27 -3.18 16 3 C 0.08 1.64 5.39 -4.98 -0.03 1.62 16 4 N -0.52 -11.13 4.65 -238.96 -1.11 -12.24 16 5 C 0.19 4.83 4.55 -4.98 -0.02 4.80 16 6 C -0.51 -13.98 8.47 -34.44 -0.29 -14.27 16 7 H 0.06 1.72 7.12 -52.48 -0.37 1.35 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 10 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.08 1.54 4.98 -4.98 -0.02 1.52 16 15 C -0.02 -0.32 4.99 -104.65 -0.52 -0.84 16 16 C -0.13 -2.06 9.71 -39.56 -0.38 -2.44 16 17 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 18 C -0.22 -2.84 9.04 -39.43 -0.36 -3.19 16 19 C 0.12 1.78 6.69 -39.22 -0.26 1.52 16 20 O -0.32 -4.27 10.14 -19.41 -0.20 -4.46 16 21 C 0.06 0.58 4.74 37.16 0.18 0.75 16 22 C -0.12 -0.97 6.30 -26.73 -0.17 -1.14 16 23 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 24 C -0.15 -2.36 8.20 -39.43 -0.32 -2.69 16 25 H 0.09 1.36 6.55 -52.49 -0.34 1.02 16 26 H 0.09 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.11 2.28 6.80 -52.49 -0.36 1.92 16 28 H 0.06 1.15 6.08 -51.93 -0.32 0.83 16 29 H 0.09 1.95 6.78 -51.93 -0.35 1.59 16 30 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 31 H 0.00 -0.05 6.31 -51.93 -0.33 -0.38 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 34 H 0.04 0.74 6.66 -51.93 -0.35 0.40 16 35 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 38 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 39 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.57 8.14 -51.94 -0.42 0.15 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.13 2.04 5.70 -52.49 -0.30 1.74 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -29.68 360.69 -9.54 -39.21 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.17 Total: 2.24 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.21 Total: -21.08 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.37 Total: -37.94 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.68 -9.54 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292821441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.615 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds