Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47411 * 2 1 4 4 N 1.46499 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.46499 * 120.00002 * 76.74848 * 4 3 2 6 6 C 1.52991 * 109.47282 * 89.99613 * 5 4 3 7 7 C 1.53002 * 109.47502 * 64.99699 * 6 5 4 8 8 C 1.53001 * 109.47073 * 185.00008 * 6 5 4 9 9 C 1.34775 * 119.99885 * 256.74258 * 4 3 2 10 10 O 1.21551 * 119.99893 * 182.14832 * 9 4 3 11 11 C 1.47887 * 119.99994 * 2.14455 * 9 4 3 12 12 C 1.39918 * 120.02984 * 23.38797 * 11 9 4 13 13 C 1.38318 * 120.36428 * 179.73705 * 12 11 9 14 14 C 1.37758 * 120.40822 * 0.56809 * 13 12 11 15 15 C 1.40749 * 120.04285 * 359.69107 * 14 13 12 16 16 C 1.41428 * 120.17932 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99989 * 146.94672 * 16 15 14 18 18 C 1.39940 * 120.00020 * 326.94713 * 16 15 14 19 19 N 1.30835 * 119.99972 * 163.68901 * 18 16 15 20 20 Si 1.86800 * 120.00044 * 343.69417 * 18 16 15 21 21 H 1.48496 * 109.47202 * 86.84668 * 20 18 16 22 22 H 1.48503 * 109.46745 * 206.84745 * 20 18 16 23 23 H 1.48497 * 109.46789 * 326.84230 * 20 18 16 24 24 C 1.38999 * 120.02327 * 203.66471 * 11 9 4 25 25 H 1.08993 * 109.46960 * 59.99525 * 1 2 3 26 26 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46694 * 299.99382 * 1 2 3 28 28 H 1.09006 * 109.46985 * 240.00057 * 2 1 3 29 29 H 1.09004 * 109.47386 * 120.00283 * 2 1 3 30 30 H 1.09003 * 109.46509 * 60.00180 * 3 2 1 31 31 H 1.08999 * 109.46626 * 300.00431 * 3 2 1 32 32 H 1.08997 * 109.46782 * 329.99336 * 5 4 3 33 33 H 1.09001 * 109.46515 * 209.99827 * 5 4 3 34 34 H 1.09003 * 109.47095 * 304.99941 * 6 5 4 35 35 H 1.08993 * 109.46935 * 300.00565 * 7 6 5 36 36 H 1.09003 * 109.46748 * 60.00029 * 7 6 5 37 37 H 1.08998 * 109.47175 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47275 * 59.99997 * 8 6 5 39 39 H 1.09007 * 109.47210 * 179.97438 * 8 6 5 40 40 H 1.09003 * 109.47105 * 299.99927 * 8 6 5 41 41 H 1.08003 * 119.81174 * 0.02562 * 12 11 9 42 42 H 1.07996 * 119.79756 * 180.27856 * 13 12 11 43 43 H 1.08006 * 119.98043 * 179.71926 * 14 13 12 44 44 H 0.96994 * 119.99699 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.20583 * 359.95982 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.2370 1.1518 -1.2359 6 6 4.4917 2.4546 -1.9964 7 6 5.4218 3.3507 -1.1761 8 6 5.1446 2.1394 -3.3437 9 6 4.1794 1.7099 1.1352 10 8 5.3943 1.7484 1.1260 11 6 3.4413 1.9567 2.3927 12 6 2.1446 1.4561 2.5533 13 6 1.4500 1.6782 3.7286 14 6 2.0218 2.4045 4.7500 15 6 3.3232 2.9207 4.6047 16 6 3.9133 3.6662 5.6517 17 1 4.9792 3.6138 5.8176 18 6 3.1161 4.4719 6.4725 19 7 3.5821 4.9041 7.6161 20 14 1.3866 4.9300 5.9355 21 1 0.4385 3.8702 6.3631 22 1 1.0003 6.2210 6.5595 23 1 1.3464 5.0632 4.4570 24 6 4.0329 2.6911 3.4138 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 3.6477 0.4775 -1.8573 33 1 5.1895 0.6814 -0.9916 34 1 3.5452 2.9691 -2.1629 35 1 4.9566 3.5751 -0.2163 36 1 6.3682 2.8362 -1.0097 37 1 5.6036 4.2786 -1.7182 38 1 4.4820 1.5011 -3.9282 39 1 5.3257 3.0676 -3.8858 40 1 6.0911 1.6249 -3.1773 41 1 1.6854 0.8892 1.7569 42 1 0.4513 1.2838 3.8445 43 1 1.4715 2.5776 5.6630 44 1 3.0294 5.4622 8.1851 45 1 5.0321 3.0827 3.2928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298595951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = -6.881135 kcal Electronic energy + Delta-G solvation = -23749.891080 eV Core-core repulsion = 20539.581304 eV Total energy + Delta-G solvation = -3210.309776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19257 -37.54305 -36.45973 -35.40408 -33.54478 -32.37020 -30.68485 -29.99699 -27.06988 -26.98456 -25.82253 -25.09589 -22.50081 -21.67267 -20.83786 -20.18063 -19.02913 -17.66858 -16.60536 -16.14005 -15.71105 -15.26635 -15.06188 -14.59841 -14.00836 -13.86295 -13.68604 -13.48695 -13.07277 -12.83058 -12.73947 -12.71123 -12.30636 -12.21593 -11.88466 -11.83348 -11.72179 -11.48950 -11.24956 -11.06789 -11.00322 -10.88431 -10.75039 -10.63783 -10.57666 -10.29062 -9.88438 -9.66373 -9.30179 -9.04470 -8.38460 -7.86210 -7.67129 -6.97152 -4.54228 1.95853 2.49568 3.05596 3.16110 3.22685 3.30674 3.58452 3.93127 4.45669 4.80227 4.87783 4.91427 5.03760 5.10907 5.13593 5.28800 5.38722 5.42693 5.51034 5.63709 5.66293 5.73199 5.78664 5.89851 5.91213 5.96766 5.99033 6.00668 6.06496 6.10493 6.15527 6.32227 6.37209 6.41365 6.60210 6.65415 6.70058 6.84104 7.01865 7.23359 7.39619 7.50543 7.72388 7.77770 7.98629 8.30461 8.54156 8.69875 8.74311 10.05701 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.004930 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.730721 B = 5678.310921 C = 6615.560149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.072 3.928 4 N -0.610 5.610 5 C 0.121 3.879 6 C -0.111 4.111 7 C -0.139 4.139 8 C -0.143 4.143 9 C 0.563 3.437 10 O -0.541 6.541 11 C -0.107 4.107 12 C -0.251 4.251 13 C -0.086 4.086 14 C -0.223 4.223 15 C 0.084 3.916 16 C -0.448 4.448 17 H 0.093 0.907 18 C 0.083 3.917 19 N -0.809 5.809 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.290 1.290 23 H -0.249 1.249 24 C -0.138 4.138 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.286 0.714 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.988 -5.545 -16.193 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C -0.051 4.051 4 N -0.343 5.343 5 C -0.002 4.002 6 C -0.131 4.131 7 C -0.196 4.196 8 C -0.201 4.201 9 C 0.355 3.645 10 O -0.419 6.419 11 C -0.110 4.110 12 C -0.270 4.270 13 C -0.104 4.104 14 C -0.243 4.243 15 C 0.081 3.919 16 C -0.476 4.476 17 H 0.111 0.889 18 C -0.135 4.135 19 N -0.433 5.433 20 Si 0.739 3.261 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.173 1.173 24 C -0.158 4.158 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.147 0.853 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.157 0.843 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.285 -5.363 -15.939 17.628 hybrid contribution -0.813 0.247 -0.059 0.852 sum -6.098 -5.117 -15.998 17.869 Atomic orbital electron populations 1.21720 0.95103 1.01851 1.02213 1.22013 0.96266 0.97653 1.02643 1.22687 0.79862 0.97127 1.05391 1.47786 1.06512 1.70954 1.08998 1.21464 0.97560 0.96114 0.85049 1.21503 0.99419 0.97012 0.95149 1.21804 0.99784 0.98237 0.99790 1.21771 1.00674 1.01396 0.96245 1.18829 0.87042 0.75126 0.83483 1.90699 1.13843 1.51421 1.85955 1.19452 0.95176 1.02746 0.93620 1.21679 0.95428 1.09958 0.99922 1.20598 0.98103 0.98194 0.93541 1.21388 0.98456 1.04928 0.99510 1.17705 0.91304 0.91385 0.91501 1.19486 0.97382 1.22111 1.08643 0.88916 1.26129 1.00344 0.94197 0.92830 1.69681 1.39090 1.26646 1.07887 0.86351 0.81347 0.77125 0.81312 1.19171 1.21716 1.17255 1.21286 1.00287 1.02149 0.92063 0.92720 0.92572 0.92007 0.91962 0.90639 0.85265 0.91874 0.91200 0.90126 0.91489 0.92241 0.92243 0.93810 0.92940 0.92643 0.92542 0.84315 0.88337 0.87539 0.90390 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.83 37.16 0.37 -1.02 16 2 C -0.15 -1.61 5.19 -26.73 -0.14 -1.75 16 3 C 0.07 0.92 4.86 -4.04 -0.02 0.90 16 4 N -0.61 -9.29 2.39 -174.79 -0.42 -9.71 16 5 C 0.12 1.56 4.95 -4.05 -0.02 1.54 16 6 C -0.11 -1.34 3.13 -90.62 -0.28 -1.62 16 7 C -0.14 -2.02 7.91 37.16 0.29 -1.73 16 8 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 9 C 0.56 11.02 6.17 -12.31 -0.08 10.95 16 10 O -0.54 -11.89 14.20 5.32 0.08 -11.81 16 11 C -0.11 -2.27 5.60 -105.04 -0.59 -2.86 16 12 C -0.25 -4.75 7.50 -38.92 -0.29 -5.04 16 13 C -0.09 -1.72 10.01 -39.73 -0.40 -2.12 16 14 C -0.22 -5.16 7.29 -38.81 -0.28 -5.44 16 15 C 0.08 2.11 5.03 -106.87 -0.54 1.57 16 16 C -0.45 -12.09 9.56 -37.73 -0.36 -12.45 16 17 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 18 C 0.08 2.17 5.41 -17.34 -0.09 2.07 16 19 N -0.81 -21.45 13.93 55.55 0.77 -20.68 16 20 Si 0.91 20.32 24.71 -169.99 -4.20 16.12 16 21 H -0.27 -5.66 6.35 56.52 0.36 -5.30 16 22 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.25 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.14 -3.31 9.33 -38.44 -0.36 -3.67 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 28 H 0.06 0.62 7.54 -51.93 -0.39 0.23 16 29 H 0.08 0.95 7.00 -51.93 -0.36 0.59 16 30 H 0.13 1.90 4.06 -52.39 -0.21 1.69 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.73 7.44 -51.93 -0.39 0.34 16 33 H 0.08 1.16 7.45 -51.93 -0.39 0.77 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.04 6.02 -51.93 -0.31 0.73 16 36 H 0.06 0.92 7.96 -51.93 -0.41 0.50 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.14 2.15 1.89 -52.48 -0.10 2.05 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 2.45 4.78 -52.48 -0.25 2.20 16 44 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 45 H 0.11 2.75 7.82 -52.49 -0.41 2.34 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -28.24 346.17 -8.04 -36.28 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.04 Total: 6.27 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -2.45 Total: -21.69 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 0.36 Total: -30.38 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.20 Total: 16.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.24 -8.04 -36.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298595951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.403 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds