Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47411 * 2 1 4 4 N 1.46499 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.46499 * 120.00002 * 76.74848 * 4 3 2 6 6 C 1.52991 * 109.47282 * 89.99613 * 5 4 3 7 7 C 1.53002 * 109.47502 * 64.99699 * 6 5 4 8 8 C 1.53001 * 109.47073 * 185.00008 * 6 5 4 9 9 C 1.34775 * 119.99885 * 256.74258 * 4 3 2 10 10 O 1.21551 * 119.99893 * 182.14832 * 9 4 3 11 11 C 1.47887 * 119.99994 * 2.14455 * 9 4 3 12 12 C 1.39918 * 120.02984 * 23.38797 * 11 9 4 13 13 C 1.38318 * 120.36428 * 179.73705 * 12 11 9 14 14 C 1.37758 * 120.40822 * 0.56809 * 13 12 11 15 15 C 1.40749 * 120.04285 * 359.69107 * 14 13 12 16 16 C 1.41428 * 120.17932 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99989 * 146.94672 * 16 15 14 18 18 C 1.39940 * 120.00020 * 326.94713 * 16 15 14 19 19 N 1.30835 * 119.99972 * 163.68901 * 18 16 15 20 20 Si 1.86800 * 120.00044 * 343.69417 * 18 16 15 21 21 H 1.48496 * 109.47202 * 86.84668 * 20 18 16 22 22 H 1.48503 * 109.46745 * 206.84745 * 20 18 16 23 23 H 1.48497 * 109.46789 * 326.84230 * 20 18 16 24 24 C 1.38999 * 120.02327 * 203.66471 * 11 9 4 25 25 H 1.08993 * 109.46960 * 59.99525 * 1 2 3 26 26 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46694 * 299.99382 * 1 2 3 28 28 H 1.09006 * 109.46985 * 240.00057 * 2 1 3 29 29 H 1.09004 * 109.47386 * 120.00283 * 2 1 3 30 30 H 1.09003 * 109.46509 * 60.00180 * 3 2 1 31 31 H 1.08999 * 109.46626 * 300.00431 * 3 2 1 32 32 H 1.08997 * 109.46782 * 329.99336 * 5 4 3 33 33 H 1.09001 * 109.46515 * 209.99827 * 5 4 3 34 34 H 1.09003 * 109.47095 * 304.99941 * 6 5 4 35 35 H 1.08993 * 109.46935 * 300.00565 * 7 6 5 36 36 H 1.09003 * 109.46748 * 60.00029 * 7 6 5 37 37 H 1.08998 * 109.47175 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47275 * 59.99997 * 8 6 5 39 39 H 1.09007 * 109.47210 * 179.97438 * 8 6 5 40 40 H 1.09003 * 109.47105 * 299.99927 * 8 6 5 41 41 H 1.08003 * 119.81174 * 0.02562 * 12 11 9 42 42 H 1.07996 * 119.79756 * 180.27856 * 13 12 11 43 43 H 1.08006 * 119.98043 * 179.71926 * 14 13 12 44 44 H 0.96994 * 119.99699 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.20583 * 359.95982 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.2370 1.1518 -1.2359 6 6 4.4917 2.4546 -1.9964 7 6 5.4218 3.3507 -1.1761 8 6 5.1446 2.1394 -3.3437 9 6 4.1794 1.7099 1.1352 10 8 5.3943 1.7484 1.1260 11 6 3.4413 1.9567 2.3927 12 6 2.1446 1.4561 2.5533 13 6 1.4500 1.6782 3.7286 14 6 2.0218 2.4045 4.7500 15 6 3.3232 2.9207 4.6047 16 6 3.9133 3.6662 5.6517 17 1 4.9792 3.6138 5.8176 18 6 3.1161 4.4719 6.4725 19 7 3.5821 4.9041 7.6161 20 14 1.3866 4.9300 5.9355 21 1 0.4385 3.8702 6.3631 22 1 1.0003 6.2210 6.5595 23 1 1.3464 5.0632 4.4570 24 6 4.0329 2.6911 3.4138 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 3.6477 0.4775 -1.8573 33 1 5.1895 0.6814 -0.9916 34 1 3.5452 2.9691 -2.1629 35 1 4.9566 3.5751 -0.2163 36 1 6.3682 2.8362 -1.0097 37 1 5.6036 4.2786 -1.7182 38 1 4.4820 1.5011 -3.9282 39 1 5.3257 3.0676 -3.8858 40 1 6.0911 1.6249 -3.1773 41 1 1.6854 0.8892 1.7569 42 1 0.4513 1.2838 3.8445 43 1 1.4715 2.5776 5.6630 44 1 3.0294 5.4622 8.1851 45 1 5.0321 3.0827 3.2928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298595951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = -22.152644 kcal Electronic energy + Delta-G solvation = -23750.553302 eV Core-core repulsion = 20539.581304 eV Total energy + Delta-G solvation = -3210.971998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62718 -39.22078 -37.80234 -36.53308 -35.35704 -33.41903 -32.44995 -31.72770 -28.22567 -28.04430 -26.98597 -26.82011 -24.02812 -22.61415 -22.59309 -21.44619 -20.35786 -19.34294 -18.05334 -17.76727 -17.16053 -16.79449 -16.42749 -15.74391 -15.40293 -15.32708 -15.25822 -14.59266 -14.51932 -14.42499 -14.10430 -13.82365 -13.78271 -13.31451 -13.16852 -12.96631 -12.89564 -12.72838 -12.64391 -12.57066 -12.36224 -12.13473 -11.93692 -11.82252 -11.67475 -11.65393 -11.50673 -11.36879 -11.07553 -10.65146 -9.75373 -9.51981 -9.45378 -8.89607 -6.56351 0.22037 0.71964 1.25133 1.40030 1.46641 1.92141 2.06074 2.13040 2.62510 3.39689 3.61855 3.88732 3.95896 4.00728 4.16271 4.16529 4.27201 4.41821 4.47547 4.54661 4.56781 4.67240 4.67813 4.77273 4.81852 4.82946 4.87822 4.90920 4.96470 5.06528 5.06959 5.16252 5.20096 5.25475 5.28425 5.39385 5.42398 5.43941 5.50623 5.64918 5.67879 5.75744 5.84448 6.10794 6.29466 6.42920 6.65732 6.74301 7.22512 8.20115 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018087 B = 0.004930 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.730721 B = 5678.310921 C = 6615.560149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.064 3.936 4 N -0.598 5.598 5 C 0.117 3.883 6 C -0.106 4.106 7 C -0.136 4.136 8 C -0.137 4.137 9 C 0.557 3.443 10 O -0.578 6.578 11 C -0.114 4.114 12 C -0.215 4.215 13 C -0.085 4.085 14 C -0.225 4.225 15 C 0.067 3.933 16 C -0.495 4.495 17 H 0.045 0.955 18 C 0.045 3.955 19 N -0.856 5.856 20 Si 0.969 3.031 21 H -0.240 1.240 22 H -0.276 1.276 23 H -0.256 1.256 24 C -0.168 4.168 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.183 0.817 42 H 0.149 0.851 43 H 0.111 0.889 44 H 0.294 0.706 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.314 -7.448 -20.000 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C -0.057 4.057 4 N -0.328 5.328 5 C -0.005 4.005 6 C -0.125 4.125 7 C -0.194 4.194 8 C -0.195 4.195 9 C 0.348 3.652 10 O -0.459 6.459 11 C -0.117 4.117 12 C -0.233 4.233 13 C -0.102 4.102 14 C -0.244 4.244 15 C 0.065 3.935 16 C -0.525 4.525 17 H 0.064 0.936 18 C -0.169 4.169 19 N -0.482 5.482 20 Si 0.791 3.209 21 H -0.165 1.165 22 H -0.202 1.202 23 H -0.180 1.180 24 C -0.189 4.189 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.200 0.800 42 H 0.166 0.834 43 H 0.128 0.872 44 H 0.105 0.895 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.636 -7.291 -19.775 23.175 hybrid contribution 0.557 0.683 0.862 1.233 sum -9.079 -6.608 -18.913 21.995 Atomic orbital electron populations 1.21732 0.93245 1.02881 1.02903 1.21977 0.97733 0.95665 1.02808 1.22859 0.77931 0.98911 1.05983 1.47829 1.07781 1.68866 1.08330 1.21711 0.97265 0.97237 0.84244 1.21486 0.99345 0.95871 0.95807 1.21763 0.99372 0.99514 0.98734 1.21723 1.00741 1.02254 0.94753 1.18655 0.86600 0.75631 0.84338 1.90684 1.15368 1.53266 1.86559 1.19771 0.96299 1.01845 0.93816 1.22340 0.93657 1.06899 1.00410 1.21136 1.00121 0.96637 0.92335 1.21576 0.97270 1.04871 1.00732 1.17759 0.92803 0.91805 0.91122 1.19419 0.95626 1.25758 1.11653 0.93639 1.26892 1.04167 0.93373 0.92430 1.69721 1.41022 1.28368 1.09116 0.85500 0.77021 0.78105 0.80319 1.16478 1.20235 1.17999 1.21198 0.99754 1.04462 0.93461 0.91167 0.91454 0.92292 0.90129 0.92282 0.87228 0.88707 0.87203 0.92071 0.90330 0.95877 0.94085 0.92474 0.90512 0.91927 0.93025 0.80012 0.83365 0.87179 0.89527 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.83 71.98 0.71 -1.15 16 2 C -0.14 -2.36 5.19 30.60 0.16 -2.20 16 3 C 0.06 1.35 4.86 86.38 0.42 1.77 16 4 N -0.60 -16.75 2.39 -825.19 -1.97 -18.72 16 5 C 0.12 2.68 4.95 86.38 0.43 3.11 16 6 C -0.11 -2.26 3.13 -10.80 -0.03 -2.29 16 7 C -0.14 -3.99 7.91 71.98 0.57 -3.42 16 8 C -0.14 -2.14 9.19 71.98 0.66 -1.48 16 9 C 0.56 21.88 6.17 86.80 0.54 22.42 16 10 O -0.58 -26.62 14.20 -3.87 -0.06 -26.68 16 11 C -0.11 -4.87 5.60 -20.13 -0.11 -4.99 16 12 C -0.22 -7.50 7.50 22.70 0.17 -7.33 16 13 C -0.08 -3.06 10.01 22.18 0.22 -2.84 16 14 C -0.23 -10.18 7.29 22.77 0.17 -10.01 16 15 C 0.07 3.56 5.03 -21.32 -0.11 3.45 16 16 C -0.49 -29.14 9.56 23.47 0.22 -28.91 16 17 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 18 C 0.04 2.45 5.41 85.25 0.46 2.91 16 19 N -0.86 -48.17 13.93 21.83 0.30 -47.87 16 20 Si 0.97 42.00 24.71 68.60 1.70 43.69 16 21 H -0.24 -9.37 6.35 99.48 0.63 -8.74 16 22 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 C -0.17 -8.63 9.33 23.01 0.21 -8.42 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.78 7.88 -2.39 -0.02 0.76 16 28 H 0.08 1.10 7.54 -2.38 -0.02 1.09 16 29 H 0.06 1.20 7.00 -2.38 -0.02 1.18 16 30 H 0.11 2.74 4.06 -2.82 -0.01 2.73 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 1.69 7.44 -2.39 -0.02 1.67 16 33 H 0.06 1.68 7.45 -2.39 -0.02 1.66 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.02 0.82 6.02 -2.39 -0.01 0.80 16 36 H 0.04 1.31 7.96 -2.39 -0.02 1.29 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.18 4.80 1.89 -2.91 -0.01 4.79 16 42 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.11 4.88 4.78 -2.91 -0.01 4.87 16 44 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 45 H 0.08 4.60 7.82 -2.91 -0.02 4.57 16 Total: -1.00 -69.55 346.17 5.56 -63.99 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.90 Total: 24.95 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 4.69 Total: -39.36 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -1.67 Total: -66.59 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.68 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.70 Total: 43.69 kcal Total: -69.55 5.56 -63.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298595951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.839 kcal (2) G-P(sol) polarization free energy of solvation -69.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds