Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46688 * 2 1 4 4 H 1.09010 * 109.47305 * 300.20760 * 3 2 1 5 5 N 1.46899 * 109.46918 * 180.21366 * 3 2 1 6 6 C 1.46899 * 111.00337 * 85.49362 * 5 3 2 7 7 C 1.50709 * 109.47222 * 175.77281 * 6 5 3 8 8 C 1.38634 * 119.75092 * 89.99751 * 7 6 5 9 9 C 1.37617 * 120.24786 * 180.02562 * 8 7 6 10 10 C 1.40721 * 119.74436 * 359.97438 * 9 8 7 11 11 C 1.41394 * 120.24340 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99599 * 336.54589 * 11 10 9 13 13 C 1.39939 * 119.99956 * 156.54334 * 11 10 9 14 14 N 1.30826 * 120.00111 * 333.57421 * 13 11 10 15 15 Si 1.86805 * 120.00051 * 153.56911 * 13 11 10 16 16 H 1.48501 * 109.46618 * 84.99487 * 15 13 11 17 17 H 1.48499 * 109.47065 * 324.99401 * 15 13 11 18 18 H 1.48500 * 109.47157 * 204.99357 * 15 13 11 19 19 C 1.40712 * 119.51151 * 0.27938 * 10 9 8 20 20 C 1.37625 * 119.74481 * 359.42147 * 19 10 9 21 21 C 1.52997 * 109.47224 * 60.21133 * 3 2 1 22 22 H 1.08993 * 109.82419 * 300.55946 * 21 3 2 23 23 C 1.54382 * 109.82819 * 179.58699 * 21 3 2 24 24 C 1.55303 * 102.25202 * 219.12870 * 23 21 3 25 25 C 1.54952 * 100.94269 * 34.13196 * 24 23 21 26 26 O 1.43240 * 109.83002 * 61.45438 * 21 3 2 27 27 H 1.08998 * 109.47001 * 292.97969 * 1 2 3 28 28 H 1.08997 * 109.47444 * 52.98596 * 1 2 3 29 29 H 1.09004 * 109.47026 * 172.98464 * 1 2 3 30 30 H 1.08999 * 109.46960 * 240.00395 * 2 1 3 31 31 H 1.08995 * 109.47482 * 120.00156 * 2 1 3 32 32 H 1.00904 * 111.00213 * 321.53609 * 5 3 2 33 33 H 1.08994 * 109.47403 * 55.77161 * 6 5 3 34 34 H 1.09004 * 109.46965 * 295.76651 * 6 5 3 35 35 H 1.08003 * 119.87538 * 0.02562 * 8 7 6 36 36 H 1.07998 * 120.12719 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00306 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.12603 * 179.70148 * 19 10 9 39 39 H 1.07996 * 119.87782 * 180.27413 * 20 19 10 40 40 H 1.09005 * 110.85045 * 337.31581 * 23 21 3 41 41 H 1.08997 * 110.85193 * 100.93826 * 23 21 3 42 42 H 1.08998 * 111.12757 * 276.21721 * 24 23 21 43 43 H 1.09005 * 111.16535 * 152.06330 * 24 23 21 44 44 H 1.08994 * 110.30952 * 204.63954 * 25 24 23 45 45 H 1.09005 * 110.38993 * 82.51374 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6735 1.9575 -0.8882 5 7 3.5089 1.4426 -0.0052 6 6 4.0306 1.3365 -1.3743 7 6 5.5336 1.4440 -1.3489 8 6 6.3031 0.2988 -1.2130 9 6 7.6763 0.3852 -1.1881 10 6 8.2990 1.6420 -1.3017 11 6 9.7091 1.7429 -1.2779 12 1 10.2981 0.9679 -0.8099 13 6 10.3415 2.8469 -1.8607 14 7 9.7585 3.4952 -2.8361 15 14 12.0182 3.3950 -1.2458 16 1 13.0769 2.6080 -1.9278 17 1 12.1041 3.1744 0.2202 18 1 12.2063 4.8381 -1.5412 19 6 7.5078 2.7981 -1.4338 20 6 6.1363 2.6874 -1.4625 21 6 1.5342 2.1622 1.2519 22 1 0.4444 2.1568 1.2665 23 6 2.0528 3.6163 1.2654 24 6 2.3877 3.8328 2.7664 25 6 2.8713 2.4163 3.1671 26 8 2.0393 1.5116 2.4238 27 1 -0.3633 0.4012 0.9461 28 1 -0.3634 0.6186 -0.8205 29 1 -0.3633 -1.0200 -0.1255 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8726 0.7043 0.5786 33 1 3.6191 2.1413 -1.9833 34 1 3.7423 0.3752 -1.7995 35 1 5.8229 -0.6647 -1.1264 36 1 8.2738 -0.5082 -1.0826 37 1 10.1970 4.2601 -3.2403 38 1 7.9752 3.7682 -1.5168 39 1 5.5272 3.5728 -1.5682 40 1 2.9473 3.7149 0.6503 41 1 1.2769 4.3079 0.9374 42 1 1.4995 4.1186 3.3298 43 1 3.1822 4.5687 2.8902 44 1 2.7382 2.2599 4.2376 45 1 3.9175 2.2804 2.8927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348380556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = -46.721527 kcal Electronic energy + Delta-G solvation = -23098.399464 eV Core-core repulsion = 19886.362079 eV Total energy + Delta-G solvation = -3212.037385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.67541 -37.71851 -36.23258 -33.94181 -32.49874 -31.92636 -30.06446 -29.28514 -28.96133 -26.49318 -24.52942 -22.81004 -22.64989 -21.42293 -20.95036 -20.05236 -19.66840 -17.27447 -16.74847 -16.21409 -15.28743 -15.11447 -14.75159 -14.47672 -14.16231 -13.98284 -13.69987 -13.44168 -13.11274 -12.96904 -12.49197 -12.35231 -12.05127 -11.92147 -11.69963 -11.62378 -11.52735 -11.42613 -11.15013 -11.05385 -10.93237 -10.81080 -10.64152 -10.54043 -10.41099 -10.37495 -9.63484 -9.36849 -9.23959 -9.02841 -7.90662 -7.41162 -7.31635 -6.82794 -4.30397 2.77352 3.06923 3.09476 3.10591 3.22304 3.93203 3.97797 4.42737 4.64239 4.78844 4.87691 4.97617 5.06572 5.12607 5.33120 5.37792 5.45818 5.52091 5.70371 5.75454 5.81603 5.83863 5.88528 5.88813 5.97017 5.98876 6.03722 6.07619 6.21364 6.30401 6.34112 6.39679 6.45530 6.48878 6.97759 7.07937 7.18553 7.28600 7.37830 7.49962 7.63678 7.80808 7.93701 8.06865 8.18007 8.32141 8.65167 8.90528 9.00686 10.13860 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.003554 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.603285 B = 7877.198114 C = 8498.987232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.075 3.925 4 H 0.079 0.921 5 N -0.672 5.672 6 C 0.125 3.875 7 C -0.214 4.214 8 C -0.081 4.081 9 C -0.230 4.230 10 C 0.117 3.883 11 C -0.470 4.470 12 H 0.078 0.922 13 C 0.084 3.916 14 N -0.782 5.782 15 Si 0.899 3.101 16 H -0.269 1.269 17 H -0.260 1.260 18 H -0.276 1.276 19 C -0.175 4.175 20 C -0.075 4.075 21 C 0.094 3.906 22 H 0.074 0.926 23 C -0.146 4.146 24 C -0.154 4.154 25 C 0.056 3.944 26 O -0.377 6.377 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.343 0.657 33 H 0.059 0.941 34 H 0.017 0.983 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.281 0.719 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.254 0.208 6.368 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C -0.036 4.036 4 H 0.097 0.903 5 N -0.302 5.302 6 C -0.003 4.003 7 C -0.215 4.215 8 C -0.100 4.100 9 C -0.250 4.250 10 C 0.114 3.886 11 C -0.499 4.499 12 H 0.096 0.904 13 C -0.135 4.135 14 N -0.406 5.406 15 Si 0.723 3.277 16 H -0.194 1.194 17 H -0.184 1.184 18 H -0.201 1.201 19 C -0.194 4.194 20 C -0.094 4.094 21 C 0.036 3.964 22 H 0.091 0.909 23 C -0.184 4.184 24 C -0.191 4.191 25 C -0.020 4.020 26 O -0.296 6.296 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.213 0.883 6.249 15.551 hybrid contribution 0.685 -0.415 -0.146 0.814 sum -13.529 0.468 6.103 14.849 Atomic orbital electron populations 1.21748 0.95984 1.01246 1.01575 1.22164 0.96258 0.98316 1.02136 1.21995 0.89765 0.94629 0.97238 0.90314 1.60652 1.04374 1.53309 1.11911 1.20577 0.93243 0.98095 0.88375 1.18851 0.92165 0.93697 1.16814 1.20357 0.93976 0.95530 1.00137 1.20896 0.93442 0.96518 1.14123 1.17563 0.93168 0.90637 0.87206 1.19535 0.91958 1.05415 1.32987 0.90406 1.25890 0.99745 0.95317 0.92598 1.69883 1.39025 1.16272 1.15401 0.86487 0.82001 0.78310 0.80921 1.19405 1.18365 1.20115 1.21104 0.92120 0.98326 1.07866 1.20424 0.94537 0.94959 0.99448 1.22765 0.96672 0.91563 0.85445 0.90859 1.23113 1.02929 0.95404 0.96930 1.23187 1.01410 0.98116 0.96437 1.23292 0.95435 0.87819 0.95478 1.88344 1.66481 1.38419 1.36365 0.92463 0.93063 0.93186 0.92415 0.91166 0.83785 0.92255 0.96464 0.90007 0.89260 0.90790 0.87586 0.89680 0.88260 0.91396 0.91423 0.90236 0.90821 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.36 37.16 0.35 -1.13 16 2 C -0.15 -1.79 5.30 -26.73 -0.14 -1.93 16 3 C 0.07 0.95 1.93 -67.72 -0.13 0.82 16 4 H 0.08 0.98 7.73 -51.92 -0.40 0.58 16 5 N -0.67 -10.30 5.12 -107.99 -0.55 -10.85 16 6 C 0.12 2.15 5.62 -4.97 -0.03 2.12 16 7 C -0.21 -4.57 5.45 -104.32 -0.57 -5.14 16 8 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 9 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 10 C 0.12 3.13 5.56 -106.82 -0.59 2.53 16 11 C -0.47 -12.57 9.00 -37.74 -0.34 -12.91 16 12 H 0.08 2.01 7.97 -52.48 -0.42 1.59 16 13 C 0.08 2.12 4.93 -17.34 -0.09 2.03 16 14 N -0.78 -20.24 11.47 55.55 0.64 -19.60 16 15 Si 0.90 18.58 29.63 -169.99 -5.04 13.54 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 19 C -0.17 -4.54 8.74 -38.87 -0.34 -4.88 16 20 C -0.07 -1.73 9.67 -39.66 -0.38 -2.12 16 21 C 0.09 1.13 2.99 -26.01 -0.08 1.05 16 22 H 0.07 0.80 6.59 -51.93 -0.34 0.46 16 23 C -0.15 -1.70 6.43 -24.79 -0.16 -1.86 16 24 C -0.15 -1.65 7.16 -24.48 -0.18 -1.83 16 25 C 0.06 0.68 7.78 38.19 0.30 0.98 16 26 O -0.38 -5.10 10.27 -35.23 -0.36 -5.46 16 27 H 0.06 0.57 6.82 -51.93 -0.35 0.21 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.72 7.56 -51.93 -0.39 0.33 16 31 H 0.07 0.92 7.72 -51.93 -0.40 0.52 16 32 H 0.34 5.60 8.50 -39.29 -0.33 5.27 16 33 H 0.06 1.00 7.89 -51.93 -0.41 0.59 16 34 H 0.02 0.29 7.51 -51.93 -0.39 -0.10 16 35 H 0.08 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 37 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 38 H 0.11 2.84 6.44 -52.49 -0.34 2.50 16 39 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.10 1.38 7.16 -51.93 -0.37 1.01 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -26.80 358.54 -10.57 -37.37 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.51 Total: 10.13 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -3.14 Total: -30.53 kcal Atomic # 7 Polarization: -30.53 SS G_CDS: 0.08 Total: -30.45 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.36 Total: -5.46 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.04 Total: 13.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.80 -10.57 -37.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348380556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.353 kcal (2) G-P(sol) polarization free energy of solvation -26.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds