Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46688 * 2 1 4 4 H 1.09010 * 109.47305 * 300.20760 * 3 2 1 5 5 N 1.46899 * 109.46918 * 180.21366 * 3 2 1 6 6 C 1.46899 * 111.00337 * 85.49362 * 5 3 2 7 7 C 1.50709 * 109.47222 * 175.77281 * 6 5 3 8 8 C 1.38634 * 119.75092 * 89.99751 * 7 6 5 9 9 C 1.37617 * 120.24786 * 180.02562 * 8 7 6 10 10 C 1.40721 * 119.74436 * 359.97438 * 9 8 7 11 11 C 1.41394 * 120.24340 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99599 * 336.54589 * 11 10 9 13 13 C 1.39939 * 119.99956 * 156.54334 * 11 10 9 14 14 N 1.30826 * 120.00111 * 333.57421 * 13 11 10 15 15 Si 1.86805 * 120.00051 * 153.56911 * 13 11 10 16 16 H 1.48501 * 109.46618 * 84.99487 * 15 13 11 17 17 H 1.48499 * 109.47065 * 324.99401 * 15 13 11 18 18 H 1.48500 * 109.47157 * 204.99357 * 15 13 11 19 19 C 1.40712 * 119.51151 * 0.27938 * 10 9 8 20 20 C 1.37625 * 119.74481 * 359.42147 * 19 10 9 21 21 C 1.52997 * 109.47224 * 60.21133 * 3 2 1 22 22 H 1.08993 * 109.82419 * 300.55946 * 21 3 2 23 23 C 1.54382 * 109.82819 * 179.58699 * 21 3 2 24 24 C 1.55303 * 102.25202 * 219.12870 * 23 21 3 25 25 C 1.54952 * 100.94269 * 34.13196 * 24 23 21 26 26 O 1.43240 * 109.83002 * 61.45438 * 21 3 2 27 27 H 1.08998 * 109.47001 * 292.97969 * 1 2 3 28 28 H 1.08997 * 109.47444 * 52.98596 * 1 2 3 29 29 H 1.09004 * 109.47026 * 172.98464 * 1 2 3 30 30 H 1.08999 * 109.46960 * 240.00395 * 2 1 3 31 31 H 1.08995 * 109.47482 * 120.00156 * 2 1 3 32 32 H 1.00904 * 111.00213 * 321.53609 * 5 3 2 33 33 H 1.08994 * 109.47403 * 55.77161 * 6 5 3 34 34 H 1.09004 * 109.46965 * 295.76651 * 6 5 3 35 35 H 1.08003 * 119.87538 * 0.02562 * 8 7 6 36 36 H 1.07998 * 120.12719 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00306 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.12603 * 179.70148 * 19 10 9 39 39 H 1.07996 * 119.87782 * 180.27413 * 20 19 10 40 40 H 1.09005 * 110.85045 * 337.31581 * 23 21 3 41 41 H 1.08997 * 110.85193 * 100.93826 * 23 21 3 42 42 H 1.08998 * 111.12757 * 276.21721 * 24 23 21 43 43 H 1.09005 * 111.16535 * 152.06330 * 24 23 21 44 44 H 1.08994 * 110.30952 * 204.63954 * 25 24 23 45 45 H 1.09005 * 110.38993 * 82.51374 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6735 1.9575 -0.8882 5 7 3.5089 1.4426 -0.0052 6 6 4.0306 1.3365 -1.3743 7 6 5.5336 1.4440 -1.3489 8 6 6.3031 0.2988 -1.2130 9 6 7.6763 0.3852 -1.1881 10 6 8.2990 1.6420 -1.3017 11 6 9.7091 1.7429 -1.2779 12 1 10.2981 0.9679 -0.8099 13 6 10.3415 2.8469 -1.8607 14 7 9.7585 3.4952 -2.8361 15 14 12.0182 3.3950 -1.2458 16 1 13.0769 2.6080 -1.9278 17 1 12.1041 3.1744 0.2202 18 1 12.2063 4.8381 -1.5412 19 6 7.5078 2.7981 -1.4338 20 6 6.1363 2.6874 -1.4625 21 6 1.5342 2.1622 1.2519 22 1 0.4444 2.1568 1.2665 23 6 2.0528 3.6163 1.2654 24 6 2.3877 3.8328 2.7664 25 6 2.8713 2.4163 3.1671 26 8 2.0393 1.5116 2.4238 27 1 -0.3633 0.4012 0.9461 28 1 -0.3634 0.6186 -0.8205 29 1 -0.3633 -1.0200 -0.1255 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8726 0.7043 0.5786 33 1 3.6191 2.1413 -1.9833 34 1 3.7423 0.3752 -1.7995 35 1 5.8229 -0.6647 -1.1264 36 1 8.2738 -0.5082 -1.0826 37 1 10.1970 4.2601 -3.2403 38 1 7.9752 3.7682 -1.5168 39 1 5.5272 3.5728 -1.5682 40 1 2.9473 3.7149 0.6503 41 1 1.2769 4.3079 0.9374 42 1 1.4995 4.1186 3.3298 43 1 3.1822 4.5687 2.8902 44 1 2.7382 2.2599 4.2376 45 1 3.9175 2.2804 2.8927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348380556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = -60.244234 kcal Electronic energy + Delta-G solvation = -23098.985853 eV Core-core repulsion = 19886.362079 eV Total energy + Delta-G solvation = -3212.623774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.67554 -39.48055 -37.45579 -35.68316 -33.83950 -32.88116 -31.60503 -31.11778 -30.11877 -28.06170 -25.83471 -24.27906 -23.58335 -22.83770 -22.33088 -21.67659 -20.83589 -19.20687 -17.73139 -17.30771 -17.08403 -16.38147 -15.87848 -15.77787 -15.68518 -15.25662 -15.15769 -14.81163 -14.38700 -14.10036 -13.90157 -13.79430 -13.55199 -13.32449 -13.09261 -13.02586 -12.71490 -12.53957 -12.50943 -12.41411 -12.22832 -12.09202 -12.00664 -11.74035 -11.60714 -11.45753 -11.32689 -11.22215 -10.92081 -10.28679 -9.32502 -9.30231 -9.03378 -8.70529 -6.29088 0.98171 1.16703 1.36934 1.46765 1.55391 2.20146 2.66525 3.05010 3.39961 3.76186 3.82626 3.93578 4.07350 4.15406 4.20213 4.31817 4.38814 4.42633 4.49038 4.57820 4.59222 4.62218 4.74183 4.81179 4.88564 4.93281 4.98453 5.03925 5.07221 5.10409 5.12676 5.17192 5.19200 5.29769 5.36460 5.43525 5.48515 5.51866 5.72754 5.97518 6.10308 6.19123 6.27445 6.35556 6.41329 6.57583 6.71599 6.94897 7.06539 8.28914 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.003554 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.603285 B = 7877.198114 C = 8498.987232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 C 0.076 3.924 4 H 0.087 0.913 5 N -0.675 5.675 6 C 0.134 3.866 7 C -0.199 4.199 8 C -0.083 4.083 9 C -0.249 4.249 10 C 0.085 3.915 11 C -0.512 4.512 12 H 0.073 0.927 13 C 0.045 3.955 14 N -0.815 5.815 15 Si 0.974 3.026 16 H -0.260 1.260 17 H -0.261 1.261 18 H -0.264 1.264 19 C -0.197 4.197 20 C -0.079 4.079 21 C 0.093 3.907 22 H 0.092 0.908 23 C -0.146 4.146 24 C -0.148 4.148 25 C 0.052 3.948 26 O -0.392 6.392 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.337 0.663 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.290 0.710 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.101 0.506 6.859 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.184 4.184 3 C -0.034 4.034 4 H 0.105 0.895 5 N -0.305 5.305 6 C 0.006 3.994 7 C -0.201 4.201 8 C -0.101 4.101 9 C -0.268 4.268 10 C 0.083 3.917 11 C -0.541 4.541 12 H 0.091 0.909 13 C -0.172 4.172 14 N -0.440 5.440 15 Si 0.794 3.206 16 H -0.184 1.184 17 H -0.185 1.185 18 H -0.189 1.189 19 C -0.217 4.217 20 C -0.098 4.098 21 C 0.035 3.965 22 H 0.110 0.890 23 C -0.183 4.183 24 C -0.186 4.186 25 C -0.024 4.024 26 O -0.312 6.312 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.080 1.175 6.736 17.473 hybrid contribution 1.092 -0.567 -0.297 1.266 sum -14.988 0.608 6.438 16.324 Atomic orbital electron populations 1.21710 0.94233 1.02008 1.02141 1.22084 0.97755 0.97355 1.01180 1.22071 0.87774 0.95447 0.98121 0.89534 1.60549 1.06354 1.53132 1.10439 1.20453 0.90173 0.99056 0.89739 1.19298 0.94694 0.92563 1.13507 1.20669 0.93170 0.97222 0.99066 1.21102 0.94826 0.96055 1.14843 1.17893 0.93820 0.91651 0.88381 1.19768 0.92449 1.06979 1.34886 0.90904 1.26707 1.03711 0.94703 0.92068 1.69911 1.40994 1.16891 1.16225 0.85360 0.76953 0.78311 0.79972 1.18424 1.18475 1.18864 1.21073 0.93376 0.97450 1.09785 1.20665 0.93715 0.96557 0.98863 1.22864 0.97550 0.91453 0.84622 0.89023 1.23081 1.02445 0.95719 0.97096 1.23178 1.02171 0.97164 0.96053 1.23337 0.94171 0.88670 0.96250 1.88333 1.66599 1.39309 1.36910 0.92213 0.92009 0.92532 0.92934 0.92537 0.84475 0.91371 0.95371 0.87221 0.89053 0.89971 0.89373 0.87972 0.90734 0.89413 0.89541 0.90159 0.89283 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.36 71.98 0.67 -1.78 16 2 C -0.14 -3.14 5.30 30.59 0.16 -2.98 16 3 C 0.08 1.76 1.93 44.91 0.09 1.85 16 4 H 0.09 1.90 7.73 -2.38 -0.02 1.88 16 5 N -0.67 -19.65 5.12 -495.57 -2.54 -22.19 16 6 C 0.13 4.35 5.62 85.56 0.48 4.83 16 7 C -0.20 -8.35 5.45 -19.67 -0.11 -8.46 16 8 C -0.08 -3.65 9.67 22.22 0.21 -3.43 16 9 C -0.25 -12.61 9.80 22.73 0.22 -12.39 16 10 C 0.08 4.72 5.56 -21.29 -0.12 4.60 16 11 C -0.51 -28.53 9.00 23.46 0.21 -28.32 16 12 H 0.07 3.95 7.97 -2.91 -0.02 3.92 16 13 C 0.04 2.32 4.93 85.25 0.42 2.74 16 14 N -0.82 -43.42 11.47 21.82 0.25 -43.17 16 15 Si 0.97 38.77 29.63 68.60 2.03 40.80 16 16 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 C -0.20 -10.60 8.74 22.73 0.20 -10.40 16 20 C -0.08 -3.69 9.67 22.22 0.21 -3.48 16 21 C 0.09 2.02 2.99 31.06 0.09 2.11 16 22 H 0.09 1.69 6.59 -2.39 -0.02 1.68 16 23 C -0.15 -3.08 6.43 31.85 0.20 -2.87 16 24 C -0.15 -2.89 7.16 32.05 0.23 -2.66 16 25 C 0.05 1.20 7.78 72.65 0.57 1.77 16 26 O -0.39 -9.94 10.27 -148.98 -1.53 -11.47 16 27 H 0.06 1.00 6.82 -2.39 -0.02 0.98 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.19 7.56 -2.39 -0.02 1.17 16 31 H 0.06 1.39 7.72 -2.39 -0.02 1.37 16 32 H 0.34 10.64 8.50 -89.69 -0.76 9.88 16 33 H 0.07 2.12 7.89 -2.39 -0.02 2.10 16 34 H 0.03 0.87 7.51 -2.39 -0.02 0.85 16 35 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 36 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 38 H 0.09 4.95 6.44 -2.91 -0.02 4.93 16 39 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.07 1.97 7.16 -2.38 -0.02 1.95 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -59.30 358.54 2.17 -57.14 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.20 Total: 37.76 kcal Atomic # 6 Polarization: -62.61 SS G_CDS: 3.75 Total: -58.86 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -2.29 Total: -65.36 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -1.53 Total: -11.47 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -59.30 2.17 -57.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348380556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.109 kcal (2) G-P(sol) polarization free energy of solvation -59.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds