Wall clock time and date at job start Tue Mar 31 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 H 1.09002 * 109.47400 * 301.37749 * 3 2 1 5 5 N 1.46906 * 109.47399 * 61.38176 * 3 2 1 6 6 C 1.46897 * 110.99813 * 55.87835 * 5 3 2 7 7 C 1.50703 * 109.46621 * 185.04488 * 6 5 3 8 8 C 1.38637 * 119.74854 * 90.00216 * 7 6 5 9 9 C 1.37614 * 120.24957 * 179.97438 * 8 7 6 10 10 C 1.40716 * 119.74438 * 0.02562 * 9 8 7 11 11 C 1.41394 * 120.24631 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99771 * 333.15811 * 11 10 9 13 13 C 1.39949 * 120.00076 * 153.16408 * 11 10 9 14 14 N 1.30815 * 119.99975 * 339.36654 * 13 11 10 15 15 Si 1.86801 * 119.99884 * 159.37055 * 13 11 10 16 16 H 1.48507 * 109.47157 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47013 * 240.00277 * 15 13 11 18 18 H 1.48494 * 109.47268 * 119.99667 * 15 13 11 19 19 C 1.40716 * 119.51216 * 0.27395 * 10 9 8 20 20 C 1.37625 * 119.74120 * 359.46560 * 19 10 9 21 21 C 1.53002 * 109.47022 * 181.37930 * 3 2 1 22 22 H 1.08997 * 110.27776 * 68.50914 * 21 3 2 23 23 C 1.54949 * 110.31078 * 190.70502 * 21 3 2 24 24 C 1.55300 * 100.94305 * 155.35788 * 23 21 3 25 25 C 1.54383 * 102.25547 * 325.87208 * 24 23 21 26 26 O 1.43237 * 107.58667 * 21.34898 * 25 24 23 27 27 H 1.08998 * 109.47429 * 183.03742 * 1 2 3 28 28 H 1.09002 * 109.46644 * 303.04061 * 1 2 3 29 29 H 1.09002 * 109.47202 * 63.03622 * 1 2 3 30 30 H 1.08994 * 109.47154 * 240.00136 * 2 1 3 31 31 H 1.08997 * 109.47086 * 119.99811 * 2 1 3 32 32 H 1.00899 * 110.99237 * 291.92465 * 5 3 2 33 33 H 1.08995 * 109.47488 * 65.04575 * 6 5 3 34 34 H 1.08997 * 109.46931 * 305.04086 * 6 5 3 35 35 H 1.08002 * 119.87973 * 359.97367 * 8 7 6 36 36 H 1.08007 * 120.12964 * 179.97438 * 9 8 7 37 37 H 0.96994 * 120.00286 * 358.80079 * 14 13 11 38 38 H 1.07997 * 120.13181 * 179.70803 * 19 10 9 39 39 H 1.07999 * 119.87383 * 180.22992 * 20 19 10 40 40 H 1.09000 * 111.12639 * 273.27718 * 23 21 3 41 41 H 1.09003 * 111.12496 * 37.44243 * 23 21 3 42 42 H 1.09004 * 110.85400 * 207.67580 * 24 23 21 43 43 H 1.09006 * 110.84668 * 84.05707 * 24 23 21 44 44 H 1.09011 * 109.82600 * 261.84308 * 25 24 23 45 45 H 1.08998 * 109.90901 * 140.91085 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6566 1.9634 -0.8774 5 7 1.5778 2.1253 1.2158 6 6 1.9942 1.3950 2.4204 7 6 1.3995 2.0541 3.6381 8 6 0.1573 1.6494 4.1018 9 6 -0.3953 2.2439 5.2132 10 6 0.3055 3.2666 5.8790 11 6 -0.2520 3.8843 7.0222 12 1 -1.3241 3.9188 7.1486 13 6 0.5853 4.4512 7.9897 14 7 1.8373 4.0805 8.0694 15 14 -0.0850 5.7370 9.1674 16 1 -1.5198 5.9797 8.8710 17 1 0.6748 7.0023 9.0033 18 1 0.0573 5.2515 10.5635 19 6 1.5628 3.6736 5.3956 20 6 2.0984 3.0612 4.2856 21 6 3.5696 1.4426 -0.0347 22 1 3.9256 1.0757 -0.9974 23 6 4.1136 2.8683 0.2344 24 6 5.5285 2.5447 0.7865 25 6 5.2874 1.2269 1.5538 26 8 4.0926 0.6343 1.0313 27 1 -0.3634 -1.0262 0.0545 28 1 -0.3633 0.5603 0.8615 29 1 -0.3634 0.4660 -0.9160 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5773 2.2551 1.1993 33 1 3.0815 1.4073 2.4951 34 1 1.6459 0.3640 2.3587 35 1 -0.3790 0.8646 3.5890 36 1 -1.3634 1.9274 5.5725 37 1 2.1809 3.4003 7.4694 38 1 2.1071 4.4607 5.8961 39 1 3.0648 3.3693 3.9150 40 1 4.1744 3.4461 -0.6879 41 1 3.5096 3.3849 0.9803 42 1 5.8707 3.3294 1.4613 43 1 6.2378 2.3952 -0.0277 44 1 5.1626 1.4353 2.6165 45 1 6.1302 0.5517 1.4059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348380557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:50 Heat of formation + Delta-G solvation = -40.920002 kcal Electronic energy + Delta-G solvation = -23668.116544 eV Core-core repulsion = 20456.330732 eV Total energy + Delta-G solvation = -3211.785812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97553 -37.86081 -36.52680 -34.04565 -32.06622 -31.77226 -30.19128 -29.48285 -28.80623 -26.23555 -25.02722 -23.31124 -22.21013 -21.27349 -21.03481 -20.15291 -19.43148 -17.87509 -17.12547 -15.86580 -15.51260 -15.14294 -14.53561 -14.45527 -14.16301 -14.08321 -13.73286 -13.56401 -13.19807 -12.95362 -12.52061 -12.34802 -12.17471 -11.97426 -11.83385 -11.67968 -11.57903 -11.35197 -11.12697 -11.01726 -10.78857 -10.63197 -10.52489 -10.44120 -10.38670 -10.25762 -9.56555 -9.43732 -9.13886 -8.95588 -7.95008 -7.63585 -7.37597 -7.08259 -4.39083 2.77853 2.92256 3.18075 3.29428 3.36806 3.87099 4.05632 4.50222 4.53784 4.74300 4.87443 4.94037 5.08507 5.13003 5.19822 5.32173 5.39941 5.56640 5.62738 5.67279 5.74565 5.80250 5.81033 5.89402 5.97647 5.98578 6.01818 6.05084 6.20802 6.28322 6.31083 6.46517 6.50821 6.66081 6.84469 7.07683 7.11831 7.20683 7.45056 7.48694 7.70320 7.82620 7.86350 7.91101 8.07093 8.26425 8.38262 8.81945 8.96949 10.15725 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.004013 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.719097 B = 6975.323680 C = 7854.580050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C 0.086 3.914 4 H 0.084 0.916 5 N -0.673 5.673 6 C 0.113 3.887 7 C -0.219 4.219 8 C -0.078 4.078 9 C -0.227 4.227 10 C 0.098 3.902 11 C -0.524 4.524 12 H 0.073 0.927 13 C 0.035 3.965 14 N -0.810 5.810 15 Si 1.074 2.926 16 H -0.278 1.278 17 H -0.276 1.276 18 H -0.279 1.279 19 C -0.222 4.222 20 C -0.061 4.061 21 C 0.090 3.910 22 H 0.064 0.936 23 C -0.146 4.146 24 C -0.157 4.157 25 C 0.050 3.950 26 O -0.372 6.372 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.337 0.663 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.301 0.699 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 -3.701 -14.378 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C -0.024 4.024 4 H 0.102 0.898 5 N -0.304 5.304 6 C -0.014 4.014 7 C -0.220 4.220 8 C -0.097 4.097 9 C -0.246 4.246 10 C 0.095 3.905 11 C -0.553 4.553 12 H 0.091 0.909 13 C -0.186 4.186 14 N -0.435 5.435 15 Si 0.898 3.102 16 H -0.203 1.203 17 H -0.201 1.201 18 H -0.204 1.204 19 C -0.242 4.242 20 C -0.080 4.080 21 C 0.032 3.968 22 H 0.082 0.918 23 C -0.183 4.183 24 C -0.194 4.194 25 C -0.026 4.026 26 O -0.292 6.292 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.111 -2.486 -13.006 14.193 hybrid contribution -0.899 -1.681 -1.424 2.379 sum 4.212 -4.166 -14.430 15.598 Atomic orbital electron populations 1.21792 0.96043 1.01615 1.01680 1.22144 0.95792 0.98797 1.02842 1.21713 0.93228 0.92885 0.94619 0.89816 1.60888 1.18796 1.49746 1.00939 1.20941 1.00813 0.93251 0.86419 1.19088 0.97494 1.04782 1.00663 1.20442 0.94795 0.98198 0.96236 1.20926 1.01567 1.01308 1.00841 1.17691 0.91483 0.89267 0.92060 1.20607 0.96315 1.33416 1.04922 0.90862 1.26971 0.93956 0.98540 0.99084 1.70421 1.15443 1.23814 1.33852 0.83518 0.76007 0.75463 0.75213 1.20281 1.20094 1.20432 1.21182 0.99597 1.03724 0.99683 1.20415 0.97367 0.95307 0.94894 1.22960 0.93412 0.90315 0.90121 0.91834 1.23280 0.95234 0.97132 1.02670 1.23101 0.98141 0.97955 1.00226 1.23042 0.87486 0.93578 0.98526 1.88451 1.40658 1.48859 1.51199 0.92925 0.92447 0.93013 0.92362 0.90398 0.84340 0.89514 0.95818 0.89874 0.89179 0.88459 0.87762 0.89487 0.90985 0.87518 0.90207 0.91348 0.91138 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.69 37.16 0.36 -1.40 16 2 C -0.16 -1.91 4.78 -26.73 -0.13 -2.03 16 3 C 0.09 1.07 2.77 -67.71 -0.19 0.88 16 4 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 5 N -0.67 -10.12 4.92 -107.99 -0.53 -10.65 16 6 C 0.11 1.98 4.61 -4.98 -0.02 1.95 16 7 C -0.22 -4.66 5.36 -104.33 -0.56 -5.22 16 8 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 9 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 10 C 0.10 2.63 5.33 -106.83 -0.57 2.06 16 11 C -0.52 -14.25 9.02 -37.74 -0.34 -14.59 16 12 H 0.07 1.95 7.93 -52.48 -0.42 1.53 16 13 C 0.03 0.91 5.05 -17.34 -0.09 0.82 16 14 N -0.81 -22.07 12.49 55.55 0.69 -21.38 16 15 Si 1.07 22.17 29.98 -169.99 -5.10 17.07 16 16 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 C -0.22 -5.74 7.78 -38.87 -0.30 -6.04 16 20 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 21 C 0.09 1.09 3.22 -25.70 -0.08 1.00 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 C -0.15 -1.70 6.45 -24.48 -0.16 -1.86 16 24 C -0.16 -1.66 7.02 -24.79 -0.17 -1.84 16 25 C 0.05 0.61 7.15 37.88 0.27 0.88 16 26 O -0.37 -5.20 7.53 -35.23 -0.27 -5.46 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.74 6.74 -51.93 -0.35 0.39 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.12 5.64 -51.93 -0.29 0.83 16 32 H 0.34 5.20 7.23 -39.29 -0.28 4.92 16 33 H 0.09 1.55 4.37 -51.93 -0.23 1.32 16 34 H 0.02 0.43 5.86 -51.93 -0.30 0.12 16 35 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 37 H 0.30 8.39 6.05 -40.82 -0.25 8.14 16 38 H 0.10 2.79 6.37 -52.49 -0.33 2.46 16 39 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.11 1.52 6.91 -51.93 -0.36 1.17 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.93 7.62 -51.92 -0.40 0.54 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -27.56 345.75 -10.20 -37.76 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -7.08 Total: 12.75 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: -3.13 Total: -35.30 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.16 Total: -32.03 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.27 Total: -5.46 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.10 Total: 17.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.56 -10.20 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348380557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.162 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds