Wall clock time and date at job start Tue Mar 31 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 H 1.09002 * 109.47400 * 301.37749 * 3 2 1 5 5 N 1.46906 * 109.47399 * 61.38176 * 3 2 1 6 6 C 1.46897 * 110.99813 * 55.87835 * 5 3 2 7 7 C 1.50703 * 109.46621 * 185.04488 * 6 5 3 8 8 C 1.38637 * 119.74854 * 90.00216 * 7 6 5 9 9 C 1.37614 * 120.24957 * 179.97438 * 8 7 6 10 10 C 1.40716 * 119.74438 * 0.02562 * 9 8 7 11 11 C 1.41394 * 120.24631 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99771 * 333.15811 * 11 10 9 13 13 C 1.39949 * 120.00076 * 153.16408 * 11 10 9 14 14 N 1.30815 * 119.99975 * 339.36654 * 13 11 10 15 15 Si 1.86801 * 119.99884 * 159.37055 * 13 11 10 16 16 H 1.48507 * 109.47157 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47013 * 240.00277 * 15 13 11 18 18 H 1.48494 * 109.47268 * 119.99667 * 15 13 11 19 19 C 1.40716 * 119.51216 * 0.27395 * 10 9 8 20 20 C 1.37625 * 119.74120 * 359.46560 * 19 10 9 21 21 C 1.53002 * 109.47022 * 181.37930 * 3 2 1 22 22 H 1.08997 * 110.27776 * 68.50914 * 21 3 2 23 23 C 1.54949 * 110.31078 * 190.70502 * 21 3 2 24 24 C 1.55300 * 100.94305 * 155.35788 * 23 21 3 25 25 C 1.54383 * 102.25547 * 325.87208 * 24 23 21 26 26 O 1.43237 * 107.58667 * 21.34898 * 25 24 23 27 27 H 1.08998 * 109.47429 * 183.03742 * 1 2 3 28 28 H 1.09002 * 109.46644 * 303.04061 * 1 2 3 29 29 H 1.09002 * 109.47202 * 63.03622 * 1 2 3 30 30 H 1.08994 * 109.47154 * 240.00136 * 2 1 3 31 31 H 1.08997 * 109.47086 * 119.99811 * 2 1 3 32 32 H 1.00899 * 110.99237 * 291.92465 * 5 3 2 33 33 H 1.08995 * 109.47488 * 65.04575 * 6 5 3 34 34 H 1.08997 * 109.46931 * 305.04086 * 6 5 3 35 35 H 1.08002 * 119.87973 * 359.97367 * 8 7 6 36 36 H 1.08007 * 120.12964 * 179.97438 * 9 8 7 37 37 H 0.96994 * 120.00286 * 358.80079 * 14 13 11 38 38 H 1.07997 * 120.13181 * 179.70803 * 19 10 9 39 39 H 1.07999 * 119.87383 * 180.22992 * 20 19 10 40 40 H 1.09000 * 111.12639 * 273.27718 * 23 21 3 41 41 H 1.09003 * 111.12496 * 37.44243 * 23 21 3 42 42 H 1.09004 * 110.85400 * 207.67580 * 24 23 21 43 43 H 1.09006 * 110.84668 * 84.05707 * 24 23 21 44 44 H 1.09011 * 109.82600 * 261.84308 * 25 24 23 45 45 H 1.08998 * 109.90901 * 140.91085 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6566 1.9634 -0.8774 5 7 1.5778 2.1253 1.2158 6 6 1.9942 1.3950 2.4204 7 6 1.3995 2.0541 3.6381 8 6 0.1573 1.6494 4.1018 9 6 -0.3953 2.2439 5.2132 10 6 0.3055 3.2666 5.8790 11 6 -0.2520 3.8843 7.0222 12 1 -1.3241 3.9188 7.1486 13 6 0.5853 4.4512 7.9897 14 7 1.8373 4.0805 8.0694 15 14 -0.0850 5.7370 9.1674 16 1 -1.5198 5.9797 8.8710 17 1 0.6748 7.0023 9.0033 18 1 0.0573 5.2515 10.5635 19 6 1.5628 3.6736 5.3956 20 6 2.0984 3.0612 4.2856 21 6 3.5696 1.4426 -0.0347 22 1 3.9256 1.0757 -0.9974 23 6 4.1136 2.8683 0.2344 24 6 5.5285 2.5447 0.7865 25 6 5.2874 1.2269 1.5538 26 8 4.0926 0.6343 1.0313 27 1 -0.3634 -1.0262 0.0545 28 1 -0.3633 0.5603 0.8615 29 1 -0.3634 0.4660 -0.9160 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5773 2.2551 1.1993 33 1 3.0815 1.4073 2.4951 34 1 1.6459 0.3640 2.3587 35 1 -0.3790 0.8646 3.5890 36 1 -1.3634 1.9274 5.5725 37 1 2.1809 3.4003 7.4694 38 1 2.1071 4.4607 5.8961 39 1 3.0648 3.3693 3.9150 40 1 4.1744 3.4461 -0.6879 41 1 3.5096 3.3849 0.9803 42 1 5.8707 3.3294 1.4613 43 1 6.2378 2.3952 -0.0277 44 1 5.1626 1.4353 2.6165 45 1 6.1302 0.5517 1.4059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348380557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:49 Heat of formation + Delta-G solvation = -54.906849 kcal Electronic energy + Delta-G solvation = -23668.723059 eV Core-core repulsion = 20456.330732 eV Total energy + Delta-G solvation = -3212.392327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01720 -39.65560 -37.73098 -35.87602 -33.22959 -32.98023 -31.50530 -31.21882 -30.29609 -27.83546 -26.20065 -24.91074 -23.19062 -22.97580 -22.16643 -21.88045 -20.51470 -19.84482 -18.23858 -16.85755 -16.74347 -16.50184 -16.23985 -15.85100 -15.61938 -15.39255 -15.35136 -14.87347 -14.34751 -14.11248 -14.03522 -13.89786 -13.63045 -13.35749 -13.22872 -13.13663 -12.73776 -12.59539 -12.49161 -12.25130 -12.05682 -11.96022 -11.92530 -11.62199 -11.60954 -11.42645 -11.36516 -11.21842 -10.87672 -10.24227 -9.59392 -9.40934 -9.10285 -9.08329 -6.45181 0.90092 0.95995 1.49369 1.64091 1.78415 2.33696 2.69560 2.94497 3.40287 3.62513 3.69496 3.91025 4.07384 4.16340 4.16829 4.22993 4.31102 4.33039 4.41127 4.49297 4.50693 4.65236 4.71237 4.76297 4.81267 4.85223 4.93248 4.96008 5.02369 5.06833 5.10734 5.13832 5.20239 5.26014 5.34855 5.43872 5.47589 5.54076 5.76955 5.83426 5.87069 6.12385 6.18075 6.25943 6.29403 6.43164 6.60457 6.82276 6.98096 8.10322 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.004013 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.719097 B = 6975.323680 C = 7854.580050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.151 4.151 3 C 0.087 3.913 4 H 0.106 0.894 5 N -0.673 5.673 6 C 0.127 3.873 7 C -0.199 4.199 8 C -0.077 4.077 9 C -0.241 4.241 10 C 0.067 3.933 11 C -0.562 4.562 12 H 0.068 0.932 13 C -0.002 4.002 14 N -0.834 5.834 15 Si 1.125 2.875 16 H -0.265 1.265 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.237 4.237 20 C -0.065 4.065 21 C 0.086 3.914 22 H 0.086 0.914 23 C -0.144 4.144 24 C -0.150 4.150 25 C 0.045 3.955 26 O -0.393 6.393 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.336 0.664 33 H 0.087 0.913 34 H 0.025 0.975 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.284 0.716 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 -3.995 -16.721 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.190 4.190 3 C -0.023 4.023 4 H 0.123 0.877 5 N -0.304 5.304 6 C -0.001 4.001 7 C -0.201 4.201 8 C -0.096 4.096 9 C -0.261 4.261 10 C 0.064 3.936 11 C -0.591 4.591 12 H 0.086 0.914 13 C -0.216 4.216 14 N -0.459 5.459 15 Si 0.942 3.058 16 H -0.189 1.189 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.256 4.256 20 C -0.084 4.084 21 C 0.028 3.972 22 H 0.103 0.897 23 C -0.182 4.182 24 C -0.188 4.188 25 C -0.032 4.032 26 O -0.313 6.313 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.383 -2.799 -15.376 16.530 hybrid contribution -0.947 -1.730 -0.924 2.178 sum 4.436 -4.529 -16.300 17.490 Atomic orbital electron populations 1.21772 0.95521 1.01841 1.01757 1.22070 0.96168 0.98329 1.02439 1.21862 0.93686 0.93061 0.93732 0.87662 1.60792 1.18749 1.49840 1.01041 1.20760 1.00464 0.92928 0.85917 1.19569 0.96587 1.02867 1.01039 1.20743 0.95125 0.98327 0.95411 1.21129 1.01875 1.01317 1.01765 1.18012 0.92387 0.90343 0.92812 1.20802 0.96286 1.35868 1.06168 0.91415 1.28426 0.93471 0.99475 1.00185 1.70540 1.16400 1.24544 1.34391 0.82910 0.76091 0.73185 0.73633 1.18915 1.19128 1.19120 1.21141 0.99635 1.04115 1.00726 1.20636 0.98152 0.95481 0.94136 1.23130 0.93057 0.90380 0.90597 0.89674 1.23218 0.95266 0.96923 1.02779 1.23089 0.98096 0.96941 1.00637 1.23122 0.87528 0.94836 0.97676 1.88423 1.41379 1.49572 1.51912 0.92492 0.94065 0.91382 0.90739 0.92762 0.84462 0.89506 0.95740 0.86985 0.88887 0.90244 0.89616 0.87818 0.89000 0.90335 0.90306 0.89145 0.93064 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.69 71.98 0.70 -2.37 16 2 C -0.15 -3.25 4.78 30.59 0.15 -3.11 16 3 C 0.09 1.89 2.77 44.91 0.12 2.02 16 4 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 5 N -0.67 -18.94 4.92 -495.57 -2.44 -21.38 16 6 C 0.13 4.28 4.61 85.56 0.39 4.67 16 7 C -0.20 -8.37 5.36 -19.68 -0.11 -8.47 16 8 C -0.08 -3.39 9.67 22.22 0.21 -3.18 16 9 C -0.24 -12.20 9.80 22.73 0.22 -11.98 16 10 C 0.07 3.73 5.33 -21.29 -0.11 3.62 16 11 C -0.56 -31.82 9.02 23.46 0.21 -31.61 16 12 H 0.07 3.76 7.93 -2.91 -0.02 3.73 16 13 C 0.00 -0.08 5.05 85.26 0.43 0.35 16 14 N -0.83 -47.17 12.49 21.83 0.27 -46.89 16 15 Si 1.12 45.20 29.98 68.60 2.06 47.26 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 19 C -0.24 -12.66 7.78 22.73 0.18 -12.49 16 20 C -0.07 -3.03 9.67 22.22 0.21 -2.81 16 21 C 0.09 1.82 3.22 31.26 0.10 1.92 16 22 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 23 C -0.14 -3.00 6.45 32.05 0.21 -2.80 16 24 C -0.15 -2.84 7.02 31.85 0.22 -2.62 16 25 C 0.04 1.02 7.15 72.45 0.52 1.54 16 26 O -0.39 -10.19 7.53 -148.98 -1.12 -11.31 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.04 0.96 6.74 -2.39 -0.02 0.95 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.45 5.64 -2.39 -0.01 1.43 16 32 H 0.34 9.69 7.23 -89.69 -0.65 9.04 16 33 H 0.09 3.00 4.37 -2.39 -0.01 2.99 16 34 H 0.02 0.84 5.86 -2.39 -0.01 0.82 16 35 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.28 16.72 6.05 -92.71 -0.56 16.16 16 38 H 0.09 4.84 6.37 -2.91 -0.02 4.82 16 39 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 2.12 6.91 -2.39 -0.02 2.10 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.05 1.34 7.62 -2.38 -0.02 1.32 16 45 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -61.60 345.75 2.97 -58.63 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: 0.54 Total: 41.00 kcal Atomic # 6 Polarization: -70.98 SS G_CDS: 3.66 Total: -67.31 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -2.16 Total: -68.27 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.12 Total: -11.31 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.06 Total: 47.26 kcal Total: -61.60 2.97 -58.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348380557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.723 kcal (2) G-P(sol) polarization free energy of solvation -61.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds