Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.08999 * 109.46823 * 55.00413 * 3 2 1 5 5 C 1.53006 * 109.46808 * 175.00048 * 3 2 1 6 6 N 1.46498 * 109.47056 * 294.99760 * 3 2 1 7 7 C 1.46497 * 120.00284 * 299.72330 * 6 3 2 8 8 C 1.34784 * 119.99677 * 120.00410 * 6 3 2 9 9 O 1.21278 * 120.00063 * 359.71999 * 8 6 3 10 10 C 1.50697 * 119.99906 * 179.72485 * 8 6 3 11 11 C 1.52997 * 109.47008 * 179.97438 * 10 8 6 12 12 H 1.09000 * 109.47060 * 55.00475 * 11 10 8 13 13 C 1.50691 * 109.47499 * 295.00202 * 11 10 8 14 14 H 1.08001 * 119.99887 * 325.12227 * 13 11 10 15 15 C 1.37885 * 120.00444 * 145.12756 * 13 11 10 16 16 N 1.31512 * 120.00103 * 184.99211 * 15 13 11 17 17 Si 1.86804 * 119.99551 * 4.98435 * 15 13 11 18 18 H 1.48500 * 109.46744 * 84.73299 * 17 15 13 19 19 H 1.48494 * 109.46937 * 204.73081 * 17 15 13 20 20 H 1.48497 * 109.46942 * 324.73385 * 17 15 13 21 21 C 1.50702 * 109.47061 * 174.99643 * 11 10 8 22 22 C 1.38235 * 119.99772 * 64.69672 * 21 11 10 23 23 C 1.38230 * 119.99944 * 179.78698 * 22 21 11 24 24 C 1.38233 * 120.00156 * 0.43827 * 23 22 21 25 25 C 1.38236 * 119.99774 * 359.81606 * 24 23 22 26 26 C 1.38226 * 119.99948 * 359.97265 * 25 24 23 27 27 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47178 * 299.99989 * 1 2 3 29 29 H 1.08999 * 109.47240 * 60.00084 * 1 2 3 30 30 H 1.09001 * 109.47178 * 240.00011 * 2 1 3 31 31 H 1.08999 * 109.47240 * 119.99916 * 2 1 3 32 32 H 1.08998 * 109.47383 * 299.99780 * 5 3 2 33 33 H 1.08999 * 109.47131 * 60.00553 * 5 3 2 34 34 H 1.09003 * 109.46562 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47653 * 270.27656 * 7 6 3 36 36 H 1.09000 * 109.46951 * 30.28312 * 7 6 3 37 37 H 1.09004 * 109.47208 * 150.27359 * 7 6 3 38 38 H 1.09000 * 109.47168 * 299.99586 * 10 8 6 39 39 H 1.09005 * 109.47013 * 59.99898 * 10 8 6 40 40 H 0.97003 * 119.99557 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99858 * 0.02562 * 22 21 11 42 42 H 1.08005 * 119.99925 * 180.27798 * 23 22 21 43 43 H 1.07997 * 120.00042 * 179.83268 * 24 23 22 44 44 H 1.07997 * 119.99867 * 180.02562 * 25 24 23 45 45 H 1.08005 * 120.00036 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0974 -1.2518 7 6 2.1189 1.5625 -2.5334 8 6 0.8714 3.1956 -1.2241 9 8 0.4852 3.6384 -0.1632 10 6 0.4778 3.8729 -2.5114 11 6 -0.4036 5.0844 -2.2015 12 1 0.1156 5.7428 -1.5050 13 6 -1.6972 4.6197 -1.5838 14 1 -2.1443 3.6898 -1.9026 15 6 -2.3101 5.3818 -0.6118 16 7 -3.3850 4.9307 -0.0031 17 14 -1.6133 7.0549 -0.1594 18 1 -2.1360 8.0792 -1.0989 19 1 -2.0186 7.4016 1.2265 20 1 -0.1314 7.0138 -0.2462 21 6 -0.6959 5.8324 -3.4767 22 6 -1.4370 5.2307 -4.4765 23 6 -1.7089 5.9184 -5.6444 24 6 -1.2320 7.2044 -5.8163 25 6 -0.4864 7.8042 -4.8186 26 6 -0.2183 7.1181 -3.6490 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8532 0.9570 1.0571 33 1 3.9994 0.9053 -0.7161 34 1 3.9281 2.4720 0.1262 35 1 3.0714 2.0236 -2.7946 36 1 2.2480 0.4833 -2.4512 37 1 1.3842 1.7824 -3.3080 38 1 1.3740 4.2005 -3.0384 39 1 -0.0754 3.1719 -3.1365 40 1 -3.8159 5.4667 0.6810 41 1 -1.8069 4.2248 -4.3435 42 1 -2.2917 5.4499 -6.4237 43 1 -1.4421 7.7407 -6.7299 44 1 -0.1142 8.8091 -4.9527 45 1 0.3639 7.5869 -2.8693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355460511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -20.125369 kcal Electronic energy + Delta-G solvation = -23885.355011 eV Core-core repulsion = 20674.470922 eV Total energy + Delta-G solvation = -3210.884089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.58720 -38.50904 -36.30365 -34.03853 -32.84531 -31.58023 -30.21380 -29.93782 -28.74604 -26.56308 -25.89447 -23.58938 -22.64160 -21.87623 -20.84716 -19.44255 -18.31084 -16.94122 -16.75943 -15.98254 -15.54433 -15.21725 -14.51930 -14.23225 -13.97180 -13.66737 -13.46986 -13.37288 -12.88899 -12.83951 -12.68333 -12.53180 -12.35411 -12.21897 -12.03222 -11.80494 -11.76767 -11.51593 -11.13291 -10.92881 -10.78190 -10.76517 -10.50979 -10.48345 -10.32642 -9.82815 -9.57931 -9.03696 -8.85546 -8.40276 -8.22900 -8.14533 -7.80841 -5.95137 -3.91264 2.08662 2.14591 3.43149 3.47037 3.48552 3.49341 3.52756 4.52379 4.58878 4.84966 5.19064 5.26031 5.28245 5.30924 5.49619 5.51394 5.55022 5.56583 5.60563 5.65687 5.68965 5.74023 5.81482 5.95560 5.97030 6.03777 6.09297 6.12015 6.18220 6.24076 6.26726 6.33922 6.39993 6.60656 6.64415 6.69872 6.83081 7.03372 7.08897 7.13806 7.27035 7.60023 7.73817 7.84988 7.98080 8.56282 9.03075 9.06559 9.69690 11.18116 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.005836 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.963903 B = 4796.430015 C = 5683.626275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.133 3.867 4 H 0.100 0.900 5 C -0.158 4.158 6 N -0.626 5.626 7 C 0.082 3.918 8 C 0.516 3.484 9 O -0.498 6.498 10 C -0.112 4.112 11 C 0.045 3.955 12 H 0.057 0.943 13 C -0.483 4.483 14 H 0.070 0.930 15 C 0.087 3.913 16 N -0.898 5.898 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.261 1.261 21 C -0.039 4.039 22 C -0.102 4.102 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.124 4.124 26 C -0.141 4.141 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.261 0.739 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.002 -6.060 -7.036 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.030 3.970 4 H 0.118 0.882 5 C -0.216 4.216 6 N -0.363 5.363 7 C -0.061 4.061 8 C 0.305 3.695 9 O -0.370 6.370 10 C -0.153 4.153 11 C 0.026 3.974 12 H 0.075 0.925 13 C -0.520 4.520 14 H 0.088 0.912 15 C -0.115 4.115 16 N -0.536 5.536 17 Si 0.698 3.302 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.187 1.187 21 C -0.040 4.040 22 C -0.120 4.120 23 C -0.144 4.144 24 C -0.168 4.168 25 C -0.142 4.142 26 C -0.159 4.159 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.618 -5.753 -6.287 14.409 hybrid contribution 0.175 0.887 0.206 0.927 sum 11.793 -4.866 -6.082 14.133 Atomic orbital electron populations 1.21688 0.94938 1.00739 1.03190 1.21865 0.97043 0.96283 1.01573 1.20996 0.94046 0.93213 0.88766 0.88179 1.22118 0.95885 1.02049 1.01542 1.48007 1.52618 1.29694 1.05999 1.21626 0.99496 0.99009 0.85994 1.20817 0.76901 0.79455 0.92353 1.90723 1.50991 1.63098 1.32170 1.21653 0.99711 0.99438 0.94468 1.18319 0.96659 0.92047 0.90365 0.92504 1.20565 1.04361 1.07470 1.19568 0.91161 1.24855 0.94366 0.97396 0.94927 1.69884 1.20596 1.37575 1.25538 0.86975 0.80314 0.85331 0.77548 1.20305 1.21845 1.18657 1.20813 0.93382 0.94141 0.95614 1.20967 0.97936 1.00389 0.92686 1.21061 1.00385 0.95070 0.97896 1.20859 1.01082 0.95916 0.98978 1.20957 0.99757 0.99079 0.94423 1.21080 1.01804 0.95696 0.97314 0.93420 0.92371 0.92251 0.92142 0.91574 0.92018 0.92742 0.92474 0.93489 0.91758 0.91054 0.91565 0.89976 0.92905 0.86244 0.87172 0.87406 0.87353 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.80 37.16 0.36 -1.80 16 2 C -0.13 -1.57 5.36 -26.73 -0.14 -1.72 16 3 C 0.13 1.89 2.64 -67.93 -0.18 1.71 16 4 H 0.10 1.73 6.90 -51.93 -0.36 1.37 16 5 C -0.16 -1.77 9.19 37.16 0.34 -1.43 16 6 N -0.63 -9.64 2.21 -173.93 -0.39 -10.03 16 7 C 0.08 0.94 9.29 59.85 0.56 1.49 16 8 C 0.52 10.35 7.42 -10.98 -0.08 10.27 16 9 O -0.50 -12.43 14.31 5.56 0.08 -12.35 16 10 C -0.11 -2.14 3.52 -27.89 -0.10 -2.24 16 11 C 0.05 1.05 1.21 -92.93 -0.11 0.93 16 12 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16 13 C -0.48 -13.31 6.87 -34.44 -0.24 -13.55 16 14 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 15 C 0.09 2.57 5.47 -17.82 -0.10 2.48 16 16 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 17 Si 0.87 23.02 27.15 -169.99 -4.62 18.40 16 18 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.79 7.11 56.52 0.40 -7.38 16 20 H -0.26 -6.69 6.06 56.52 0.34 -6.35 16 21 C -0.04 -0.82 4.55 -104.62 -0.48 -1.29 16 22 C -0.10 -1.98 8.87 -39.59 -0.35 -2.33 16 23 C -0.13 -2.14 10.05 -39.59 -0.40 -2.54 16 24 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 25 C -0.12 -2.13 10.05 -39.59 -0.40 -2.53 16 26 C -0.14 -2.77 9.43 -39.59 -0.37 -3.15 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 30 H 0.06 0.65 6.49 -51.93 -0.34 0.31 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.61 6.35 -51.93 -0.33 0.28 16 37 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 38 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 39 H 0.08 1.46 7.12 -51.93 -0.37 1.09 16 40 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 41 H 0.12 2.29 7.80 -52.49 -0.41 1.88 16 42 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.11 2.08 7.95 -52.48 -0.42 1.67 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -33.24 358.33 -8.27 -41.51 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.44 Total: 3.05 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -2.08 Total: -18.53 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.39 Total: -37.49 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.62 Total: 18.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.24 -8.27 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355460511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.383 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds