Wall clock time and date at job start Tue Mar 31 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.08999 * 109.46823 * 55.00413 * 3 2 1 5 5 C 1.53006 * 109.46808 * 175.00048 * 3 2 1 6 6 N 1.46498 * 109.47056 * 294.99760 * 3 2 1 7 7 C 1.46497 * 120.00284 * 299.72330 * 6 3 2 8 8 C 1.34784 * 119.99677 * 120.00410 * 6 3 2 9 9 O 1.21278 * 120.00063 * 359.71999 * 8 6 3 10 10 C 1.50697 * 119.99906 * 179.72485 * 8 6 3 11 11 C 1.52997 * 109.47008 * 179.97438 * 10 8 6 12 12 H 1.09000 * 109.47060 * 55.00475 * 11 10 8 13 13 C 1.50691 * 109.47499 * 295.00202 * 11 10 8 14 14 H 1.08001 * 119.99887 * 325.12227 * 13 11 10 15 15 C 1.37885 * 120.00444 * 145.12756 * 13 11 10 16 16 N 1.31512 * 120.00103 * 184.99211 * 15 13 11 17 17 Si 1.86804 * 119.99551 * 4.98435 * 15 13 11 18 18 H 1.48500 * 109.46744 * 84.73299 * 17 15 13 19 19 H 1.48494 * 109.46937 * 204.73081 * 17 15 13 20 20 H 1.48497 * 109.46942 * 324.73385 * 17 15 13 21 21 C 1.50702 * 109.47061 * 174.99643 * 11 10 8 22 22 C 1.38235 * 119.99772 * 64.69672 * 21 11 10 23 23 C 1.38230 * 119.99944 * 179.78698 * 22 21 11 24 24 C 1.38233 * 120.00156 * 0.43827 * 23 22 21 25 25 C 1.38236 * 119.99774 * 359.81606 * 24 23 22 26 26 C 1.38226 * 119.99948 * 359.97265 * 25 24 23 27 27 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47178 * 299.99989 * 1 2 3 29 29 H 1.08999 * 109.47240 * 60.00084 * 1 2 3 30 30 H 1.09001 * 109.47178 * 240.00011 * 2 1 3 31 31 H 1.08999 * 109.47240 * 119.99916 * 2 1 3 32 32 H 1.08998 * 109.47383 * 299.99780 * 5 3 2 33 33 H 1.08999 * 109.47131 * 60.00553 * 5 3 2 34 34 H 1.09003 * 109.46562 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47653 * 270.27656 * 7 6 3 36 36 H 1.09000 * 109.46951 * 30.28312 * 7 6 3 37 37 H 1.09004 * 109.47208 * 150.27359 * 7 6 3 38 38 H 1.09000 * 109.47168 * 299.99586 * 10 8 6 39 39 H 1.09005 * 109.47013 * 59.99898 * 10 8 6 40 40 H 0.97003 * 119.99557 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99858 * 0.02562 * 22 21 11 42 42 H 1.08005 * 119.99925 * 180.27798 * 23 22 21 43 43 H 1.07997 * 120.00042 * 179.83268 * 24 23 22 44 44 H 1.07997 * 119.99867 * 180.02562 * 25 24 23 45 45 H 1.08005 * 120.00036 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0974 -1.2518 7 6 2.1189 1.5625 -2.5334 8 6 0.8714 3.1956 -1.2241 9 8 0.4852 3.6384 -0.1632 10 6 0.4778 3.8729 -2.5114 11 6 -0.4036 5.0844 -2.2015 12 1 0.1156 5.7428 -1.5050 13 6 -1.6972 4.6197 -1.5838 14 1 -2.1443 3.6898 -1.9026 15 6 -2.3101 5.3818 -0.6118 16 7 -3.3850 4.9307 -0.0031 17 14 -1.6133 7.0549 -0.1594 18 1 -2.1360 8.0792 -1.0989 19 1 -2.0186 7.4016 1.2265 20 1 -0.1314 7.0138 -0.2462 21 6 -0.6959 5.8324 -3.4767 22 6 -1.4370 5.2307 -4.4765 23 6 -1.7089 5.9184 -5.6444 24 6 -1.2320 7.2044 -5.8163 25 6 -0.4864 7.8042 -4.8186 26 6 -0.2183 7.1181 -3.6490 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8532 0.9570 1.0571 33 1 3.9994 0.9053 -0.7161 34 1 3.9281 2.4720 0.1262 35 1 3.0714 2.0236 -2.7946 36 1 2.2480 0.4833 -2.4512 37 1 1.3842 1.7824 -3.3080 38 1 1.3740 4.2005 -3.0384 39 1 -0.0754 3.1719 -3.1365 40 1 -3.8159 5.4667 0.6810 41 1 -1.8069 4.2248 -4.3435 42 1 -2.2917 5.4499 -6.4237 43 1 -1.4421 7.7407 -6.7299 44 1 -0.1142 8.8091 -4.9527 45 1 0.3639 7.5869 -2.8693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355460511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:08 Heat of formation + Delta-G solvation = -39.359830 kcal Electronic energy + Delta-G solvation = -23886.189080 eV Core-core repulsion = 20674.470922 eV Total energy + Delta-G solvation = -3211.718158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04202 -39.93645 -37.68055 -35.81665 -34.19506 -33.54409 -31.61428 -31.07808 -30.15722 -27.89475 -27.53369 -24.86373 -24.20453 -23.30021 -22.14882 -20.95454 -19.69128 -19.04154 -18.21343 -17.35963 -16.89970 -16.62705 -16.23732 -15.77737 -15.50623 -15.04465 -14.76491 -14.66546 -14.53244 -14.15434 -14.13596 -13.94594 -13.79866 -13.55320 -13.35775 -13.22407 -12.99485 -12.86222 -12.77225 -12.59203 -12.10278 -12.00169 -11.91434 -11.87694 -11.80433 -11.59031 -11.46133 -11.01476 -10.70005 -10.39169 -9.63953 -9.42411 -9.31111 -8.22909 -6.18189 0.66823 0.72203 1.26884 1.30764 1.36699 1.96371 2.24531 2.38065 3.07395 3.21033 3.73619 4.04856 4.11128 4.15165 4.19100 4.30089 4.30663 4.36602 4.43451 4.48312 4.51357 4.59894 4.65058 4.71112 4.75618 4.83960 4.85806 4.90634 4.96459 5.03594 5.05252 5.11761 5.19968 5.25622 5.31228 5.36921 5.39854 5.43066 5.68912 5.75589 5.81469 5.89189 6.01734 6.32266 6.35450 6.62662 6.79896 7.44510 7.56107 8.94571 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.005836 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.963903 B = 4796.430015 C = 5683.626275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.125 3.875 4 H 0.056 0.944 5 C -0.147 4.147 6 N -0.617 5.617 7 C 0.073 3.927 8 C 0.507 3.493 9 O -0.564 6.564 10 C -0.106 4.106 11 C 0.048 3.952 12 H 0.034 0.966 13 C -0.458 4.458 14 H 0.033 0.967 15 C 0.024 3.976 16 N -0.952 5.952 17 Si 0.920 3.080 18 H -0.265 1.265 19 H -0.299 1.299 20 H -0.253 1.253 21 C -0.064 4.064 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.122 4.122 26 C -0.158 4.158 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.257 0.743 41 H 0.109 0.891 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.558 -6.152 -10.257 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.022 3.978 4 H 0.074 0.926 5 C -0.205 4.205 6 N -0.352 5.352 7 C -0.069 4.069 8 C 0.296 3.704 9 O -0.441 6.441 10 C -0.146 4.146 11 C 0.029 3.971 12 H 0.052 0.948 13 C -0.495 4.495 14 H 0.051 0.949 15 C -0.172 4.172 16 N -0.594 5.594 17 Si 0.747 3.253 18 H -0.190 1.190 19 H -0.226 1.226 20 H -0.178 1.178 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.158 4.158 25 C -0.140 4.140 26 C -0.176 4.176 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.127 0.873 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.235 -5.879 -9.566 18.131 hybrid contribution -0.566 0.808 1.053 1.443 sum 13.669 -5.071 -8.513 16.883 Atomic orbital electron populations 1.21667 0.97329 1.01227 1.00180 1.21833 0.94667 0.95118 1.04057 1.21150 0.96211 0.93693 0.86790 0.92563 1.22028 0.92923 1.01855 1.03664 1.48025 1.50829 1.28088 1.08245 1.21964 1.00436 1.00773 0.83733 1.21072 0.77074 0.80519 0.91701 1.90698 1.53968 1.65377 1.34086 1.21557 1.00427 0.98069 0.94511 1.18157 0.94472 0.93407 0.91083 0.94751 1.20760 1.05176 1.05251 1.18360 0.94866 1.25573 0.95016 1.00863 0.95761 1.70031 1.22867 1.39160 1.27351 0.86156 0.80154 0.82017 0.76942 1.18996 1.22609 1.17769 1.20519 0.95698 0.94932 0.95291 1.21000 0.98434 1.00480 0.93741 1.21410 0.99831 0.95465 0.97352 1.21347 0.99063 0.95423 0.99930 1.21335 0.99080 1.00288 0.93319 1.21200 1.02473 0.95249 0.98685 0.91082 0.95653 0.95037 0.89256 0.89255 0.90218 0.90105 0.93898 0.91140 0.89028 0.90864 0.88265 0.88991 0.93371 0.87274 0.84150 0.83440 0.84162 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 9.80 71.98 0.71 -3.67 16 2 C -0.12 -2.68 5.36 30.59 0.16 -2.52 16 3 C 0.12 3.49 2.64 44.99 0.12 3.61 16 4 H 0.06 2.08 6.90 -2.39 -0.02 2.07 16 5 C -0.15 -2.96 9.19 71.98 0.66 -2.30 16 6 N -0.62 -18.75 2.21 -822.59 -1.82 -20.57 16 7 C 0.07 1.44 9.29 127.77 1.19 2.63 16 8 C 0.51 21.07 7.42 87.65 0.65 21.72 16 9 O -0.56 -30.12 14.31 -3.02 -0.04 -30.16 16 10 C -0.11 -4.06 3.52 29.85 0.10 -3.96 16 11 C 0.05 2.28 1.21 -12.29 -0.01 2.27 16 12 H 0.03 1.78 4.70 -2.39 -0.01 1.77 16 13 C -0.46 -26.67 6.87 25.60 0.18 -26.49 16 14 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 15 C 0.02 1.50 5.47 84.66 0.46 1.96 16 16 N -0.95 -63.68 13.96 21.45 0.30 -63.38 16 17 Si 0.92 49.57 27.15 68.60 1.86 51.44 16 18 H -0.26 -13.53 7.11 99.48 0.71 -12.82 16 19 H -0.30 -16.24 7.11 99.48 0.71 -15.53 16 20 H -0.25 -13.11 6.06 99.48 0.60 -12.51 16 21 C -0.06 -2.67 4.55 -19.87 -0.09 -2.76 16 22 C -0.12 -4.50 8.87 22.27 0.20 -4.30 16 23 C -0.12 -3.77 10.05 22.27 0.22 -3.55 16 24 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 25 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 26 C -0.16 -5.97 9.43 22.27 0.21 -5.76 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.03 1.08 7.75 -2.39 -0.02 1.07 16 30 H 0.09 1.54 6.49 -2.39 -0.02 1.53 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.35 6.35 -2.39 -0.02 1.33 16 37 H 0.07 1.45 6.44 -2.39 -0.02 1.44 16 38 H 0.10 3.12 8.11 -2.39 -0.02 3.10 16 39 H 0.09 3.31 7.12 -2.38 -0.02 3.29 16 40 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 41 H 0.11 4.26 7.80 -2.91 -0.02 4.23 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 45 H 0.11 3.96 7.95 -2.91 -0.02 3.94 16 Total: -1.00 -80.11 358.33 6.34 -73.77 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.84 Total: 19.23 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 5.20 Total: -30.32 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.52 Total: -83.95 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.04 Total: -30.16 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 1.86 Total: 51.44 kcal Total: -80.11 6.34 -73.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355460511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.406 kcal (2) G-P(sol) polarization free energy of solvation -80.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds