Wall clock time and date at job start Tue Mar 31 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47247 * 2 1 4 4 H 1.08998 * 109.47459 * 54.99703 * 3 2 1 5 5 C 1.53001 * 109.47214 * 174.99864 * 3 2 1 6 6 N 1.46502 * 109.47421 * 294.99665 * 3 2 1 7 7 C 1.46505 * 120.00118 * 300.00873 * 6 3 2 8 8 C 1.34778 * 119.99952 * 119.99760 * 6 3 2 9 9 O 1.21276 * 120.00216 * 0.02562 * 8 6 3 10 10 C 1.50707 * 119.99713 * 180.02562 * 8 6 3 11 11 C 1.53002 * 109.46896 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.46978 * 306.00423 * 11 10 8 13 13 C 1.50697 * 109.47073 * 66.00274 * 11 10 8 14 14 H 1.07997 * 119.99962 * 35.43579 * 13 11 10 15 15 C 1.37879 * 119.99825 * 215.43261 * 13 11 10 16 16 N 1.31520 * 119.99812 * 175.73422 * 15 13 11 17 17 Si 1.86795 * 120.00065 * 355.73656 * 15 13 11 18 18 H 1.48502 * 109.47615 * 94.38632 * 17 15 13 19 19 H 1.48506 * 109.47214 * 214.38279 * 17 15 13 20 20 H 1.48493 * 109.47342 * 334.38282 * 17 15 13 21 21 C 1.50694 * 109.47205 * 186.00362 * 11 10 8 22 22 C 1.38236 * 119.99959 * 113.56019 * 21 11 10 23 23 C 1.38239 * 120.00042 * 179.97438 * 22 21 11 24 24 C 1.38240 * 119.99712 * 359.97438 * 23 22 21 25 25 C 1.38237 * 120.00327 * 0.02562 * 24 23 22 26 26 C 1.38232 * 120.00111 * 293.58862 * 21 11 10 27 27 H 1.08995 * 109.47764 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47062 * 300.00522 * 1 2 3 29 29 H 1.09000 * 109.46586 * 59.99669 * 1 2 3 30 30 H 1.08997 * 109.46593 * 239.99719 * 2 1 3 31 31 H 1.08999 * 109.46549 * 119.99779 * 2 1 3 32 32 H 1.09004 * 109.46748 * 60.00216 * 5 3 2 33 33 H 1.08994 * 109.47269 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47153 * 299.99939 * 5 3 2 35 35 H 1.08999 * 109.46447 * 269.99842 * 7 6 3 36 36 H 1.08996 * 109.47045 * 29.99197 * 7 6 3 37 37 H 1.08996 * 109.47372 * 149.99807 * 7 6 3 38 38 H 1.08998 * 109.47216 * 60.00817 * 10 8 6 39 39 H 1.08995 * 109.47056 * 300.00074 * 10 8 6 40 40 H 0.97000 * 120.00112 * 180.02562 * 16 15 13 41 41 H 1.07994 * 120.00098 * 0.02562 * 22 21 11 42 42 H 1.07994 * 120.00158 * 180.02562 * 23 22 21 43 43 H 1.07999 * 119.99677 * 179.72193 * 24 23 22 44 44 H 1.07996 * 120.00145 * 179.97438 * 25 24 23 45 45 H 1.08007 * 119.99976 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5649 1.4442 0.1258 6 7 1.6526 2.0974 -1.2518 7 6 2.1140 1.5588 -2.5338 8 6 0.8715 3.1955 -1.2242 9 8 0.4898 3.6415 -0.1630 10 6 0.4725 3.8689 -2.5120 11 6 -0.4068 5.0820 -2.2019 12 1 -1.2460 4.7727 -1.5788 13 6 0.4068 6.1184 -1.4705 14 1 1.4495 6.2575 -1.7149 15 6 -0.1800 6.8889 -0.4892 16 7 0.5487 7.7341 0.2069 17 14 -2.0099 6.7325 -0.1483 18 1 -2.2266 5.7666 0.9587 19 1 -2.5567 8.0582 0.2374 20 1 -2.7014 6.2483 -1.3700 21 6 -0.9263 5.6681 -3.4894 22 6 -2.2781 5.6208 -3.7745 23 6 -2.7547 6.1589 -4.9553 24 6 -1.8795 6.7448 -5.8507 25 6 -0.5277 6.7922 -5.5656 26 6 -0.0510 6.2526 -4.3855 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9995 0.9052 -0.7161 33 1 3.9283 2.4718 0.1253 34 1 3.8533 0.9569 1.0572 35 1 3.0654 2.0192 -2.7999 36 1 2.2436 0.4799 -2.4490 37 1 1.3763 1.7766 -3.3061 38 1 -0.0833 3.1661 -3.1325 39 1 1.3664 4.1949 -3.0436 40 1 0.1359 8.2759 0.8975 41 1 -2.9619 5.1641 -3.0744 42 1 -3.8108 6.1223 -5.1779 43 1 -2.2513 7.1612 -6.7752 44 1 0.1561 7.2496 -6.2653 45 1 1.0053 6.2896 -4.1628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355460512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:11 Heat of formation + Delta-G solvation = -40.332438 kcal Electronic energy + Delta-G solvation = -23850.490628 eV Core-core repulsion = 20638.730295 eV Total energy + Delta-G solvation = -3211.760333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.05004 -39.92959 -37.68801 -35.81459 -34.19160 -33.54066 -31.59917 -31.07757 -30.15589 -27.88962 -27.54488 -24.87228 -24.19338 -23.29830 -22.14030 -20.94766 -19.69635 -19.00823 -18.20853 -17.33817 -16.92536 -16.62575 -16.27681 -15.77179 -15.45427 -14.94972 -14.88455 -14.61174 -14.52538 -14.25187 -14.07670 -13.89696 -13.82610 -13.48937 -13.34337 -13.18155 -13.01292 -12.90851 -12.63137 -12.60728 -12.10403 -12.01649 -11.88130 -11.86949 -11.76956 -11.58595 -11.48091 -11.04652 -10.69490 -10.40119 -9.60189 -9.43574 -9.28778 -8.22555 -6.18777 0.69102 0.74063 1.30645 1.34936 1.41552 1.95305 2.23743 2.41038 3.09252 3.23294 3.73039 4.03891 4.13489 4.14256 4.20857 4.30219 4.32544 4.36528 4.45351 4.49075 4.50872 4.60985 4.63398 4.72166 4.74642 4.84453 4.88059 4.90393 4.96821 5.03169 5.07672 5.11269 5.20270 5.25673 5.29682 5.38349 5.41080 5.43032 5.68789 5.77866 5.83350 5.88128 6.03715 6.33369 6.37035 6.61902 6.80075 7.45040 7.54871 8.94701 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.005797 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.004307 B = 4829.029455 C = 5660.631397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.125 3.875 4 H 0.056 0.944 5 C -0.151 4.151 6 N -0.617 5.617 7 C 0.073 3.927 8 C 0.508 3.492 9 O -0.566 6.566 10 C -0.107 4.107 11 C 0.059 3.941 12 H 0.029 0.971 13 C -0.462 4.462 14 H 0.031 0.969 15 C 0.022 3.978 16 N -0.954 5.954 17 Si 0.918 3.082 18 H -0.293 1.293 19 H -0.296 1.296 20 H -0.220 1.220 21 C -0.064 4.064 22 C -0.151 4.151 23 C -0.124 4.124 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.118 4.118 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.257 0.743 41 H 0.109 0.891 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 -16.166 -11.231 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.022 3.978 4 H 0.074 0.926 5 C -0.209 4.209 6 N -0.352 5.352 7 C -0.069 4.069 8 C 0.297 3.703 9 O -0.443 6.443 10 C -0.147 4.147 11 C 0.040 3.960 12 H 0.048 0.952 13 C -0.500 4.500 14 H 0.050 0.950 15 C -0.174 4.174 16 N -0.596 5.596 17 Si 0.744 3.256 18 H -0.220 1.220 19 H -0.223 1.223 20 H -0.142 1.142 21 C -0.064 4.064 22 C -0.169 4.169 23 C -0.142 4.142 24 C -0.157 4.157 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.127 0.873 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.157 0.843 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.097 -15.814 -10.551 19.011 hybrid contribution -0.482 0.761 1.181 1.485 sum -0.385 -15.053 -9.371 17.735 Atomic orbital electron populations 1.21694 0.96582 1.01661 1.00557 1.21825 0.95535 0.94330 1.04040 1.21138 0.95761 0.94086 0.86805 0.92598 1.22051 0.93866 1.01308 1.03656 1.48028 1.50981 1.27930 1.08214 1.21966 1.00393 1.00731 0.83800 1.21087 0.77802 0.79705 0.91718 1.90701 1.55748 1.63808 1.34050 1.21580 1.01440 0.97273 0.94382 1.17988 0.94875 0.92528 0.90651 0.95239 1.20787 0.95655 1.16840 1.16745 0.95032 1.25629 1.01439 0.94943 0.95422 1.70043 1.37411 1.27766 1.24392 0.86196 0.82982 0.76290 0.80105 1.22009 1.22327 1.14220 1.20486 0.93777 0.97107 0.95064 1.21246 0.94948 1.02597 0.98074 1.21333 1.00588 0.98504 0.93799 1.21337 0.93146 1.00763 1.00446 1.21388 0.96564 0.99506 0.96835 1.20993 0.99565 0.98754 0.94304 0.90769 0.95140 0.94214 0.89252 0.89473 0.90063 0.94971 0.90153 0.92312 0.88550 0.90167 0.88032 0.89119 0.93427 0.87297 0.84212 0.83552 0.84337 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.80 71.98 0.71 -2.78 16 2 C -0.12 -2.40 5.36 30.59 0.16 -2.24 16 3 C 0.13 3.53 2.64 44.99 0.12 3.65 16 4 H 0.06 2.08 6.90 -2.39 -0.02 2.07 16 5 C -0.15 -3.48 9.19 71.98 0.66 -2.82 16 6 N -0.62 -18.71 2.21 -822.60 -1.82 -20.54 16 7 C 0.07 1.44 9.30 127.77 1.19 2.63 16 8 C 0.51 20.97 7.43 87.66 0.65 21.62 16 9 O -0.57 -30.13 14.35 -3.02 -0.04 -30.17 16 10 C -0.11 -4.07 3.52 29.85 0.11 -3.96 16 11 C 0.06 2.76 1.17 -12.29 -0.01 2.75 16 12 H 0.03 1.48 5.06 -2.39 -0.01 1.47 16 13 C -0.46 -26.90 6.87 25.60 0.18 -26.73 16 14 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 15 C 0.02 1.35 5.47 84.65 0.46 1.81 16 16 N -0.95 -64.04 13.96 21.45 0.30 -63.74 16 17 Si 0.92 48.97 26.94 68.60 1.85 50.82 16 18 H -0.29 -16.23 7.11 99.48 0.71 -15.52 16 19 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 20 H -0.22 -10.37 4.53 99.48 0.45 -9.92 16 21 C -0.06 -2.63 4.57 -19.87 -0.09 -2.72 16 22 C -0.15 -5.58 8.55 22.27 0.19 -5.39 16 23 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 24 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 25 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 26 C -0.12 -4.48 8.92 22.27 0.20 -4.28 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 1.05 7.75 -2.39 -0.02 1.03 16 30 H 0.09 1.35 6.47 -2.39 -0.02 1.33 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.43 7.67 -2.38 -0.02 1.41 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.32 6.34 -2.39 -0.02 1.30 16 37 H 0.08 1.45 6.44 -2.39 -0.02 1.44 16 38 H 0.10 3.12 7.40 -2.39 -0.02 3.10 16 39 H 0.09 3.28 8.01 -2.39 -0.02 3.26 16 40 H 0.26 16.47 8.31 -92.71 -0.77 15.69 16 41 H 0.11 4.00 7.09 -2.91 -0.02 3.98 16 42 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 43 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 44 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 45 H 0.11 4.22 7.88 -2.91 -0.02 4.20 16 Total: -1.00 -80.44 355.54 6.16 -74.28 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.69 Total: 18.59 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 5.19 Total: -29.24 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -1.52 Total: -84.28 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.04 Total: -30.17 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.85 Total: 50.82 kcal Total: -80.44 6.16 -74.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355460512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.948 kcal (2) G-P(sol) polarization free energy of solvation -80.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds