Wall clock time and date at job start Tue Mar 31 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47020 * 2 1 4 4 H 1.08998 * 109.47008 * 304.99573 * 3 2 1 5 5 C 1.52994 * 109.47440 * 184.99775 * 3 2 1 6 6 N 1.46502 * 109.46963 * 64.99742 * 3 2 1 7 7 C 1.46494 * 120.00355 * 60.00182 * 6 3 2 8 8 C 1.34778 * 119.99571 * 240.00410 * 6 3 2 9 9 O 1.21283 * 120.00463 * 359.97438 * 8 6 3 10 10 C 1.50706 * 120.00010 * 180.02562 * 8 6 3 11 11 C 1.52995 * 109.47514 * 179.97438 * 10 8 6 12 12 H 1.09008 * 109.46715 * 55.00049 * 11 10 8 13 13 C 1.50694 * 109.47256 * 295.00358 * 11 10 8 14 14 H 1.08007 * 119.99955 * 325.83666 * 13 11 10 15 15 C 1.37879 * 120.00414 * 145.84604 * 13 11 10 16 16 N 1.31515 * 119.99666 * 6.11128 * 15 13 11 17 17 Si 1.86797 * 120.00187 * 186.11960 * 15 13 11 18 18 H 1.48505 * 109.46955 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47202 * 119.99413 * 17 15 13 20 20 H 1.48504 * 109.46880 * 239.99576 * 17 15 13 21 21 C 1.50698 * 109.47280 * 174.99827 * 11 10 8 22 22 C 1.38233 * 119.99930 * 63.47020 * 21 11 10 23 23 C 1.38240 * 119.99920 * 179.78975 * 22 21 11 24 24 C 1.38233 * 119.99789 * 0.44131 * 23 22 21 25 25 C 1.38238 * 120.00486 * 359.81239 * 24 23 22 26 26 C 1.38238 * 119.99565 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46859 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47792 * 300.00172 * 1 2 3 29 29 H 1.09005 * 109.46699 * 60.00542 * 1 2 3 30 30 H 1.08995 * 109.47792 * 239.99828 * 2 1 3 31 31 H 1.08999 * 109.47107 * 119.99313 * 2 1 3 32 32 H 1.09000 * 109.47213 * 59.99212 * 5 3 2 33 33 H 1.09000 * 109.47648 * 180.02562 * 5 3 2 34 34 H 1.09009 * 109.47291 * 300.00111 * 5 3 2 35 35 H 1.09002 * 109.47328 * 270.00067 * 7 6 3 36 36 H 1.09001 * 109.47032 * 29.99541 * 7 6 3 37 37 H 1.08998 * 109.47392 * 150.00200 * 7 6 3 38 38 H 1.08999 * 109.46670 * 299.99818 * 10 8 6 39 39 H 1.09003 * 109.46971 * 59.98911 * 10 8 6 40 40 H 0.97003 * 120.00037 * 180.02562 * 16 15 13 41 41 H 1.08002 * 119.99998 * 0.02562 * 22 21 11 42 42 H 1.07994 * 119.99800 * 180.28015 * 23 22 21 43 43 H 1.07997 * 119.99929 * 179.83654 * 24 23 22 44 44 H 1.07989 * 120.00464 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00035 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4445 -0.1257 6 7 1.6523 2.0975 1.2518 7 6 2.1137 1.5591 2.5337 8 6 0.8711 3.1955 1.2240 9 8 0.4895 3.6415 0.1627 10 6 0.4728 3.8697 2.5116 11 6 -0.4068 5.0825 2.2015 12 1 -1.2560 4.7695 1.5939 13 6 0.3996 6.1081 1.4474 14 1 1.4511 6.2319 1.6609 15 6 -0.2049 6.8887 0.4849 16 7 -1.5065 6.8242 0.3081 17 14 0.8248 8.0378 -0.5680 18 1 2.2521 7.9246 -0.1737 19 1 0.6750 7.6664 -1.9980 20 1 0.3660 9.4360 -0.3689 21 6 -0.9056 5.6840 3.4901 22 6 -0.0089 6.2203 4.3951 23 6 -0.4668 6.7760 5.5752 24 6 -1.8206 6.7870 5.8543 25 6 -2.7169 6.2459 4.9516 26 6 -2.2594 5.6942 3.7696 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8532 0.9571 -1.0570 33 1 3.9281 2.4721 -0.1252 34 1 3.9995 0.9054 0.7162 35 1 1.3912 0.8314 2.9034 36 1 3.0804 1.0742 2.3973 37 1 2.2128 2.3709 3.2543 38 1 -0.0826 3.1670 3.1329 39 1 1.3670 4.1959 3.0427 40 1 -1.9318 7.3731 -0.3692 41 1 1.0491 6.2087 4.1785 42 1 0.2334 7.1991 6.2802 43 1 -2.1781 7.2187 6.7774 44 1 -3.7745 6.2541 5.1699 45 1 -2.9596 5.2718 3.0642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355460513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:13 Heat of formation + Delta-G solvation = -40.488580 kcal Electronic energy + Delta-G solvation = -23770.614889 eV Core-core repulsion = 20558.847785 eV Total energy + Delta-G solvation = -3211.767104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96250 -39.79768 -37.62283 -35.74382 -34.14446 -33.23681 -31.49652 -31.04906 -30.04529 -27.68740 -27.40258 -24.95218 -24.25529 -23.14305 -22.09314 -21.03266 -19.68405 -18.49038 -18.12741 -17.26930 -16.80846 -16.49405 -16.37741 -15.65598 -15.46201 -15.04000 -14.70336 -14.59144 -14.36344 -14.20519 -13.94383 -13.80708 -13.57519 -13.37256 -13.23064 -13.07141 -13.01143 -12.86716 -12.61771 -12.49376 -12.45295 -12.03688 -11.90537 -11.81931 -11.68111 -11.55694 -11.29992 -10.93355 -10.58097 -10.26962 -9.53602 -9.39886 -9.18091 -8.04786 -6.06647 0.78436 0.84989 1.32613 1.36791 1.44046 2.01893 2.27574 2.45019 3.19079 3.35763 3.76402 4.11420 4.16611 4.20383 4.25800 4.36067 4.39179 4.42012 4.50911 4.55425 4.60742 4.63094 4.73490 4.75420 4.80176 4.89242 4.92173 4.95049 5.01956 5.05244 5.09058 5.22265 5.27691 5.31889 5.37964 5.42412 5.53433 5.63718 5.78354 5.84277 5.90809 5.96866 6.18021 6.42316 6.47237 6.66563 7.01102 7.55624 7.62504 9.05184 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.005941 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.444946 B = 4711.793404 C = 5944.706190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.125 3.875 4 H 0.056 0.944 5 C -0.151 4.151 6 N -0.618 5.618 7 C 0.074 3.926 8 C 0.509 3.491 9 O -0.560 6.560 10 C -0.110 4.110 11 C 0.083 3.917 12 H 0.020 0.980 13 C -0.481 4.481 14 H 0.045 0.955 15 C 0.022 3.978 16 N -0.917 5.917 17 Si 0.935 3.065 18 H -0.266 1.266 19 H -0.293 1.293 20 H -0.281 1.281 21 C -0.045 4.045 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.144 4.144 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.252 0.748 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.131 0.869 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.446 -12.751 8.888 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.075 0.925 5 C -0.209 4.209 6 N -0.353 5.353 7 C -0.068 4.068 8 C 0.298 3.702 9 O -0.437 6.437 10 C -0.150 4.150 11 C 0.064 3.936 12 H 0.039 0.961 13 C -0.519 4.519 14 H 0.063 0.937 15 C -0.177 4.177 16 N -0.557 5.557 17 Si 0.762 3.238 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.207 1.207 21 C -0.046 4.046 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.165 4.165 25 C -0.146 4.146 26 C -0.162 4.162 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.133 0.867 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.149 0.851 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.119 -12.440 8.214 16.520 hybrid contribution -0.021 1.025 -1.328 1.678 sum 7.098 -11.415 6.886 15.103 Atomic orbital electron populations 1.21685 0.96898 1.01498 1.00370 1.21812 0.95241 0.94654 1.03926 1.21136 0.95946 0.93870 0.86839 0.92547 1.22063 0.93548 1.01623 1.03669 1.48054 1.51154 1.28017 1.08108 1.21938 1.00993 1.00003 0.83889 1.21061 0.77619 0.79778 0.91749 1.90714 1.55117 1.63948 1.33916 1.21652 1.01327 0.97837 0.94205 1.17614 0.94776 0.91503 0.89710 0.96136 1.20975 0.94309 1.18205 1.18374 0.93686 1.25486 0.95485 0.98557 0.98124 1.70066 1.09912 1.41372 1.34346 0.85867 0.79880 0.79032 0.79011 1.19018 1.21999 1.20694 1.20565 0.93332 0.95937 0.94749 1.21022 0.99456 0.99726 0.94323 1.21369 0.96369 0.99529 0.97021 1.21262 0.93260 1.01685 1.00324 1.21277 1.00258 0.98979 0.94054 1.21087 0.95531 1.02336 0.97287 0.90887 0.94651 0.95163 0.89431 0.89543 0.90132 0.94405 0.89996 0.91757 0.88862 0.90737 0.89683 0.88870 0.93865 0.86729 0.84059 0.83810 0.85080 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.80 71.98 0.71 -3.06 16 2 C -0.12 -2.48 5.36 30.60 0.16 -2.32 16 3 C 0.13 3.50 2.64 44.99 0.12 3.62 16 4 H 0.06 2.08 6.90 -2.39 -0.02 2.06 16 5 C -0.15 -3.25 9.17 71.98 0.66 -2.59 16 6 N -0.62 -18.95 2.21 -822.59 -1.82 -20.77 16 7 C 0.07 1.50 9.20 127.77 1.18 2.68 16 8 C 0.51 21.49 7.42 87.66 0.65 22.14 16 9 O -0.56 -30.33 14.31 -3.04 -0.04 -30.37 16 10 C -0.11 -4.43 3.50 29.85 0.10 -4.32 16 11 C 0.08 4.21 1.67 -12.29 -0.02 4.19 16 12 H 0.02 1.23 6.98 -2.38 -0.02 1.21 16 13 C -0.48 -27.15 6.37 25.60 0.16 -26.99 16 14 H 0.04 2.51 7.82 -2.91 -0.02 2.49 16 15 C 0.02 1.31 5.45 84.65 0.46 1.77 16 16 N -0.92 -57.76 12.87 21.45 0.28 -57.48 16 17 Si 0.93 47.99 29.54 68.60 2.03 50.02 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 20 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 21 C -0.05 -2.06 4.77 -19.87 -0.09 -2.16 16 22 C -0.13 -5.02 8.86 22.27 0.20 -4.83 16 23 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 24 C -0.15 -4.62 10.05 22.27 0.22 -4.40 16 25 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 26 C -0.14 -6.32 9.67 22.27 0.22 -6.11 16 27 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.03 1.03 7.75 -2.39 -0.02 1.01 16 29 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.42 7.51 -2.39 -0.02 1.40 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.32 6.66 -2.38 -0.02 1.30 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.37 6.43 -2.39 -0.02 1.35 16 37 H 0.07 1.50 6.44 -2.39 -0.02 1.48 16 38 H 0.08 2.99 8.11 -2.39 -0.02 2.97 16 39 H 0.09 3.36 7.04 -2.39 -0.02 3.35 16 40 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.11 4.37 7.76 -2.91 -0.02 4.34 16 42 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 43 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.13 3.90 8.06 -2.92 -0.02 3.87 16 45 H 0.09 4.27 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -76.01 362.97 6.55 -69.46 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.94 Total: 19.71 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 5.17 Total: -30.56 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.55 Total: -78.25 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.04 Total: -30.37 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -76.01 6.55 -69.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355460513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.972 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds