Wall clock time and date at job start Tue Mar 31 2020 06:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99467 * 2 1 4 4 C 1.38757 * 120.14869 * 0.02562 * 3 2 1 5 5 C 1.37915 * 119.80720 * 179.90760 * 4 3 2 6 6 C 1.38780 * 120.45654 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.81407 * 0.12996 * 6 5 4 8 8 C 1.38527 * 120.14030 * 180.02562 * 3 2 1 9 9 C 1.50725 * 121.65256 * 179.76395 * 7 6 5 10 10 C 1.52893 * 109.97574 * 16.91215 * 9 7 6 11 11 H 1.09000 * 109.63256 * 69.31802 * 10 9 7 12 12 C 1.52989 * 109.63680 * 189.91738 * 10 9 7 13 13 N 1.47164 * 108.49840 * 309.62372 * 10 9 7 14 14 C 1.46901 * 110.99817 * 307.86900 * 13 10 9 15 15 C 1.52997 * 109.47186 * 176.28785 * 14 13 10 16 16 C 1.50697 * 109.47624 * 174.41212 * 15 14 13 17 17 H 1.08006 * 119.99792 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00533 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99836 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47009 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46962 * 119.99718 * 20 18 16 23 23 H 1.48500 * 109.46798 * 239.99807 * 20 18 16 24 24 C 1.46629 * 110.24395 * 71.28653 * 13 10 9 25 25 H 1.08996 * 109.30045 * 187.09240 * 24 13 10 26 26 C 1.52997 * 109.29993 * 67.71735 * 24 13 10 27 27 H 1.09001 * 109.46813 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47029 * 299.99704 * 1 2 3 29 29 H 1.08998 * 109.47108 * 60.00217 * 1 2 3 30 30 H 1.08002 * 120.09395 * 359.92934 * 4 3 2 31 31 H 1.07997 * 119.76949 * 179.97438 * 5 4 3 32 32 H 1.08003 * 119.84629 * 0.02562 * 8 3 2 33 33 H 1.09001 * 109.38621 * 256.75941 * 9 7 6 34 34 H 1.09004 * 109.30884 * 137.01846 * 9 7 6 35 35 H 1.08999 * 109.47713 * 179.01085 * 12 10 9 36 36 H 1.09002 * 109.47210 * 299.00892 * 12 10 9 37 37 H 1.08998 * 109.47488 * 59.00691 * 12 10 9 38 38 H 1.08996 * 109.47422 * 296.28753 * 14 13 10 39 39 H 1.08999 * 109.47017 * 56.29034 * 14 13 10 40 40 H 1.09005 * 109.47014 * 294.40932 * 15 14 13 41 41 H 1.08999 * 109.47302 * 54.40527 * 15 14 13 42 42 H 0.97000 * 120.00082 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47337 * 60.00290 * 26 24 13 44 44 H 1.08997 * 109.46912 * 180.02562 * 26 24 13 45 45 H 1.09000 * 109.47047 * 300.00102 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2931 2.3766 0.0005 5 6 1.9264 3.6017 0.0025 6 6 3.3122 3.6772 0.0044 7 6 4.0618 2.5200 0.0017 8 6 3.4291 1.2870 -0.0005 9 6 5.5687 2.5538 -0.0016 10 6 6.0610 3.9395 0.4165 11 1 5.8440 4.1021 1.4723 12 6 7.5682 4.0441 0.1753 13 7 5.3595 4.9483 -0.3934 14 6 5.4719 4.6441 -1.8261 15 6 4.6554 5.6591 -2.6286 16 6 4.8797 5.4325 -4.1014 17 1 5.5391 4.6436 -4.4321 18 6 4.2440 6.2328 -5.0269 19 7 3.4415 7.1937 -4.6243 20 14 4.5227 5.9522 -6.8526 21 1 5.4631 4.8184 -7.0412 22 1 3.2282 5.6366 -7.5081 23 1 5.0990 7.1789 -7.4595 24 6 3.9544 5.0399 0.0158 25 1 3.4208 5.6953 -0.6724 26 6 3.8759 5.6245 1.4275 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2143 2.3245 -0.0002 31 1 1.3399 4.5085 0.0025 32 1 4.0172 0.3811 -0.0014 33 1 5.9334 2.3273 -1.0035 34 1 5.9474 1.8088 0.6982 35 1 7.9133 5.0387 0.4578 36 1 8.0851 3.2959 0.7763 37 1 7.7801 3.8721 -0.8799 38 1 6.5177 4.6990 -2.1283 39 1 5.0911 3.6405 -2.0154 40 1 3.5968 5.5365 -2.3993 41 1 4.9698 6.6687 -2.3643 42 1 2.9945 7.7570 -5.2753 43 1 4.3234 6.6183 1.4346 44 1 2.8324 5.6933 1.7346 45 1 4.4159 4.9778 2.1191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359539337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:04 Heat of formation + Delta-G solvation = -15.265023 kcal Electronic energy + Delta-G solvation = -23961.738545 eV Core-core repulsion = 20751.065217 eV Total energy + Delta-G solvation = -3210.673329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67318 -39.14850 -36.40806 -33.72147 -33.10814 -31.21725 -30.78730 -29.43586 -27.74675 -27.13800 -26.10987 -24.31287 -22.84968 -21.77524 -21.32046 -20.96214 -18.05769 -17.49785 -16.41524 -16.25772 -15.73974 -15.61798 -14.87756 -14.62881 -14.41112 -14.34088 -14.02815 -13.68807 -13.09256 -12.94737 -12.67040 -12.50826 -12.23318 -12.18349 -11.98053 -11.87167 -11.56607 -11.30433 -11.27103 -11.17487 -10.92479 -10.84657 -10.56398 -10.52087 -10.35231 -10.14410 -9.74542 -9.27781 -9.02326 -8.57160 -8.31070 -7.83878 -7.66495 -5.97344 -3.98509 1.51729 1.63921 3.29779 3.32620 3.40042 3.44265 3.91132 4.39179 4.54927 4.83170 4.92237 5.06308 5.07305 5.09287 5.19400 5.29490 5.36148 5.36764 5.39331 5.52227 5.66701 5.71245 5.76614 5.83720 5.87280 5.96547 6.03006 6.06505 6.17945 6.27165 6.37852 6.40552 6.47176 6.49049 6.52840 6.60450 6.64883 6.87294 6.97782 7.05653 7.49945 7.57232 7.65528 7.83355 7.92889 8.10167 8.47546 9.08166 9.64848 11.14228 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.005505 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.928836 B = 5085.350461 C = 6218.954889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.117 3.883 4 C -0.209 4.209 5 C -0.070 4.070 6 C -0.123 4.123 7 C -0.034 4.034 8 C -0.154 4.154 9 C -0.114 4.114 10 C 0.074 3.926 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.517 5.517 14 C 0.055 3.945 15 C 0.026 3.974 16 C -0.516 4.516 17 H 0.053 0.947 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.112 3.888 25 H 0.108 0.892 26 C -0.135 4.135 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.027 0.973 40 H 0.016 0.984 41 H 0.024 0.976 42 H 0.259 0.741 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.090 -10.285 13.545 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.073 3.927 4 C -0.228 4.228 5 C -0.088 4.088 6 C -0.125 4.125 7 C -0.035 4.035 8 C -0.173 4.173 9 C -0.152 4.152 10 C -0.035 4.035 11 H 0.099 0.901 12 C -0.198 4.198 13 N -0.238 5.238 14 C -0.072 4.072 15 C -0.012 4.012 16 C -0.555 4.555 17 H 0.072 0.928 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C 0.003 3.997 25 H 0.126 0.874 26 C -0.192 4.192 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.868 -9.856 13.557 16.864 hybrid contribution -0.771 -0.895 -1.358 1.800 sum -2.639 -10.751 12.198 16.473 Atomic orbital electron populations 1.22995 0.78791 1.03485 1.01336 1.86028 1.21079 1.27280 1.89196 1.18848 0.92224 0.83912 0.97725 1.21103 0.99630 0.92426 1.09612 1.20891 0.94017 0.97020 0.96887 1.20344 0.93668 0.96432 1.02039 1.19325 0.95452 0.91534 0.97147 1.20236 0.91244 0.97869 1.07918 1.21200 0.91101 0.99909 1.02984 1.21770 0.94642 0.88760 0.98309 0.90117 1.21774 0.94160 1.01812 1.02018 1.62800 1.10522 1.45037 1.05488 1.22417 1.01035 0.99006 0.84713 1.19154 0.94474 0.94158 0.93378 1.21210 1.27016 1.15910 0.91386 0.92842 1.24965 0.95253 0.95199 0.98810 1.69970 1.29956 1.19619 1.33813 0.86581 0.77927 0.78067 0.85710 1.19780 1.21118 1.20995 1.20738 0.89328 0.91882 0.97705 0.87383 1.21839 1.00978 1.01175 0.95251 0.88593 0.92879 0.92668 0.85853 0.85777 0.85794 0.89705 0.90798 0.91796 0.92935 0.92240 0.91759 0.95475 0.96539 0.95751 0.93140 0.91581 0.92762 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.82 101.05 0.99 1.27 16 2 O -0.32 -4.45 10.50 -19.44 -0.20 -4.65 16 3 C 0.12 1.79 6.68 -39.28 -0.26 1.53 16 4 C -0.21 -3.05 9.04 -39.51 -0.36 -3.41 16 5 C -0.07 -1.10 9.51 -39.50 -0.38 -1.47 16 6 C -0.12 -2.07 4.64 -104.58 -0.48 -2.55 16 7 C -0.03 -0.55 5.08 -104.61 -0.53 -1.08 16 8 C -0.15 -2.39 9.59 -39.34 -0.38 -2.77 16 9 C -0.11 -1.65 4.46 -27.93 -0.12 -1.77 16 10 C 0.07 1.09 2.69 -67.63 -0.18 0.91 16 11 H 0.08 1.12 6.05 -51.93 -0.31 0.80 16 12 C -0.14 -1.84 9.15 37.15 0.34 -1.50 16 13 N -0.52 -9.25 4.59 -220.22 -1.01 -10.26 16 14 C 0.05 1.16 4.04 -3.82 -0.02 1.14 16 15 C 0.03 0.66 4.34 -27.89 -0.12 0.54 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.11 1.94 2.16 -69.04 -0.15 1.79 16 25 H 0.11 2.17 5.71 -51.93 -0.30 1.87 16 26 C -0.13 -1.91 9.09 37.16 0.34 -1.57 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 29 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 30 H 0.12 1.48 6.32 -52.49 -0.33 1.15 16 31 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.08 1.32 6.74 -51.93 -0.35 0.97 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.84 6.70 -51.93 -0.35 0.49 16 38 H 0.06 1.36 6.71 -51.93 -0.35 1.01 16 39 H 0.03 0.59 5.42 -51.93 -0.28 0.31 16 40 H 0.02 0.45 6.44 -51.93 -0.33 0.12 16 41 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 45 H 0.05 0.67 6.33 -51.93 -0.33 0.34 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -31.22 344.92 -9.10 -40.31 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.07 Total: 1.06 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.72 Total: -22.39 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.27 Total: -36.42 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.20 Total: -4.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.22 -9.10 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359539337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.050 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds