Wall clock time and date at job start Tue Mar 31 2020 06:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99467 * 2 1 4 4 C 1.38757 * 120.14869 * 0.02562 * 3 2 1 5 5 C 1.37915 * 119.80720 * 179.90760 * 4 3 2 6 6 C 1.38780 * 120.45654 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.81407 * 0.12996 * 6 5 4 8 8 C 1.38527 * 120.14030 * 180.02562 * 3 2 1 9 9 C 1.50725 * 121.65256 * 179.76395 * 7 6 5 10 10 C 1.52893 * 109.97574 * 16.91215 * 9 7 6 11 11 H 1.09000 * 109.63256 * 69.31802 * 10 9 7 12 12 C 1.52989 * 109.63680 * 189.91738 * 10 9 7 13 13 N 1.47164 * 108.49840 * 309.62372 * 10 9 7 14 14 C 1.46901 * 110.99817 * 307.86900 * 13 10 9 15 15 C 1.52997 * 109.47186 * 176.28785 * 14 13 10 16 16 C 1.50697 * 109.47624 * 174.41212 * 15 14 13 17 17 H 1.08006 * 119.99792 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00533 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99836 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47009 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46962 * 119.99718 * 20 18 16 23 23 H 1.48500 * 109.46798 * 239.99807 * 20 18 16 24 24 C 1.46629 * 110.24395 * 71.28653 * 13 10 9 25 25 H 1.08996 * 109.30045 * 187.09240 * 24 13 10 26 26 C 1.52997 * 109.29993 * 67.71735 * 24 13 10 27 27 H 1.09001 * 109.46813 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47029 * 299.99704 * 1 2 3 29 29 H 1.08998 * 109.47108 * 60.00217 * 1 2 3 30 30 H 1.08002 * 120.09395 * 359.92934 * 4 3 2 31 31 H 1.07997 * 119.76949 * 179.97438 * 5 4 3 32 32 H 1.08003 * 119.84629 * 0.02562 * 8 3 2 33 33 H 1.09001 * 109.38621 * 256.75941 * 9 7 6 34 34 H 1.09004 * 109.30884 * 137.01846 * 9 7 6 35 35 H 1.08999 * 109.47713 * 179.01085 * 12 10 9 36 36 H 1.09002 * 109.47210 * 299.00892 * 12 10 9 37 37 H 1.08998 * 109.47488 * 59.00691 * 12 10 9 38 38 H 1.08996 * 109.47422 * 296.28753 * 14 13 10 39 39 H 1.08999 * 109.47017 * 56.29034 * 14 13 10 40 40 H 1.09005 * 109.47014 * 294.40932 * 15 14 13 41 41 H 1.08999 * 109.47302 * 54.40527 * 15 14 13 42 42 H 0.97000 * 120.00082 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47337 * 60.00290 * 26 24 13 44 44 H 1.08997 * 109.46912 * 180.02562 * 26 24 13 45 45 H 1.09000 * 109.47047 * 300.00102 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2931 2.3766 0.0005 5 6 1.9264 3.6017 0.0025 6 6 3.3122 3.6772 0.0044 7 6 4.0618 2.5200 0.0017 8 6 3.4291 1.2870 -0.0005 9 6 5.5687 2.5538 -0.0016 10 6 6.0610 3.9395 0.4165 11 1 5.8440 4.1021 1.4723 12 6 7.5682 4.0441 0.1753 13 7 5.3595 4.9483 -0.3934 14 6 5.4719 4.6441 -1.8261 15 6 4.6554 5.6591 -2.6286 16 6 4.8797 5.4325 -4.1014 17 1 5.5391 4.6436 -4.4321 18 6 4.2440 6.2328 -5.0269 19 7 3.4415 7.1937 -4.6243 20 14 4.5227 5.9522 -6.8526 21 1 5.4631 4.8184 -7.0412 22 1 3.2282 5.6366 -7.5081 23 1 5.0990 7.1789 -7.4595 24 6 3.9544 5.0399 0.0158 25 1 3.4208 5.6953 -0.6724 26 6 3.8759 5.6245 1.4275 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2143 2.3245 -0.0002 31 1 1.3399 4.5085 0.0025 32 1 4.0172 0.3811 -0.0014 33 1 5.9334 2.3273 -1.0035 34 1 5.9474 1.8088 0.6982 35 1 7.9133 5.0387 0.4578 36 1 8.0851 3.2959 0.7763 37 1 7.7801 3.8721 -0.8799 38 1 6.5177 4.6990 -2.1283 39 1 5.0911 3.6405 -2.0154 40 1 3.5968 5.5365 -2.3993 41 1 4.9698 6.6687 -2.3643 42 1 2.9945 7.7570 -5.2753 43 1 4.3234 6.6183 1.4346 44 1 2.8324 5.6933 1.7346 45 1 4.4159 4.9778 2.1191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359539337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:03 Heat of formation + Delta-G solvation = -33.752347 kcal Electronic energy + Delta-G solvation = -23962.540216 eV Core-core repulsion = 20751.065217 eV Total energy + Delta-G solvation = -3211.474999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.90194 -40.28051 -37.62071 -35.46852 -34.66829 -32.83107 -32.10819 -30.63278 -29.32575 -28.10040 -27.18793 -26.21321 -24.15082 -23.09280 -22.72469 -22.40816 -19.32114 -18.75210 -18.42559 -17.40458 -17.05295 -16.67147 -16.33179 -16.13054 -15.97541 -15.80108 -15.26791 -14.90990 -14.33529 -14.19096 -14.13375 -13.83890 -13.73377 -13.40019 -13.19929 -13.13775 -12.95196 -12.80937 -12.61072 -12.53882 -12.40860 -12.34509 -12.17267 -11.69945 -11.66526 -11.57723 -11.46010 -11.16000 -11.04909 -10.52340 -9.75060 -9.12235 -8.99899 -8.19640 -6.29666 0.33437 0.43531 1.38175 1.38448 1.51588 2.34085 2.39820 2.71679 3.10293 3.13888 3.71053 3.79386 3.90017 4.01183 4.12747 4.18361 4.27053 4.36746 4.39798 4.43471 4.50462 4.55513 4.61923 4.69932 4.71692 4.74915 4.83586 4.86497 4.90958 4.98516 5.04035 5.10754 5.14414 5.24367 5.27885 5.32874 5.38828 5.46106 5.48539 5.65602 5.72139 5.81481 5.83371 6.17800 6.38053 6.40193 6.43737 6.86808 7.38797 8.92604 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.005505 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.928836 B = 5085.350461 C = 6218.954889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.114 3.886 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.144 4.144 7 C -0.046 4.046 8 C -0.165 4.165 9 C -0.110 4.110 10 C 0.074 3.926 11 H 0.096 0.904 12 C -0.136 4.136 13 N -0.524 5.524 14 C 0.077 3.923 15 C 0.038 3.962 16 C -0.540 4.540 17 H 0.055 0.945 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.961 3.039 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.276 1.276 24 C 0.114 3.886 25 H 0.068 0.932 26 C -0.125 4.125 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.021 0.979 40 H -0.008 1.008 41 H -0.007 1.007 42 H 0.263 0.737 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 -12.067 14.075 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.228 4.228 5 C -0.102 4.102 6 C -0.145 4.145 7 C -0.046 4.046 8 C -0.183 4.183 9 C -0.148 4.148 10 C -0.034 4.034 11 H 0.114 0.886 12 C -0.193 4.193 13 N -0.246 5.246 14 C -0.050 4.050 15 C 0.001 3.999 16 C -0.578 4.578 17 H 0.074 0.926 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.785 3.215 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.201 1.201 24 C 0.004 3.996 25 H 0.086 0.914 26 C -0.183 4.183 27 H 0.140 0.860 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.641 -11.649 14.103 18.366 hybrid contribution -0.935 -0.371 -1.481 1.790 sum -2.577 -12.020 12.622 17.620 Atomic orbital electron populations 1.23323 0.76595 1.05567 1.02047 1.86019 1.23366 1.26514 1.88893 1.19014 0.92458 0.84618 0.97043 1.21347 1.00930 0.91773 1.08792 1.21075 0.93977 0.97923 0.97269 1.20381 0.94320 0.96283 1.03565 1.19532 0.96335 0.91519 0.97200 1.20460 0.91845 0.98122 1.07901 1.21195 0.90176 1.00368 1.03026 1.21924 0.95194 0.88011 0.98314 0.88589 1.21760 0.93146 1.02731 1.01696 1.62753 1.11420 1.46643 1.03825 1.21976 0.99641 0.96814 0.86576 1.18938 0.93760 0.93798 0.93428 1.21621 1.27221 1.16134 0.92864 0.92648 1.25883 0.94774 0.94759 1.03923 1.70101 1.30776 1.20491 1.35630 0.85466 0.78136 0.78415 0.79458 1.18747 1.20478 1.20140 1.20621 0.88575 0.91961 0.98396 0.91414 1.21763 1.02094 1.00957 0.93460 0.85964 0.91549 0.92511 0.83478 0.85352 0.84432 0.90944 0.87882 0.92048 0.89855 0.93653 0.91852 0.96118 0.98946 0.98904 0.92834 0.91901 0.91488 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.82 113.37 1.11 1.43 16 2 O -0.33 -8.60 10.50 -92.46 -0.97 -9.57 16 3 C 0.11 3.32 6.68 22.46 0.15 3.47 16 4 C -0.21 -5.94 9.04 22.32 0.20 -5.73 16 5 C -0.08 -2.66 9.51 22.32 0.21 -2.45 16 6 C -0.14 -4.87 4.64 -19.84 -0.09 -4.96 16 7 C -0.05 -1.44 5.08 -19.86 -0.10 -1.54 16 8 C -0.16 -4.92 9.59 22.42 0.22 -4.71 16 9 C -0.11 -3.02 4.46 29.82 0.13 -2.88 16 10 C 0.07 2.07 2.69 44.83 0.12 2.19 16 11 H 0.10 2.44 6.05 -2.39 -0.01 2.43 16 12 C -0.14 -3.34 9.15 71.98 0.66 -2.68 16 13 N -0.52 -19.07 4.59 -850.64 -3.90 -22.97 16 14 C 0.08 3.38 4.04 86.30 0.35 3.73 16 15 C 0.04 2.08 4.34 29.85 0.13 2.21 16 16 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 18 C 0.00 0.27 5.46 84.66 0.46 0.73 16 19 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 20 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C 0.11 4.04 2.16 44.20 0.10 4.13 16 25 H 0.07 2.93 5.71 -2.39 -0.01 2.92 16 26 C -0.13 -3.52 9.09 71.98 0.65 -2.86 16 27 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 29 H 0.06 0.94 7.67 -2.39 -0.02 0.92 16 30 H 0.15 3.30 6.32 -2.91 -0.02 3.28 16 31 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.07 2.19 6.74 -2.39 -0.02 2.17 16 34 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.24 6.70 -2.39 -0.02 1.22 16 38 H 0.06 2.74 6.71 -2.39 -0.02 2.73 16 39 H 0.02 0.93 5.42 -2.39 -0.01 0.91 16 40 H -0.01 -0.45 6.44 -2.38 -0.02 -0.47 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.68 8.07 -2.39 -0.02 1.66 16 45 H 0.06 1.63 6.33 -2.39 -0.02 1.61 16 Total: -1.00 -68.78 344.92 2.94 -65.83 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.97 Total: 17.92 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 4.53 Total: -41.33 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -3.62 Total: -80.11 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.97 Total: -9.57 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -68.78 2.94 -65.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359539337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.082 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds