Wall clock time and date at job start Tue Mar 31 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35893 * 117.00184 * 2 1 4 4 C 1.38761 * 120.14647 * 0.02562 * 3 2 1 5 5 C 1.37915 * 119.80919 * 179.87964 * 4 3 2 6 6 C 1.38782 * 120.46469 * 0.02618 * 5 4 3 7 7 C 1.37877 * 119.80183 * 0.14520 * 6 5 4 8 8 C 1.38529 * 120.14838 * 179.97438 * 3 2 1 9 9 C 1.50731 * 121.66144 * 179.51935 * 7 6 5 10 10 C 1.52897 * 109.94640 * 17.00768 * 9 7 6 11 11 H 1.09001 * 109.63284 * 69.44747 * 10 9 7 12 12 C 1.53004 * 109.63229 * 189.84026 * 10 9 7 13 13 N 1.47161 * 108.49172 * 309.54229 * 10 9 7 14 14 C 1.46899 * 111.00161 * 307.84431 * 13 10 9 15 15 C 1.53005 * 109.46867 * 210.18533 * 14 13 10 16 16 C 1.50706 * 109.46792 * 174.10609 * 15 14 13 17 17 H 1.08003 * 120.00085 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99782 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99857 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99616 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47102 * 60.00127 * 20 18 16 22 22 H 1.48502 * 109.46723 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47001 * 299.99933 * 20 18 16 24 24 C 1.46616 * 110.26339 * 71.27861 * 13 10 9 25 25 H 1.09003 * 109.27230 * 67.75729 * 24 13 10 26 26 C 1.52998 * 109.24197 * 187.24173 * 24 13 10 27 27 H 1.08992 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47026 * 300.00475 * 1 2 3 29 29 H 1.09003 * 109.47120 * 59.99694 * 1 2 3 30 30 H 1.07998 * 120.09779 * 359.90346 * 4 3 2 31 31 H 1.08006 * 119.76693 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.84542 * 0.02562 * 8 3 2 33 33 H 1.08993 * 109.39606 * 137.15509 * 9 7 6 34 34 H 1.08998 * 109.38991 * 256.96480 * 9 7 6 35 35 H 1.08997 * 109.46673 * 60.00258 * 12 10 9 36 36 H 1.08999 * 109.47054 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.46992 * 300.00457 * 12 10 9 38 38 H 1.08994 * 109.47670 * 330.18815 * 14 13 10 39 39 H 1.09006 * 109.46832 * 90.19401 * 14 13 10 40 40 H 1.08997 * 109.47339 * 294.10813 * 15 14 13 41 41 H 1.09000 * 109.46966 * 54.11161 * 15 14 13 42 42 H 0.96998 * 119.99333 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.47692 * 188.21484 * 26 24 13 44 44 H 1.08999 * 109.47370 * 308.21500 * 26 24 13 45 45 H 1.08997 * 109.47328 * 68.21376 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2933 2.3765 0.0005 5 6 1.9267 3.6016 0.0030 6 6 3.3124 3.6773 0.0045 7 6 4.0619 2.5200 0.0004 8 6 3.4292 1.2868 0.0005 9 6 5.5688 2.5533 -0.0090 10 6 6.0625 3.9391 0.4077 11 1 5.8516 4.1004 1.4648 12 6 7.5691 4.0433 0.1624 13 7 5.3590 4.9477 -0.4006 14 6 5.4681 4.6436 -1.8336 15 6 5.4397 5.9466 -2.6351 16 6 5.6963 5.6473 -4.0897 17 1 5.8626 4.6295 -4.4104 18 6 5.7189 6.6728 -5.0110 19 7 5.5159 7.9121 -4.6204 20 14 6.0363 6.3017 -6.8140 21 1 4.9849 5.3850 -7.3232 22 1 6.0088 7.5664 -7.5919 23 1 7.3668 5.6587 -6.9602 24 6 3.9550 5.0397 0.0116 25 1 3.9019 5.4572 1.0172 26 6 3.2044 5.9569 -0.9559 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2145 2.3246 -0.0006 31 1 1.3401 4.5085 0.0039 32 1 4.0173 0.3810 0.0005 33 1 5.9517 1.8080 0.6881 34 1 5.9295 2.3290 -1.0128 35 1 7.7763 3.8886 -0.8965 36 1 7.9183 5.0318 0.4607 37 1 8.0860 3.2835 0.7486 38 1 6.4051 4.1204 -2.0238 39 1 4.6319 4.0129 -2.1359 40 1 4.4627 6.4179 -2.5280 41 1 6.2109 6.6200 -2.2612 42 1 5.5321 8.6336 -5.2686 43 1 2.2010 6.1452 -0.5738 44 1 3.7401 6.9014 -1.0508 45 1 3.1372 5.4777 -1.9326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359539338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:06 Heat of formation + Delta-G solvation = -7.954775 kcal Electronic energy + Delta-G solvation = -23897.742211 eV Core-core repulsion = 20687.385878 eV Total energy + Delta-G solvation = -3210.356333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73935 -39.21123 -36.50241 -34.18439 -32.98428 -31.14261 -30.73340 -29.08002 -28.06668 -27.05929 -26.10028 -24.81129 -22.71313 -21.52335 -21.11343 -20.77597 -18.45422 -17.65075 -16.47599 -16.22744 -15.83052 -15.70527 -15.47425 -14.57154 -14.39287 -14.10496 -13.91137 -13.75504 -13.06385 -12.95952 -12.58624 -12.49763 -12.18814 -12.15508 -11.95629 -11.91579 -11.42742 -11.29207 -11.17877 -10.98406 -10.88194 -10.83280 -10.58448 -10.51069 -10.45245 -10.26238 -9.54679 -9.33198 -8.88418 -8.66220 -8.20005 -7.93453 -7.67173 -5.92471 -3.93169 1.41354 1.52787 3.20964 3.36727 3.41091 3.43651 3.80601 4.38014 4.56873 4.75170 4.83553 4.97954 4.99835 5.03882 5.13432 5.21567 5.28854 5.36837 5.43508 5.47631 5.58421 5.67907 5.82127 5.84000 5.87534 5.98577 6.01714 6.10577 6.18405 6.30218 6.35048 6.38765 6.41361 6.50654 6.60816 6.64110 6.83221 6.87793 6.94786 7.17087 7.40537 7.61749 7.65414 7.87180 8.06416 8.20422 8.53548 9.14220 9.69159 11.18648 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.004654 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.628751 B = 6014.627862 C = 6688.843573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.118 3.882 4 C -0.211 4.211 5 C -0.072 4.072 6 C -0.131 4.131 7 C -0.033 4.033 8 C -0.154 4.154 9 C -0.114 4.114 10 C 0.079 3.921 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.517 5.517 14 C 0.058 3.942 15 C 0.016 3.984 16 C -0.519 4.519 17 H 0.049 0.951 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.887 3.113 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.126 3.874 25 H 0.082 0.918 26 C -0.147 4.147 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.038 0.962 41 H 0.021 0.979 42 H 0.259 0.741 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 -11.829 12.835 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.074 3.926 4 C -0.230 4.230 5 C -0.091 4.091 6 C -0.133 4.133 7 C -0.033 4.033 8 C -0.173 4.173 9 C -0.152 4.152 10 C -0.030 4.030 11 H 0.094 0.906 12 C -0.199 4.199 13 N -0.239 5.239 14 C -0.069 4.069 15 C -0.021 4.021 16 C -0.558 4.558 17 H 0.067 0.933 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.017 3.983 25 H 0.100 0.900 26 C -0.204 4.204 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.837 -11.353 12.840 18.452 hybrid contribution -0.620 -0.982 -1.285 1.732 sum -7.457 -12.335 11.555 18.473 Atomic orbital electron populations 1.23001 0.78737 1.03563 1.01305 1.86035 1.21112 1.27245 1.89123 1.18874 0.92243 0.83958 0.97550 1.21128 0.99648 0.92452 1.09772 1.20963 0.94038 0.97033 0.97035 1.20470 0.93738 0.96575 1.02533 1.19387 0.95592 0.91506 0.96839 1.20269 0.91253 0.97945 1.07806 1.21251 0.90917 1.00008 1.03066 1.21713 0.94885 0.88596 0.97807 0.90571 1.21817 0.93875 1.01898 1.02342 1.62872 1.10056 1.45188 1.05751 1.22435 0.99185 1.00611 0.84625 1.19503 0.98892 0.91330 0.92408 1.21211 1.48431 0.93090 0.93073 0.93258 1.24939 0.95587 0.95112 0.98494 1.69955 1.50195 0.98989 1.34168 0.86745 0.78762 0.77428 0.85560 1.20429 1.21338 1.20344 1.20556 0.87935 0.90332 0.99456 0.89969 1.22271 0.98088 1.00617 0.99377 0.88530 0.92844 0.92709 0.85836 0.85545 0.85687 0.90666 0.89743 0.91849 0.91664 0.92932 0.92416 0.95373 0.94401 0.96068 0.93103 0.93581 0.90104 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.82 101.05 0.99 1.24 16 2 O -0.32 -4.13 10.50 -19.40 -0.20 -4.34 16 3 C 0.12 1.67 6.68 -39.28 -0.26 1.41 16 4 C -0.21 -2.80 9.04 -39.51 -0.36 -3.15 16 5 C -0.07 -1.02 9.07 -39.50 -0.36 -1.38 16 6 C -0.13 -2.05 4.66 -104.58 -0.49 -2.53 16 7 C -0.03 -0.50 5.25 -104.61 -0.55 -1.05 16 8 C -0.15 -2.25 9.59 -39.34 -0.38 -2.63 16 9 C -0.11 -1.61 4.56 -27.92 -0.13 -1.74 16 10 C 0.08 1.17 2.78 -67.62 -0.19 0.98 16 11 H 0.08 1.05 8.05 -51.93 -0.42 0.64 16 12 C -0.14 -1.98 9.21 37.16 0.34 -1.64 16 13 N -0.52 -9.20 4.55 -220.21 -1.00 -10.21 16 14 C 0.06 1.21 3.00 -3.82 -0.01 1.20 16 15 C 0.02 0.41 4.53 -27.88 -0.13 0.28 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C 0.13 2.06 2.82 -69.05 -0.19 1.87 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 C -0.15 -2.55 6.74 37.16 0.25 -2.30 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 29 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.12 1.32 6.32 -52.49 -0.33 0.98 16 31 H 0.13 1.58 6.57 -52.48 -0.34 1.23 16 32 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.28 6.96 -51.93 -0.36 0.92 16 35 H 0.06 0.98 6.33 -51.93 -0.33 0.65 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 1.21 5.36 -51.93 -0.28 0.93 16 39 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 40 H 0.04 0.99 4.24 -51.93 -0.22 0.77 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.05 0.66 6.82 -51.93 -0.35 0.31 16 44 H 0.08 1.57 6.85 -51.93 -0.36 1.21 16 45 H 0.07 1.45 5.95 -51.93 -0.31 1.14 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -30.94 339.41 -9.16 -40.10 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.92 Total: 1.38 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.87 Total: -22.82 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.27 Total: -36.25 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.20 Total: -4.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.94 -9.16 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359539338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.143 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds