Wall clock time and date at job start Tue Mar 31 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35893 * 117.00184 * 2 1 4 4 C 1.38761 * 120.14647 * 0.02562 * 3 2 1 5 5 C 1.37915 * 119.80919 * 179.87964 * 4 3 2 6 6 C 1.38782 * 120.46469 * 0.02618 * 5 4 3 7 7 C 1.37877 * 119.80183 * 0.14520 * 6 5 4 8 8 C 1.38529 * 120.14838 * 179.97438 * 3 2 1 9 9 C 1.50731 * 121.66144 * 179.51935 * 7 6 5 10 10 C 1.52897 * 109.94640 * 17.00768 * 9 7 6 11 11 H 1.09001 * 109.63284 * 69.44747 * 10 9 7 12 12 C 1.53004 * 109.63229 * 189.84026 * 10 9 7 13 13 N 1.47161 * 108.49172 * 309.54229 * 10 9 7 14 14 C 1.46899 * 111.00161 * 307.84431 * 13 10 9 15 15 C 1.53005 * 109.46867 * 210.18533 * 14 13 10 16 16 C 1.50706 * 109.46792 * 174.10609 * 15 14 13 17 17 H 1.08003 * 120.00085 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99782 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99857 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99616 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47102 * 60.00127 * 20 18 16 22 22 H 1.48502 * 109.46723 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47001 * 299.99933 * 20 18 16 24 24 C 1.46616 * 110.26339 * 71.27861 * 13 10 9 25 25 H 1.09003 * 109.27230 * 67.75729 * 24 13 10 26 26 C 1.52998 * 109.24197 * 187.24173 * 24 13 10 27 27 H 1.08992 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47026 * 300.00475 * 1 2 3 29 29 H 1.09003 * 109.47120 * 59.99694 * 1 2 3 30 30 H 1.07998 * 120.09779 * 359.90346 * 4 3 2 31 31 H 1.08006 * 119.76693 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.84542 * 0.02562 * 8 3 2 33 33 H 1.08993 * 109.39606 * 137.15509 * 9 7 6 34 34 H 1.08998 * 109.38991 * 256.96480 * 9 7 6 35 35 H 1.08997 * 109.46673 * 60.00258 * 12 10 9 36 36 H 1.08999 * 109.47054 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.46992 * 300.00457 * 12 10 9 38 38 H 1.08994 * 109.47670 * 330.18815 * 14 13 10 39 39 H 1.09006 * 109.46832 * 90.19401 * 14 13 10 40 40 H 1.08997 * 109.47339 * 294.10813 * 15 14 13 41 41 H 1.09000 * 109.46966 * 54.11161 * 15 14 13 42 42 H 0.96998 * 119.99333 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.47692 * 188.21484 * 26 24 13 44 44 H 1.08999 * 109.47370 * 308.21500 * 26 24 13 45 45 H 1.08997 * 109.47328 * 68.21376 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2933 2.3765 0.0005 5 6 1.9267 3.6016 0.0030 6 6 3.3124 3.6773 0.0045 7 6 4.0619 2.5200 0.0004 8 6 3.4292 1.2868 0.0005 9 6 5.5688 2.5533 -0.0090 10 6 6.0625 3.9391 0.4077 11 1 5.8516 4.1004 1.4648 12 6 7.5691 4.0433 0.1624 13 7 5.3590 4.9477 -0.4006 14 6 5.4681 4.6436 -1.8336 15 6 5.4397 5.9466 -2.6351 16 6 5.6963 5.6473 -4.0897 17 1 5.8626 4.6295 -4.4104 18 6 5.7189 6.6728 -5.0110 19 7 5.5159 7.9121 -4.6204 20 14 6.0363 6.3017 -6.8140 21 1 4.9849 5.3850 -7.3232 22 1 6.0088 7.5664 -7.5919 23 1 7.3668 5.6587 -6.9602 24 6 3.9550 5.0397 0.0116 25 1 3.9019 5.4572 1.0172 26 6 3.2044 5.9569 -0.9559 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2145 2.3246 -0.0006 31 1 1.3401 4.5085 0.0039 32 1 4.0173 0.3810 0.0005 33 1 5.9517 1.8080 0.6881 34 1 5.9295 2.3290 -1.0128 35 1 7.7763 3.8886 -0.8965 36 1 7.9183 5.0318 0.4607 37 1 8.0860 3.2835 0.7486 38 1 6.4051 4.1204 -2.0238 39 1 4.6319 4.0129 -2.1359 40 1 4.4627 6.4179 -2.5280 41 1 6.2109 6.6200 -2.2612 42 1 5.5321 8.6336 -5.2686 43 1 2.2010 6.1452 -0.5738 44 1 3.7401 6.9014 -1.0508 45 1 3.1372 5.4777 -1.9326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359539338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:06 Heat of formation + Delta-G solvation = -26.321099 kcal Electronic energy + Delta-G solvation = -23898.538635 eV Core-core repulsion = 20687.385878 eV Total energy + Delta-G solvation = -3211.152756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.90251 -40.27935 -37.65170 -35.64449 -34.85363 -32.48993 -32.13029 -30.43418 -29.42084 -28.01514 -27.15374 -26.72352 -23.94366 -23.01127 -22.50191 -22.05790 -19.75965 -18.71757 -18.32390 -17.59455 -17.03074 -16.78917 -16.62599 -16.38404 -15.80401 -15.29733 -15.06732 -14.90666 -14.35039 -14.18905 -14.13139 -13.84589 -13.59556 -13.34348 -13.22338 -13.08640 -12.98852 -12.76332 -12.64307 -12.51724 -12.30227 -12.22752 -12.12633 -11.87825 -11.63209 -11.55941 -11.39764 -11.20895 -10.90210 -10.37325 -9.74266 -9.09474 -9.01261 -8.13720 -6.22516 0.34097 0.43133 1.39712 1.42099 1.49858 2.34892 2.42767 2.71796 3.10478 3.19283 3.70065 3.81023 3.91856 3.96701 4.10448 4.19020 4.28680 4.35678 4.38268 4.41337 4.50983 4.58900 4.60731 4.70813 4.72646 4.74500 4.77532 4.81319 4.89634 5.00736 5.05377 5.11084 5.21823 5.25111 5.29107 5.39348 5.44107 5.47475 5.58872 5.66519 5.80389 5.83082 5.95439 6.24708 6.40987 6.44656 6.45522 6.95064 7.44374 8.97525 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.004654 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.628751 B = 6014.627862 C = 6688.843573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.114 3.886 4 C -0.211 4.211 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.045 4.045 8 C -0.167 4.167 9 C -0.108 4.108 10 C 0.078 3.922 11 H 0.093 0.907 12 C -0.138 4.138 13 N -0.531 5.531 14 C 0.085 3.915 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.049 0.951 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.955 3.045 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.269 1.269 24 C 0.129 3.871 25 H 0.099 0.901 26 C -0.137 4.137 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.028 0.972 41 H -0.014 1.014 42 H 0.262 0.738 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 -13.564 13.441 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.069 3.931 4 C -0.229 4.229 5 C -0.096 4.096 6 C -0.152 4.152 7 C -0.046 4.046 8 C -0.185 4.185 9 C -0.147 4.147 10 C -0.030 4.030 11 H 0.111 0.889 12 C -0.195 4.195 13 N -0.253 5.253 14 C -0.042 4.042 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.067 0.933 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.194 1.194 24 C 0.020 3.980 25 H 0.116 0.884 26 C -0.194 4.194 27 H 0.138 0.862 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.004 0.996 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.770 -13.107 13.462 20.332 hybrid contribution -0.416 -0.473 -1.415 1.549 sum -8.185 -13.580 12.047 19.913 Atomic orbital electron populations 1.23328 0.76515 1.05532 1.02161 1.86024 1.23435 1.26663 1.88840 1.19047 0.92382 0.84781 0.96870 1.21403 1.01030 0.91736 1.08731 1.21173 0.93642 0.98151 0.96665 1.20428 0.94569 0.95967 1.04218 1.19526 0.96069 0.91749 0.97231 1.20436 0.91969 0.98024 1.08117 1.21200 0.90569 1.00039 1.02862 1.21836 0.94893 0.88284 0.97999 0.88861 1.21797 0.93704 1.02532 1.01480 1.62763 1.11637 1.46795 1.04107 1.21909 0.98455 0.97453 0.86411 1.19371 0.96890 0.92911 0.92195 1.21626 1.48460 0.93225 0.94662 0.93266 1.25807 0.95195 0.94850 1.03280 1.70088 1.51009 0.99949 1.35792 0.85654 0.79013 0.77526 0.79767 1.19580 1.20696 1.19415 1.20537 0.86919 0.90970 0.99568 0.88351 1.22104 0.99770 0.99116 0.98380 0.86187 0.91522 0.92216 0.83220 0.84144 0.84786 0.88033 0.91237 0.93929 0.92477 0.89750 0.92750 0.96432 0.95437 0.99554 0.92945 0.90481 0.92928 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.82 113.37 1.11 1.38 16 2 O -0.34 -7.91 10.50 -92.34 -0.97 -8.88 16 3 C 0.11 3.02 6.68 22.46 0.15 3.17 16 4 C -0.21 -5.11 9.04 22.32 0.20 -4.91 16 5 C -0.08 -2.08 9.07 22.32 0.20 -1.88 16 6 C -0.15 -4.54 4.66 -19.84 -0.09 -4.64 16 7 C -0.05 -1.34 5.25 -19.85 -0.10 -1.44 16 8 C -0.17 -4.64 9.59 22.43 0.22 -4.43 16 9 C -0.11 -2.94 4.56 29.82 0.14 -2.80 16 10 C 0.08 2.24 2.78 44.83 0.12 2.37 16 11 H 0.09 2.39 8.05 -2.39 -0.02 2.37 16 12 C -0.14 -3.74 9.21 71.98 0.66 -3.08 16 13 N -0.53 -19.16 4.55 -850.63 -3.87 -23.03 16 14 C 0.09 3.69 3.00 86.31 0.26 3.95 16 15 C 0.02 1.27 4.53 29.85 0.14 1.41 16 16 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 17 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 18 C 0.01 0.39 5.46 84.66 0.46 0.85 16 19 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 20 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 C 0.13 4.17 2.82 44.20 0.12 4.30 16 25 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 26 C -0.14 -4.86 6.74 71.98 0.49 -4.37 16 27 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 0.78 7.67 -2.39 -0.02 0.77 16 29 H 0.06 0.80 7.67 -2.39 -0.02 0.78 16 30 H 0.15 2.73 6.32 -2.91 -0.02 2.71 16 31 H 0.14 3.22 6.57 -2.91 -0.02 3.20 16 32 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.09 6.96 -2.39 -0.02 2.08 16 35 H 0.04 1.32 6.33 -2.39 -0.02 1.31 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 2.36 5.36 -2.39 -0.01 2.35 16 39 H 0.02 0.79 6.14 -2.38 -0.01 0.77 16 40 H 0.03 1.53 4.24 -2.39 -0.01 1.52 16 41 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.08 2.18 6.82 -2.38 -0.02 2.16 16 44 H 0.05 2.14 6.85 -2.39 -0.02 2.12 16 45 H 0.04 1.71 5.95 -2.39 -0.01 1.70 16 Total: -1.00 -68.23 339.41 2.76 -65.47 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.98 Total: 17.40 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 4.31 Total: -41.42 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.59 Total: -79.79 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.97 Total: -8.88 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.23 2.76 -65.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359539338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.148 kcal (2) G-P(sol) polarization free energy of solvation -68.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds