Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99725 * 2 1 4 4 C 1.38752 * 120.14588 * 359.97438 * 3 2 1 5 5 C 1.37918 * 119.80782 * 180.08503 * 4 3 2 6 6 C 1.38774 * 120.45622 * 0.02562 * 5 4 3 7 7 C 1.37887 * 119.81678 * 359.87977 * 6 5 4 8 8 C 1.38526 * 120.14101 * 180.02562 * 3 2 1 9 9 C 1.50729 * 121.65969 * 180.20732 * 7 6 5 10 10 C 1.52894 * 109.97180 * 343.26831 * 9 7 6 11 11 H 1.08996 * 109.79607 * 290.54708 * 10 9 7 12 12 C 1.52998 * 109.63179 * 170.04879 * 10 9 7 13 13 N 1.47163 * 108.49817 * 50.34484 * 10 9 7 14 14 C 1.46900 * 111.00160 * 165.26755 * 13 10 9 15 15 C 1.53004 * 109.47148 * 187.29841 * 14 13 10 16 16 C 1.50693 * 109.47107 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00195 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99841 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00332 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46867 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47300 * 119.99429 * 20 18 16 23 23 H 1.48497 * 109.47172 * 240.00195 * 20 18 16 24 24 C 1.46631 * 110.22820 * 288.67756 * 13 10 9 25 25 H 1.09001 * 109.30147 * 172.68264 * 24 13 10 26 26 C 1.52998 * 109.29732 * 292.25668 * 24 13 10 27 27 H 1.09006 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47397 * 299.99840 * 1 2 3 29 29 H 1.09003 * 109.47382 * 60.00126 * 1 2 3 30 30 H 1.08001 * 120.09565 * 0.11069 * 4 3 2 31 31 H 1.07998 * 119.77220 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.84825 * 359.96056 * 8 3 2 33 33 H 1.08997 * 109.38841 * 223.10865 * 9 7 6 34 34 H 1.09005 * 109.30355 * 103.36781 * 9 7 6 35 35 H 1.09001 * 109.46843 * 294.06046 * 12 10 9 36 36 H 1.08995 * 109.47449 * 54.06059 * 12 10 9 37 37 H 1.09001 * 109.46970 * 174.06418 * 12 10 9 38 38 H 1.08998 * 109.47260 * 307.30121 * 14 13 10 39 39 H 1.09005 * 109.46730 * 67.30210 * 14 13 10 40 40 H 1.09006 * 109.47058 * 300.00006 * 15 14 13 41 41 H 1.08996 * 109.47094 * 60.00251 * 15 14 13 42 42 H 0.97002 * 120.00316 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47276 * 60.00488 * 26 24 13 44 44 H 1.09000 * 109.47810 * 300.00408 * 26 24 13 45 45 H 1.09002 * 109.47062 * 180.02562 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2931 2.3765 -0.0005 5 6 1.9264 3.6017 -0.0023 6 6 3.3121 3.6772 -0.0041 7 6 4.0618 2.5200 -0.0016 8 6 3.4290 1.2869 -0.0005 9 6 5.5687 2.5536 0.0013 10 6 6.0609 3.9407 -0.4128 11 1 5.8469 4.1084 -1.4683 12 6 7.5681 4.0446 -0.1711 13 7 5.3592 4.9470 0.4000 14 6 6.0223 6.2545 0.3070 15 6 5.3787 7.2245 1.2999 16 6 6.0586 8.5659 1.2040 17 1 6.8690 8.7119 0.5051 18 6 5.6468 9.6067 2.0093 19 7 4.6603 9.4288 2.8606 20 14 6.4890 11.2697 1.8900 21 1 7.5600 11.2096 0.8629 22 1 5.4932 12.3027 1.5074 23 1 7.0841 11.6187 3.2050 24 6 3.9544 5.0398 -0.0099 25 1 3.4193 5.6899 0.6824 26 6 3.8769 5.6295 -1.4195 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2143 2.3245 0.0008 31 1 1.3399 4.5085 -0.0023 32 1 4.0171 0.3811 -0.0003 33 1 5.9486 1.8106 -0.7000 34 1 5.9324 2.3248 1.0031 35 1 7.7688 3.9924 0.8990 36 1 8.0747 3.2224 -0.6763 37 1 7.9344 4.9933 -0.5635 38 1 7.0807 6.1426 0.5423 39 1 5.9144 6.6454 -0.7048 40 1 4.3203 7.3363 1.0645 41 1 5.4866 6.8336 2.3116 42 1 4.3703 10.1610 3.4269 43 1 4.4174 4.9854 -2.1131 44 1 4.3244 6.6234 -1.4228 45 1 2.8335 5.7002 -1.7269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359539340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = -15.034393 kcal Electronic energy + Delta-G solvation = -23488.320759 eV Core-core repulsion = 20277.657431 eV Total energy + Delta-G solvation = -3210.663328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55455 -39.14509 -36.74012 -33.96028 -33.04112 -31.56634 -30.76793 -29.09532 -27.70993 -27.18382 -26.30320 -24.52548 -22.92697 -21.92218 -21.39652 -20.31258 -18.27592 -17.69652 -16.50951 -16.38637 -15.88271 -15.80472 -14.90605 -14.63440 -14.52677 -14.32442 -13.83813 -13.40054 -13.15741 -13.04649 -13.03549 -12.64217 -12.19801 -12.15327 -12.10127 -11.85515 -11.81080 -11.36756 -11.26440 -11.04362 -11.00288 -10.86604 -10.59967 -10.53935 -10.41038 -10.14013 -9.71116 -9.28621 -9.06486 -8.65856 -8.31862 -7.99408 -7.57285 -5.98009 -4.00121 1.42963 1.54517 3.21149 3.31666 3.39324 3.42882 3.82295 4.35497 4.53373 4.77284 4.83459 4.95836 4.98417 5.01227 5.14069 5.25640 5.28699 5.36849 5.39078 5.51127 5.56422 5.62418 5.74241 5.79318 5.83950 5.90687 6.00795 6.05323 6.09239 6.19457 6.31213 6.35478 6.40420 6.43679 6.48999 6.55727 6.72897 6.74972 6.92615 7.03865 7.40107 7.59122 7.62995 7.82608 7.92794 8.11522 8.46003 9.07610 9.63502 11.13274 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023415 B = 0.003763 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.552590 B = 7438.695633 C = 8223.235063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.210 4.210 5 C -0.075 4.075 6 C -0.093 4.093 7 C -0.028 4.028 8 C -0.156 4.156 9 C -0.070 4.070 10 C 0.072 3.928 11 H 0.044 0.956 12 C -0.147 4.147 13 N -0.521 5.521 14 C 0.053 3.947 15 C 0.028 3.972 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.122 3.878 25 H 0.102 0.898 26 C -0.181 4.181 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.016 0.984 41 H 0.023 0.977 42 H 0.259 0.741 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.159 -17.123 -7.932 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.072 3.928 4 C -0.229 4.229 5 C -0.093 4.093 6 C -0.094 4.094 7 C -0.028 4.028 8 C -0.175 4.175 9 C -0.107 4.107 10 C -0.037 4.037 11 H 0.062 0.938 12 C -0.205 4.205 13 N -0.244 5.244 14 C -0.074 4.074 15 C -0.009 4.009 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C 0.013 3.987 25 H 0.120 0.880 26 C -0.240 4.240 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.142 -17.373 -7.298 19.533 hybrid contribution -0.089 1.379 -0.781 1.587 sum -5.232 -15.994 -8.079 18.667 Atomic orbital electron populations 1.22998 0.78770 1.03530 1.01318 1.86032 1.21079 1.27256 1.89181 1.18867 0.92261 0.83909 0.97769 1.21074 0.99641 0.92307 1.09876 1.20874 0.93912 0.97127 0.97432 1.19646 0.93034 0.94746 1.01952 1.19403 0.95761 0.91231 0.96392 1.20272 0.91213 0.97952 1.08046 1.20611 0.90463 0.97058 1.02570 1.21663 0.94254 0.92147 0.95646 0.93820 1.21927 0.94226 1.01560 1.02770 1.62689 1.00827 1.08589 1.52344 1.22533 0.98612 0.86889 0.99332 1.19090 0.95689 0.91868 0.94297 1.21224 1.17793 0.95871 1.20946 0.92812 1.24986 0.95141 0.98810 0.95362 1.69982 1.27545 1.32072 1.23576 0.86575 0.79496 0.84283 0.77862 1.19800 1.21099 1.21030 1.20481 0.90351 0.92214 0.95640 0.88035 1.22449 1.01931 1.02093 0.97492 0.88563 0.92721 0.92845 0.85801 0.85730 0.85637 0.90853 0.89611 0.91484 0.92780 0.92011 0.91257 0.95553 0.96596 0.95814 0.93109 0.93057 0.90731 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.82 101.05 0.99 1.23 16 2 O -0.32 -3.91 10.50 -19.43 -0.20 -4.12 16 3 C 0.12 1.56 6.68 -39.29 -0.26 1.30 16 4 C -0.21 -2.69 9.04 -39.51 -0.36 -3.05 16 5 C -0.07 -1.06 9.51 -39.50 -0.38 -1.43 16 6 C -0.09 -1.46 5.07 -104.58 -0.53 -1.99 16 7 C -0.03 -0.40 5.77 -104.60 -0.60 -1.01 16 8 C -0.16 -2.14 9.59 -39.34 -0.38 -2.52 16 9 C -0.07 -0.93 5.25 -27.92 -0.15 -1.08 16 10 C 0.07 1.06 2.48 -67.62 -0.17 0.90 16 11 H 0.04 0.66 6.05 -51.93 -0.31 0.34 16 12 C -0.15 -1.99 8.15 37.16 0.30 -1.69 16 13 N -0.52 -9.41 4.55 -220.21 -1.00 -10.41 16 14 C 0.05 1.08 3.96 -3.82 -0.02 1.07 16 15 C 0.03 0.72 4.85 -27.88 -0.14 0.58 16 16 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.12 2.11 2.26 -69.04 -0.16 1.95 16 25 H 0.10 1.99 6.59 -51.93 -0.34 1.65 16 26 C -0.18 -2.88 8.40 37.16 0.31 -2.57 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 29 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 30 H 0.12 1.28 6.32 -52.49 -0.33 0.94 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.87 6.67 -51.93 -0.35 0.53 16 38 H 0.07 1.41 5.90 -51.93 -0.31 1.10 16 39 H 0.03 0.54 5.96 -51.93 -0.31 0.23 16 40 H 0.02 0.43 6.59 -51.93 -0.34 0.08 16 41 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.05 0.77 6.33 -51.93 -0.33 0.44 16 44 H 0.07 1.31 6.22 -51.93 -0.32 0.99 16 45 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -30.82 345.61 -9.30 -40.12 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.08 Total: 0.24 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -1.93 Total: -21.59 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.27 Total: -36.41 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.82 -9.30 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359539340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.085 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds