Wall clock time and date at job start Tue Mar 31 2020 06:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99725 * 2 1 4 4 C 1.38752 * 120.14588 * 359.97438 * 3 2 1 5 5 C 1.37918 * 119.80782 * 180.08503 * 4 3 2 6 6 C 1.38774 * 120.45622 * 0.02562 * 5 4 3 7 7 C 1.37887 * 119.81678 * 359.87977 * 6 5 4 8 8 C 1.38526 * 120.14101 * 180.02562 * 3 2 1 9 9 C 1.50729 * 121.65969 * 180.20732 * 7 6 5 10 10 C 1.52894 * 109.97180 * 343.26831 * 9 7 6 11 11 H 1.08996 * 109.79607 * 290.54708 * 10 9 7 12 12 C 1.52998 * 109.63179 * 170.04879 * 10 9 7 13 13 N 1.47163 * 108.49817 * 50.34484 * 10 9 7 14 14 C 1.46900 * 111.00160 * 165.26755 * 13 10 9 15 15 C 1.53004 * 109.47148 * 187.29841 * 14 13 10 16 16 C 1.50693 * 109.47107 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00195 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99841 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00332 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46867 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47300 * 119.99429 * 20 18 16 23 23 H 1.48497 * 109.47172 * 240.00195 * 20 18 16 24 24 C 1.46631 * 110.22820 * 288.67756 * 13 10 9 25 25 H 1.09001 * 109.30147 * 172.68264 * 24 13 10 26 26 C 1.52998 * 109.29732 * 292.25668 * 24 13 10 27 27 H 1.09006 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47397 * 299.99840 * 1 2 3 29 29 H 1.09003 * 109.47382 * 60.00126 * 1 2 3 30 30 H 1.08001 * 120.09565 * 0.11069 * 4 3 2 31 31 H 1.07998 * 119.77220 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.84825 * 359.96056 * 8 3 2 33 33 H 1.08997 * 109.38841 * 223.10865 * 9 7 6 34 34 H 1.09005 * 109.30355 * 103.36781 * 9 7 6 35 35 H 1.09001 * 109.46843 * 294.06046 * 12 10 9 36 36 H 1.08995 * 109.47449 * 54.06059 * 12 10 9 37 37 H 1.09001 * 109.46970 * 174.06418 * 12 10 9 38 38 H 1.08998 * 109.47260 * 307.30121 * 14 13 10 39 39 H 1.09005 * 109.46730 * 67.30210 * 14 13 10 40 40 H 1.09006 * 109.47058 * 300.00006 * 15 14 13 41 41 H 1.08996 * 109.47094 * 60.00251 * 15 14 13 42 42 H 0.97002 * 120.00316 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47276 * 60.00488 * 26 24 13 44 44 H 1.09000 * 109.47810 * 300.00408 * 26 24 13 45 45 H 1.09002 * 109.47062 * 180.02562 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2931 2.3765 -0.0005 5 6 1.9264 3.6017 -0.0023 6 6 3.3121 3.6772 -0.0041 7 6 4.0618 2.5200 -0.0016 8 6 3.4290 1.2869 -0.0005 9 6 5.5687 2.5536 0.0013 10 6 6.0609 3.9407 -0.4128 11 1 5.8469 4.1084 -1.4683 12 6 7.5681 4.0446 -0.1711 13 7 5.3592 4.9470 0.4000 14 6 6.0223 6.2545 0.3070 15 6 5.3787 7.2245 1.2999 16 6 6.0586 8.5659 1.2040 17 1 6.8690 8.7119 0.5051 18 6 5.6468 9.6067 2.0093 19 7 4.6603 9.4288 2.8606 20 14 6.4890 11.2697 1.8900 21 1 7.5600 11.2096 0.8629 22 1 5.4932 12.3027 1.5074 23 1 7.0841 11.6187 3.2050 24 6 3.9544 5.0398 -0.0099 25 1 3.4193 5.6899 0.6824 26 6 3.8769 5.6295 -1.4195 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2143 2.3245 0.0008 31 1 1.3399 4.5085 -0.0023 32 1 4.0171 0.3811 -0.0003 33 1 5.9486 1.8106 -0.7000 34 1 5.9324 2.3248 1.0031 35 1 7.7688 3.9924 0.8990 36 1 8.0747 3.2224 -0.6763 37 1 7.9344 4.9933 -0.5635 38 1 7.0807 6.1426 0.5423 39 1 5.9144 6.6454 -0.7048 40 1 4.3203 7.3363 1.0645 41 1 5.4866 6.8336 2.3116 42 1 4.3703 10.1610 3.4269 43 1 4.4174 4.9854 -2.1131 44 1 4.3244 6.6234 -1.4228 45 1 2.8335 5.7002 -1.7269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359539340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:10 Heat of formation + Delta-G solvation = -33.096834 kcal Electronic energy + Delta-G solvation = -23489.104005 eV Core-core repulsion = 20277.657431 eV Total energy + Delta-G solvation = -3211.446574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67523 -40.22825 -37.89063 -35.51884 -34.72643 -32.99211 -32.01618 -30.50843 -29.08659 -28.09844 -27.39888 -26.27261 -24.38312 -23.06386 -22.63963 -21.82487 -19.55836 -18.75929 -18.42272 -17.56140 -17.15785 -16.62779 -16.52192 -16.12065 -15.76690 -15.61789 -15.11857 -14.60407 -14.45504 -14.27588 -14.20138 -14.14707 -13.63007 -13.49034 -13.23143 -13.06933 -12.94931 -12.82968 -12.80277 -12.55689 -12.38459 -12.20052 -12.17933 -11.71090 -11.61452 -11.54177 -11.44244 -11.11106 -11.08484 -10.51592 -9.70547 -9.17884 -8.88892 -8.17937 -6.28751 0.38051 0.45785 1.40341 1.40821 1.53879 2.38398 2.41154 2.74604 3.06776 3.15538 3.69898 3.78073 3.93019 4.02098 4.15468 4.17858 4.32065 4.35103 4.41275 4.42207 4.45380 4.54710 4.57721 4.60855 4.72544 4.75796 4.77988 4.83954 4.94394 4.98383 5.02881 5.05550 5.12416 5.19248 5.26706 5.33966 5.40224 5.45196 5.53412 5.61821 5.74430 5.84405 5.86120 6.17568 6.37988 6.40357 6.48619 6.89197 7.40192 8.94295 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023415 B = 0.003763 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.552590 B = 7438.695633 C = 8223.235063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.115 3.885 4 C -0.208 4.208 5 C -0.084 4.084 6 C -0.116 4.116 7 C -0.036 4.036 8 C -0.162 4.162 9 C -0.065 4.065 10 C 0.070 3.930 11 H 0.047 0.953 12 C -0.144 4.144 13 N -0.534 5.534 14 C 0.072 3.928 15 C 0.039 3.961 16 C -0.539 4.539 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.125 3.875 25 H 0.063 0.937 26 C -0.171 4.171 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.028 0.972 40 H -0.008 1.008 41 H -0.014 1.014 42 H 0.262 0.738 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -18.542 -9.242 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.227 4.227 5 C -0.103 4.103 6 C -0.117 4.117 7 C -0.037 4.037 8 C -0.181 4.181 9 C -0.102 4.102 10 C -0.038 4.038 11 H 0.065 0.935 12 C -0.201 4.201 13 N -0.259 5.259 14 C -0.055 4.055 15 C 0.001 3.999 16 C -0.577 4.577 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.789 3.211 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.016 3.984 25 H 0.081 0.919 26 C -0.229 4.229 27 H 0.139 0.861 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.010 0.990 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.846 -18.813 -8.620 21.254 hybrid contribution -0.299 1.710 -0.348 1.771 sum -5.145 -17.103 -8.968 19.985 Atomic orbital electron populations 1.23324 0.76624 1.05529 1.02101 1.86027 1.23311 1.26506 1.88835 1.19034 0.92501 0.84578 0.96849 1.21304 1.00961 0.91517 1.08891 1.21010 0.93566 0.98104 0.97604 1.19574 0.93811 0.93980 1.04293 1.19559 0.96441 0.91243 0.96435 1.20460 0.91767 0.98067 1.07759 1.20636 0.89783 0.96538 1.03285 1.21803 0.94842 0.91905 0.95217 0.93503 1.21905 0.93365 1.02423 1.02414 1.62587 1.01441 1.07767 1.54058 1.22144 0.98326 0.87434 0.97627 1.18888 0.94674 0.92695 0.93599 1.21643 1.18037 0.96976 1.21072 0.92180 1.25945 0.95752 1.03145 0.94839 1.70125 1.29101 1.33499 1.24479 0.85416 0.78595 0.78916 0.78209 1.18473 1.20468 1.20489 1.20308 0.89682 0.93122 0.95271 0.91856 1.22333 1.02741 1.00799 0.97069 0.86117 0.92131 0.91804 0.83327 0.85358 0.83959 0.87780 0.89796 0.92539 0.89542 0.92947 0.90877 0.95359 0.98977 0.99532 0.92894 0.91776 0.93029 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.36 16 2 O -0.33 -7.28 10.50 -92.45 -0.97 -8.26 16 3 C 0.12 2.88 6.68 22.46 0.15 3.03 16 4 C -0.21 -5.02 9.04 22.32 0.20 -4.82 16 5 C -0.08 -2.37 9.51 22.32 0.21 -2.16 16 6 C -0.12 -3.65 5.07 -19.84 -0.10 -3.75 16 7 C -0.04 -1.03 5.77 -19.85 -0.11 -1.14 16 8 C -0.16 -4.13 9.59 22.42 0.22 -3.92 16 9 C -0.07 -1.63 5.25 29.82 0.16 -1.48 16 10 C 0.07 2.02 2.48 44.83 0.11 2.13 16 11 H 0.05 1.34 6.05 -2.39 -0.01 1.32 16 12 C -0.14 -3.67 8.15 71.98 0.59 -3.09 16 13 N -0.53 -19.85 4.55 -850.60 -3.87 -23.72 16 14 C 0.07 3.06 3.96 86.30 0.34 3.40 16 15 C 0.04 2.11 4.85 29.85 0.14 2.25 16 16 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.00 0.05 5.46 84.66 0.46 0.52 16 19 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 20 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C 0.12 4.50 2.26 44.20 0.10 4.60 16 25 H 0.06 2.71 6.59 -2.39 -0.02 2.70 16 26 C -0.17 -5.55 8.40 71.98 0.60 -4.95 16 27 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.06 0.74 7.67 -2.39 -0.02 0.72 16 29 H 0.06 0.73 7.67 -2.39 -0.02 0.71 16 30 H 0.15 2.72 6.32 -2.91 -0.02 2.70 16 31 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 34 H 0.08 2.14 8.11 -2.38 -0.02 2.12 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.05 1.42 6.67 -2.39 -0.02 1.41 16 38 H 0.07 3.03 5.90 -2.39 -0.01 3.02 16 39 H 0.03 1.19 5.96 -2.38 -0.01 1.17 16 40 H -0.01 -0.47 6.59 -2.38 -0.02 -0.49 16 41 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.06 1.89 6.33 -2.39 -0.02 1.88 16 44 H 0.05 1.88 6.22 -2.39 -0.01 1.87 16 45 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 Total: -1.00 -68.34 345.61 2.85 -65.49 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.97 Total: 15.85 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 4.42 Total: -38.74 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -3.59 Total: -81.04 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.97 Total: -8.26 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.34 2.85 -65.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359539340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.391 kcal (2) G-P(sol) polarization free energy of solvation -68.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds