Wall clock time and date at job start Tue Mar 31 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47364 * 2 1 4 4 H 1.09000 * 109.46919 * 306.75536 * 3 2 1 5 5 C 1.50699 * 109.47700 * 186.75489 * 3 2 1 6 6 H 1.08003 * 120.00596 * 245.37228 * 5 3 2 7 7 C 1.37877 * 119.99677 * 65.36147 * 5 3 2 8 8 N 1.31516 * 120.00236 * 192.27162 * 7 5 3 9 9 Si 1.86802 * 120.00051 * 12.27906 * 7 5 3 10 10 H 1.48500 * 109.47144 * 95.28414 * 9 7 5 11 11 H 1.48505 * 109.47046 * 215.28785 * 9 7 5 12 12 H 1.48497 * 109.47012 * 335.28466 * 9 7 5 13 13 N 1.46905 * 109.47370 * 66.75338 * 3 2 1 14 14 C 1.47447 * 110.99955 * 285.34517 * 13 3 2 15 15 C 1.54314 * 107.23073 * 236.74017 * 14 13 3 16 16 C 1.55134 * 103.18001 * 337.62825 * 15 14 13 17 17 H 1.09004 * 110.99633 * 277.65513 * 16 15 14 18 18 O 1.42906 * 110.99283 * 153.83429 * 16 15 14 19 19 C 1.42901 * 113.99988 * 91.45544 * 18 16 15 20 20 C 1.50697 * 109.46775 * 180.02562 * 19 18 16 21 21 C 1.38245 * 119.99698 * 269.72511 * 20 19 18 22 22 C 1.38230 * 120.00016 * 179.77081 * 21 20 19 23 23 C 1.38244 * 119.99726 * 0.48243 * 22 21 20 24 24 C 1.38234 * 119.99916 * 359.78773 * 23 22 21 25 25 C 1.38228 * 120.00295 * 89.99942 * 20 19 18 26 26 C 1.47841 * 111.00266 * 164.50220 * 13 3 2 27 27 H 1.08997 * 109.46709 * 52.52466 * 1 2 3 28 28 H 1.08999 * 109.46778 * 172.52968 * 1 2 3 29 29 H 1.08998 * 109.46886 * 292.52992 * 1 2 3 30 30 H 1.09000 * 109.47390 * 239.99560 * 2 1 3 31 31 H 1.09003 * 109.46784 * 119.99690 * 2 1 3 32 32 H 0.96997 * 120.00289 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.88701 * 117.33473 * 14 13 3 34 34 H 1.08992 * 110.02171 * 356.22491 * 14 13 3 35 35 H 1.08996 * 110.70671 * 96.10156 * 15 14 13 36 36 H 1.09007 * 110.70361 * 219.16372 * 15 14 13 37 37 H 1.08994 * 109.46799 * 300.00368 * 19 18 16 38 38 H 1.09001 * 109.47027 * 60.00086 * 19 18 16 39 39 H 1.08005 * 119.99691 * 359.97438 * 21 20 19 40 40 H 1.08001 * 120.00328 * 180.25079 * 22 21 20 41 41 H 1.08002 * 119.99608 * 179.76890 * 23 22 21 42 42 H 1.08001 * 119.99919 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00082 * 359.97438 * 25 20 19 44 44 H 1.08999 * 110.37621 * 265.19737 * 26 13 3 45 45 H 1.09002 * 110.37176 * 27.42021 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5814 1.9899 -0.8234 5 6 3.5378 1.4458 -0.1671 6 1 4.1696 1.8031 0.6326 7 6 4.1014 0.9925 -1.3409 8 7 5.3954 0.7665 -1.4047 9 14 3.0271 0.6994 -2.8407 10 1 3.0560 1.9010 -3.7128 11 1 3.5396 -0.4725 -3.5954 12 1 1.6316 0.4365 -2.4063 13 7 1.6880 2.0864 1.2726 14 6 0.2517 2.4168 1.3179 15 6 0.1396 3.9334 1.5797 16 6 1.5023 4.2810 2.2347 17 1 1.4929 4.0527 3.3005 18 8 1.8441 5.6502 2.0096 19 6 1.3965 6.5374 3.0365 20 6 1.8088 7.9467 2.6975 21 6 3.0262 8.4348 3.1345 22 6 3.4065 9.7259 2.8196 23 6 2.5651 10.5323 2.0761 24 6 1.3454 10.0461 1.6439 25 6 0.9673 8.7533 1.9545 26 6 2.4634 3.3295 1.4697 27 1 -0.3632 0.6252 -0.8156 28 1 -0.3633 -1.0190 -0.1336 29 1 -0.3633 0.3938 0.9492 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.7920 0.4480 -2.2306 33 1 -0.2305 1.8646 2.1246 34 1 -0.2185 2.1689 0.3664 35 1 0.0118 4.4776 0.6440 36 1 -0.6821 4.1468 2.2635 37 1 0.3106 6.4854 3.1136 38 1 1.8426 6.2467 3.9876 39 1 3.6815 7.8061 3.7192 40 1 4.3593 10.1058 3.1575 41 1 2.8606 11.5423 1.8333 42 1 0.6879 10.6763 1.0634 43 1 0.0146 8.3733 1.6165 44 1 3.3540 3.1308 2.0660 45 1 2.7403 3.7607 0.5077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384312203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:22 Heat of formation + Delta-G solvation = -6.600752 kcal Electronic energy + Delta-G solvation = -23039.552677 eV Core-core repulsion = 19829.255059 eV Total energy + Delta-G solvation = -3210.297618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.54324 -38.86449 -36.94652 -33.88507 -32.12326 -31.72270 -31.01473 -29.88100 -27.80285 -26.68228 -25.76635 -22.98144 -22.69400 -21.43572 -20.73114 -20.60858 -19.45190 -17.19272 -16.82250 -16.55822 -15.70737 -15.53300 -15.22110 -14.73673 -14.16656 -14.04738 -13.67940 -13.50410 -13.17819 -13.04833 -12.84141 -12.72183 -12.46525 -12.22289 -12.07994 -11.82139 -11.57829 -11.35023 -11.15954 -10.96001 -10.82241 -10.77250 -10.46206 -10.27058 -9.96711 -9.81790 -9.34506 -9.23371 -9.02752 -8.97020 -8.93415 -8.48459 -7.37243 -6.07716 -4.03498 1.15962 1.29370 3.28410 3.38205 3.41146 3.48098 4.05275 4.42863 4.69919 4.74205 4.87696 4.90028 4.99584 5.06392 5.15994 5.21509 5.27443 5.29697 5.41061 5.43664 5.54425 5.62424 5.84546 5.90982 5.92754 5.97277 6.01743 6.11037 6.18016 6.23144 6.32252 6.37580 6.43326 6.50366 6.57510 6.66990 6.68765 6.75951 6.86646 6.93689 7.00575 7.31698 7.46060 7.63577 7.96234 8.05725 8.63833 9.01084 9.56836 11.04931 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.003715 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.005313 B = 7534.519028 C = 8260.587530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.113 4.113 3 C 0.187 3.813 4 H -0.003 1.003 5 C -0.517 4.517 6 H 0.082 0.918 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.859 3.141 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.513 5.513 14 C 0.036 3.964 15 C -0.166 4.166 16 C 0.072 3.928 17 H 0.071 0.929 18 O -0.367 6.367 19 C 0.102 3.898 20 C -0.085 4.085 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.100 4.100 26 C 0.072 3.928 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 14.456 8.675 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C 0.080 3.920 4 H 0.015 0.985 5 C -0.555 4.555 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.686 3.314 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.239 5.239 14 C -0.092 4.092 15 C -0.204 4.204 16 C 0.013 3.987 17 H 0.089 0.911 18 O -0.285 6.285 19 C 0.025 3.975 20 C -0.086 4.086 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.118 4.118 26 C -0.055 4.055 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.098 0.902 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.138 14.081 8.779 19.445 hybrid contribution -0.775 0.275 -1.463 1.678 sum -10.913 14.356 7.315 19.460 Atomic orbital electron populations 1.22210 0.98797 0.99810 1.00974 1.21881 0.92576 0.99261 1.01436 1.19843 0.96624 0.90629 0.84922 0.98527 1.21028 0.89068 1.43237 1.02137 0.90042 1.24882 0.94728 0.94463 0.98532 1.69943 1.10996 1.45018 1.27075 0.87264 0.82575 0.77918 0.83630 1.20891 1.21271 1.17424 1.63570 1.01510 1.22170 1.36638 1.23078 0.92317 0.92701 1.01074 1.23296 0.97714 0.98174 1.01263 1.23555 0.94945 0.81124 0.99050 0.91112 1.88015 1.78702 1.16583 1.45244 1.21299 0.98211 0.86769 0.91186 1.19673 0.95193 0.94620 0.99069 1.21120 0.95406 0.95650 0.99424 1.21157 0.99717 0.94265 0.99064 1.21180 0.94501 0.99805 0.98152 1.21134 0.96949 0.95841 1.00424 1.21073 0.99757 0.93898 0.97050 1.22799 0.95405 0.87411 0.99925 0.94039 0.94461 0.92154 0.92597 0.91852 0.92700 0.91456 0.92106 0.91025 0.91807 0.92790 0.92530 0.85773 0.85935 0.86151 0.86050 0.86024 0.90235 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 8.37 37.16 0.31 -2.56 16 2 C -0.11 -2.48 4.80 -26.73 -0.13 -2.60 16 3 C 0.19 4.42 1.12 -68.87 -0.08 4.34 16 4 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 5 C -0.52 -14.36 8.02 -34.44 -0.28 -14.63 16 6 H 0.08 2.46 6.84 -52.48 -0.36 2.10 16 7 C 0.08 2.19 5.36 -17.82 -0.10 2.09 16 8 N -0.89 -27.16 13.96 55.43 0.77 -26.39 16 9 Si 0.86 21.23 25.72 -169.99 -4.37 16.86 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.80 5.37 56.52 0.30 -5.49 16 13 N -0.51 -10.61 5.02 -224.37 -1.13 -11.74 16 14 C 0.04 0.61 4.86 -2.84 -0.01 0.60 16 15 C -0.17 -2.49 6.66 -24.91 -0.17 -2.65 16 16 C 0.07 1.15 3.51 -24.34 -0.09 1.07 16 17 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 18 O -0.37 -5.93 10.15 -35.23 -0.36 -6.29 16 19 C 0.10 1.27 5.94 36.00 0.21 1.48 16 20 C -0.09 -1.05 5.51 -104.62 -0.58 -1.63 16 21 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 25 C -0.10 -1.13 9.70 -39.59 -0.38 -1.52 16 26 C 0.07 1.46 5.09 -2.05 -0.01 1.45 16 27 H 0.04 0.73 7.48 -51.93 -0.39 0.34 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.99 5.28 -51.93 -0.27 0.71 16 30 H 0.06 1.29 4.85 -51.93 -0.25 1.03 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.07 1.04 7.43 -51.93 -0.39 0.65 16 34 H 0.06 1.05 5.16 -51.93 -0.27 0.78 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.08 1.66 7.67 -51.93 -0.40 1.26 16 45 H 0.06 1.48 7.39 -51.93 -0.38 1.09 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -30.83 346.98 -10.05 -40.88 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.33 Total: 2.44 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.86 Total: -20.99 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.35 Total: -38.13 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.36 Total: -6.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.37 Total: 16.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.83 -10.05 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384312203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.275 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds