Wall clock time and date at job start Tue Mar 31 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47364 * 2 1 4 4 H 1.09000 * 109.46919 * 306.75536 * 3 2 1 5 5 C 1.50699 * 109.47700 * 186.75489 * 3 2 1 6 6 H 1.08003 * 120.00596 * 245.37228 * 5 3 2 7 7 C 1.37877 * 119.99677 * 65.36147 * 5 3 2 8 8 N 1.31516 * 120.00236 * 192.27162 * 7 5 3 9 9 Si 1.86802 * 120.00051 * 12.27906 * 7 5 3 10 10 H 1.48500 * 109.47144 * 95.28414 * 9 7 5 11 11 H 1.48505 * 109.47046 * 215.28785 * 9 7 5 12 12 H 1.48497 * 109.47012 * 335.28466 * 9 7 5 13 13 N 1.46905 * 109.47370 * 66.75338 * 3 2 1 14 14 C 1.47447 * 110.99955 * 285.34517 * 13 3 2 15 15 C 1.54314 * 107.23073 * 236.74017 * 14 13 3 16 16 C 1.55134 * 103.18001 * 337.62825 * 15 14 13 17 17 H 1.09004 * 110.99633 * 277.65513 * 16 15 14 18 18 O 1.42906 * 110.99283 * 153.83429 * 16 15 14 19 19 C 1.42901 * 113.99988 * 91.45544 * 18 16 15 20 20 C 1.50697 * 109.46775 * 180.02562 * 19 18 16 21 21 C 1.38245 * 119.99698 * 269.72511 * 20 19 18 22 22 C 1.38230 * 120.00016 * 179.77081 * 21 20 19 23 23 C 1.38244 * 119.99726 * 0.48243 * 22 21 20 24 24 C 1.38234 * 119.99916 * 359.78773 * 23 22 21 25 25 C 1.38228 * 120.00295 * 89.99942 * 20 19 18 26 26 C 1.47841 * 111.00266 * 164.50220 * 13 3 2 27 27 H 1.08997 * 109.46709 * 52.52466 * 1 2 3 28 28 H 1.08999 * 109.46778 * 172.52968 * 1 2 3 29 29 H 1.08998 * 109.46886 * 292.52992 * 1 2 3 30 30 H 1.09000 * 109.47390 * 239.99560 * 2 1 3 31 31 H 1.09003 * 109.46784 * 119.99690 * 2 1 3 32 32 H 0.96997 * 120.00289 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.88701 * 117.33473 * 14 13 3 34 34 H 1.08992 * 110.02171 * 356.22491 * 14 13 3 35 35 H 1.08996 * 110.70671 * 96.10156 * 15 14 13 36 36 H 1.09007 * 110.70361 * 219.16372 * 15 14 13 37 37 H 1.08994 * 109.46799 * 300.00368 * 19 18 16 38 38 H 1.09001 * 109.47027 * 60.00086 * 19 18 16 39 39 H 1.08005 * 119.99691 * 359.97438 * 21 20 19 40 40 H 1.08001 * 120.00328 * 180.25079 * 22 21 20 41 41 H 1.08002 * 119.99608 * 179.76890 * 23 22 21 42 42 H 1.08001 * 119.99919 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00082 * 359.97438 * 25 20 19 44 44 H 1.08999 * 110.37621 * 265.19737 * 26 13 3 45 45 H 1.09002 * 110.37176 * 27.42021 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5814 1.9899 -0.8234 5 6 3.5378 1.4458 -0.1671 6 1 4.1696 1.8031 0.6326 7 6 4.1014 0.9925 -1.3409 8 7 5.3954 0.7665 -1.4047 9 14 3.0271 0.6994 -2.8407 10 1 3.0560 1.9010 -3.7128 11 1 3.5396 -0.4725 -3.5954 12 1 1.6316 0.4365 -2.4063 13 7 1.6880 2.0864 1.2726 14 6 0.2517 2.4168 1.3179 15 6 0.1396 3.9334 1.5797 16 6 1.5023 4.2810 2.2347 17 1 1.4929 4.0527 3.3005 18 8 1.8441 5.6502 2.0096 19 6 1.3965 6.5374 3.0365 20 6 1.8088 7.9467 2.6975 21 6 3.0262 8.4348 3.1345 22 6 3.4065 9.7259 2.8196 23 6 2.5651 10.5323 2.0761 24 6 1.3454 10.0461 1.6439 25 6 0.9673 8.7533 1.9545 26 6 2.4634 3.3295 1.4697 27 1 -0.3632 0.6252 -0.8156 28 1 -0.3633 -1.0190 -0.1336 29 1 -0.3633 0.3938 0.9492 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.7920 0.4480 -2.2306 33 1 -0.2305 1.8646 2.1246 34 1 -0.2185 2.1689 0.3664 35 1 0.0118 4.4776 0.6440 36 1 -0.6821 4.1468 2.2635 37 1 0.3106 6.4854 3.1136 38 1 1.8426 6.2467 3.9876 39 1 3.6815 7.8061 3.7192 40 1 4.3593 10.1058 3.1575 41 1 2.8606 11.5423 1.8333 42 1 0.6879 10.6763 1.0634 43 1 0.0146 8.3733 1.6165 44 1 3.3540 3.1308 2.0660 45 1 2.7403 3.7607 0.5077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384312203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:21 Heat of formation + Delta-G solvation = -26.133204 kcal Electronic energy + Delta-G solvation = -23040.399667 eV Core-core repulsion = 19829.255059 eV Total energy + Delta-G solvation = -3211.144608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65613 -40.04020 -38.25382 -35.53845 -34.02235 -32.76058 -31.80350 -31.42249 -29.19663 -28.46200 -26.75719 -24.81049 -23.49237 -22.35285 -22.17086 -21.99932 -21.16612 -18.95944 -18.06749 -17.68881 -17.10726 -16.60291 -16.48151 -16.18304 -15.40755 -15.26674 -15.08171 -14.81452 -14.66127 -14.30568 -14.23542 -13.99591 -13.80675 -13.58607 -13.52093 -13.27134 -12.98311 -12.71682 -12.63297 -12.32719 -12.26365 -11.94306 -11.83679 -11.79716 -11.53695 -11.44822 -11.12476 -10.93422 -10.65305 -10.44862 -9.83562 -9.77174 -9.04190 -8.30370 -6.30114 0.32717 0.48659 1.30193 1.34301 1.44261 2.33187 2.49202 3.01367 3.05047 3.45962 3.71290 3.76696 3.90799 3.97442 4.11863 4.14695 4.27849 4.31133 4.34942 4.43079 4.45683 4.47483 4.57024 4.63629 4.67726 4.76041 4.79753 4.87399 4.92831 5.02552 5.06808 5.08288 5.14377 5.20783 5.21996 5.28828 5.35851 5.48347 5.53586 5.59178 5.66511 5.80300 6.03403 6.08694 6.20941 6.34239 6.67548 6.76218 7.34028 8.86192 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.003715 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.005313 B = 7534.519028 C = 8260.587530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.193 3.807 4 H -0.010 1.010 5 C -0.519 4.519 6 H 0.038 0.962 7 C 0.018 3.982 8 N -0.943 5.943 9 Si 0.922 3.078 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.222 1.222 13 N -0.523 5.523 14 C 0.032 3.968 15 C -0.154 4.154 16 C 0.085 3.915 17 H 0.092 0.908 18 O -0.393 6.393 19 C 0.100 3.900 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.131 4.131 25 C -0.113 4.113 26 C 0.072 3.928 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.132 0.868 44 H 0.055 0.945 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.922 15.346 8.921 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.085 3.915 4 H 0.007 0.993 5 C -0.557 4.557 6 H 0.056 0.944 7 C -0.180 4.180 8 N -0.583 5.583 9 Si 0.746 3.254 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.144 1.144 13 N -0.248 5.248 14 C -0.095 4.095 15 C -0.193 4.193 16 C 0.027 3.973 17 H 0.109 0.891 18 O -0.312 6.312 19 C 0.024 3.976 20 C -0.109 4.109 21 C -0.136 4.136 22 C -0.151 4.151 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.131 4.131 26 C -0.057 4.057 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.149 0.851 44 H 0.073 0.927 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -13.575 14.978 9.049 22.147 hybrid contribution 0.392 0.108 -1.433 1.490 sum -13.183 15.086 7.616 21.433 Atomic orbital electron populations 1.22122 0.94993 1.01600 1.02207 1.21776 0.95945 0.97152 1.00326 1.19683 0.93441 0.92257 0.86165 0.99278 1.21308 0.91525 1.41930 1.00918 0.94371 1.25730 0.95972 0.94492 1.01758 1.70088 1.13168 1.47064 1.28024 0.86247 0.82162 0.77644 0.79318 1.21040 1.20880 1.14435 1.63483 1.04184 1.22449 1.34719 1.23232 0.89500 0.94537 1.02209 1.23237 0.97976 0.96416 1.01658 1.23344 0.93975 0.80638 0.99394 0.89065 1.87980 1.79455 1.16759 1.47017 1.21489 0.99404 0.86150 0.90541 1.19829 0.95937 0.94814 1.00271 1.21330 0.95591 0.96575 1.00083 1.21469 1.00703 0.93909 0.98971 1.21561 0.94186 1.00909 0.97279 1.21485 0.97485 0.95707 1.00226 1.21315 1.00194 0.94535 0.97084 1.22634 0.96157 0.88656 0.98240 0.93570 0.92219 0.90406 0.93976 0.92860 0.92639 0.88855 0.91874 0.91922 0.87895 0.90832 0.91534 0.85640 0.84074 0.83589 0.83740 0.85053 0.92686 0.95673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 8.37 71.98 0.60 -4.28 16 2 C -0.11 -4.82 4.80 30.59 0.15 -4.67 16 3 C 0.19 9.12 1.12 44.17 0.05 9.17 16 4 H -0.01 -0.50 6.46 -2.39 -0.02 -0.51 16 5 C -0.52 -30.19 8.02 25.60 0.21 -29.99 16 6 H 0.04 2.48 6.84 -2.91 -0.02 2.46 16 7 C 0.02 1.08 5.36 84.65 0.45 1.53 16 8 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 9 Si 0.92 44.43 25.72 68.60 1.76 46.20 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.22 -9.58 5.37 99.48 0.53 -9.05 16 13 N -0.52 -21.51 5.02 -863.78 -4.34 -25.85 16 14 C 0.03 1.00 4.86 86.64 0.42 1.42 16 15 C -0.15 -4.18 6.66 31.77 0.21 -3.97 16 16 C 0.08 2.64 3.51 32.14 0.11 2.75 16 17 H 0.09 2.46 7.90 -2.39 -0.02 2.44 16 18 O -0.39 -12.56 10.15 -148.98 -1.51 -14.08 16 19 C 0.10 2.36 5.94 71.23 0.42 2.78 16 20 C -0.11 -2.60 5.51 -19.87 -0.11 -2.71 16 21 C -0.12 -2.70 9.70 22.27 0.22 -2.49 16 22 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 23 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 24 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 25 C -0.11 -2.43 9.70 22.27 0.22 -2.21 16 26 C 0.07 3.00 5.09 86.94 0.44 3.44 16 27 H 0.05 1.44 7.48 -2.39 -0.02 1.42 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.22 5.28 -2.39 -0.01 2.20 16 30 H 0.04 1.87 4.85 -2.39 -0.01 1.86 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 33 H 0.09 2.45 7.43 -2.39 -0.02 2.43 16 34 H 0.06 1.95 5.16 -2.39 -0.01 1.94 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 38 H 0.07 1.40 8.05 -2.39 -0.02 1.38 16 39 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.05 2.49 7.67 -2.39 -0.02 2.47 16 45 H 0.02 1.22 7.39 -2.39 -0.02 1.20 16 Total: -1.00 -70.68 346.98 1.06 -69.62 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.78 Total: 19.54 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 4.06 Total: -35.68 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -4.04 Total: -85.60 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.51 Total: -14.08 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.76 Total: 46.20 kcal Total: -70.68 1.06 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384312203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.482 kcal (2) G-P(sol) polarization free energy of solvation -70.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds