Wall clock time and date at job start Tue Mar 31 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 H 1.09002 * 109.46926 * 55.89945 * 3 2 1 5 5 C 1.50703 * 109.47201 * 175.89737 * 3 2 1 6 6 H 1.07998 * 120.00174 * 116.59792 * 5 3 2 7 7 C 1.37878 * 119.99748 * 296.59584 * 5 3 2 8 8 N 1.31513 * 120.00396 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99545 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47092 * 269.99733 * 9 7 5 11 11 H 1.48498 * 109.47283 * 29.99926 * 9 7 5 12 12 H 1.48498 * 109.46857 * 150.00303 * 9 7 5 13 13 N 1.46899 * 109.47425 * 295.89712 * 3 2 1 14 14 C 1.47895 * 111.00041 * 301.30366 * 13 3 2 15 15 C 1.53992 * 107.05733 * 214.15050 * 14 13 3 16 16 C 1.54593 * 105.14107 * 1.22719 * 15 14 13 17 17 H 1.09000 * 110.72365 * 263.41542 * 16 15 14 18 18 O 1.42903 * 110.72319 * 140.30975 * 16 15 14 19 19 C 1.42905 * 113.99591 * 91.45867 * 18 16 15 20 20 C 1.50696 * 109.46756 * 180.02562 * 19 18 16 21 21 C 1.38236 * 119.99776 * 269.71709 * 20 19 18 22 22 C 1.38234 * 119.99865 * 179.76425 * 21 20 19 23 23 C 1.38239 * 119.99942 * 0.49674 * 22 21 20 24 24 C 1.38228 * 119.99926 * 359.78090 * 23 22 21 25 25 C 1.38227 * 120.00163 * 359.96492 * 24 23 22 26 26 C 1.48533 * 111.00102 * 183.90558 * 13 3 2 27 27 H 1.08997 * 109.47093 * 295.22799 * 1 2 3 28 28 H 1.09001 * 109.46567 * 55.22653 * 1 2 3 29 29 H 1.08999 * 109.46866 * 175.22370 * 1 2 3 30 30 H 1.08998 * 109.47502 * 240.00370 * 2 1 3 31 31 H 1.09003 * 109.47015 * 120.00039 * 2 1 3 32 32 H 0.96997 * 119.99820 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.91829 * 333.50963 * 14 13 3 34 34 H 1.09006 * 109.91743 * 94.60488 * 14 13 3 35 35 H 1.09009 * 110.30424 * 120.14000 * 15 14 13 36 36 H 1.09000 * 110.31318 * 242.20925 * 15 14 13 37 37 H 1.09004 * 109.47037 * 299.99461 * 19 18 16 38 38 H 1.08995 * 109.47277 * 59.99743 * 19 18 16 39 39 H 1.07998 * 120.00424 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.00425 * 180.25681 * 22 21 20 41 41 H 1.08004 * 119.99938 * 179.76588 * 23 22 21 42 42 H 1.07999 * 119.99733 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.00034 * 179.97438 * 25 24 23 44 44 H 1.09004 * 110.66668 * 278.15749 * 26 13 3 45 45 H 1.08998 * 110.66714 * 41.28889 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6179 1.9771 0.8510 5 6 3.5436 1.4437 0.1017 6 1 4.1391 1.8429 -0.7061 7 6 4.1589 0.9353 1.2259 8 7 3.4338 0.4489 2.2093 9 14 6.0228 0.9362 1.3515 10 1 6.5574 -0.3302 0.7898 11 1 6.5698 2.0863 0.5879 12 1 6.4227 1.0532 2.7769 13 7 1.6330 2.1059 -1.2459 14 6 2.1627 1.3886 -2.4258 15 6 2.4784 2.4503 -3.4956 16 6 2.1257 3.8040 -2.8375 17 1 1.1236 4.1228 -3.1243 18 8 3.0897 4.8006 -3.1831 19 6 2.7554 5.5520 -4.3518 20 6 3.8353 6.5678 -4.6218 21 6 3.7472 7.8329 -4.0717 22 6 4.7403 8.7632 -4.3153 23 6 5.8162 8.4316 -5.1175 24 6 5.9014 7.1684 -5.6722 25 6 4.9110 6.2365 -5.4243 26 6 2.1903 3.4805 -1.3237 27 1 -0.3633 0.4380 0.9296 28 1 -0.3632 0.5861 -0.8442 29 1 -0.3633 -1.0241 -0.0856 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8668 0.0916 3.0003 33 1 3.0718 0.8511 -2.1563 34 1 1.4157 0.6893 -2.8016 35 1 3.5363 2.4210 -3.7570 36 1 1.8656 2.2879 -4.3823 37 1 2.6693 4.8785 -5.2045 38 1 1.8057 6.0636 -4.1956 39 1 2.9048 8.0933 -3.4481 40 1 4.6737 9.7503 -3.8822 41 1 6.5902 9.1597 -5.3109 42 1 6.7417 6.9095 -6.2992 43 1 4.9773 5.2496 -5.8581 44 1 1.5752 4.1777 -0.7547 45 1 3.2211 3.4982 -0.9701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384312204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:24 Heat of formation + Delta-G solvation = -20.082514 kcal Electronic energy + Delta-G solvation = -23070.775992 eV Core-core repulsion = 19859.893761 eV Total energy + Delta-G solvation = -3210.882231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.49578 -38.69118 -36.77076 -33.73585 -31.97014 -31.44008 -30.99829 -29.36333 -27.76073 -26.16905 -25.59743 -23.03323 -22.67659 -21.47150 -21.07764 -20.36373 -18.79680 -17.07409 -16.68135 -16.37204 -15.62580 -15.50043 -15.05034 -14.52391 -14.11820 -13.85771 -13.80957 -13.47220 -13.05727 -12.91401 -12.77619 -12.44715 -12.33302 -12.00814 -11.62298 -11.43591 -11.26410 -11.07985 -10.94028 -10.91277 -10.70769 -10.56594 -10.48459 -10.06386 -9.95782 -9.66875 -9.54008 -9.19540 -9.09987 -9.01125 -8.90820 -8.35120 -7.21918 -5.99074 -4.10236 1.18211 1.30984 3.28673 3.36043 3.40647 3.52601 4.13309 4.42002 4.72473 4.78821 4.90630 5.01756 5.10695 5.21872 5.26524 5.29932 5.34963 5.45490 5.49245 5.54143 5.58340 5.85560 5.87031 5.94364 6.19226 6.30672 6.32441 6.34320 6.38949 6.45727 6.52561 6.59800 6.64086 6.66444 6.79430 6.86369 6.88499 7.04367 7.17568 7.26403 7.50659 7.64717 7.73672 7.93520 8.12160 8.22413 8.42341 8.99365 9.56554 11.02126 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.003973 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.276964 B = 7045.387138 C = 8120.058521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.205 3.795 4 H 0.043 0.957 5 C -0.543 4.543 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.286 1.286 13 N -0.513 5.513 14 C 0.042 3.958 15 C -0.151 4.151 16 C 0.083 3.917 17 H 0.066 0.934 18 O -0.370 6.370 19 C 0.102 3.898 20 C -0.084 4.084 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.099 4.099 26 C 0.047 3.953 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 11.372 -14.328 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.098 3.902 4 H 0.061 0.939 5 C -0.582 4.582 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.212 1.212 13 N -0.238 5.238 14 C -0.087 4.087 15 C -0.190 4.190 16 C 0.025 3.975 17 H 0.084 0.916 18 O -0.289 6.289 19 C 0.025 3.975 20 C -0.084 4.084 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.117 4.117 26 C -0.082 4.082 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.088 0.912 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.942 11.313 -14.021 18.040 hybrid contribution 1.820 -0.188 0.051 1.830 sum 0.878 11.125 -13.970 17.880 Atomic orbital electron populations 1.21739 0.98763 0.98569 1.00726 1.21561 0.92352 0.99100 1.01664 1.19410 0.93126 0.91073 0.86577 0.93913 1.21712 0.92625 1.40759 1.03119 0.92278 1.24894 0.97811 0.94951 0.95628 1.69900 1.34922 1.40460 1.07051 0.86706 0.86321 0.78451 0.77266 1.20715 1.19896 1.21184 1.65151 1.53754 1.01050 1.03874 1.22638 0.99526 0.95819 0.90678 1.22909 1.01471 0.95983 0.98614 1.23165 0.90664 0.86857 0.96863 0.91605 1.88035 1.47107 1.49922 1.43842 1.21285 0.94997 0.92002 0.89205 1.19692 0.96461 0.94349 0.97929 1.21099 0.99120 0.93085 0.98414 1.21142 0.94579 0.99569 0.98993 1.21170 0.98122 0.96723 0.97700 1.21136 0.98867 0.93806 1.00492 1.21094 0.93419 0.99271 0.97941 1.23036 1.01218 0.92161 0.91738 0.94132 0.93152 0.95551 0.94857 0.89571 0.92902 0.91905 0.92169 0.91270 0.92307 0.92774 0.92675 0.85866 0.86009 0.86186 0.86043 0.85953 0.91235 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.11 -2.55 5.10 -26.73 -0.14 -2.68 16 3 C 0.20 5.04 1.83 -68.86 -0.13 4.91 16 4 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 5 C -0.54 -14.51 6.30 -34.44 -0.22 -14.72 16 6 H 0.06 1.61 6.04 -52.49 -0.32 1.29 16 7 C 0.07 1.91 5.30 -17.82 -0.09 1.81 16 8 N -0.89 -24.95 11.56 55.43 0.64 -24.31 16 9 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.51 -10.89 4.67 -223.89 -1.05 -11.94 16 14 C 0.04 0.81 4.96 -2.76 -0.01 0.80 16 15 C -0.15 -2.50 6.69 -25.38 -0.17 -2.67 16 16 C 0.08 1.38 3.51 -24.87 -0.09 1.30 16 17 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 18 O -0.37 -6.18 10.07 -35.23 -0.35 -6.53 16 19 C 0.10 1.31 5.93 36.00 0.21 1.52 16 20 C -0.08 -1.07 5.51 -104.62 -0.58 -1.64 16 21 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 25 C -0.10 -1.17 9.70 -39.59 -0.38 -1.56 16 26 C 0.05 0.94 6.05 -1.90 -0.01 0.93 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.98 7.59 -51.93 -0.39 0.59 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.76 6.83 -51.93 -0.35 0.41 16 31 H 0.09 2.27 6.26 -51.93 -0.32 1.94 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.06 1.37 6.07 -51.93 -0.32 1.06 16 34 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.07 1.17 8.07 -51.92 -0.42 0.75 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.07 1.69 6.03 -51.93 -0.31 1.38 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -28.73 356.06 -10.70 -39.42 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.47 Total: 2.65 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.81 Total: -21.00 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.40 Total: -36.25 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.35 Total: -6.53 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.73 -10.70 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384312204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.342 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds