Wall clock time and date at job start Tue Mar 31 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 H 1.09002 * 109.46926 * 55.89945 * 3 2 1 5 5 C 1.50703 * 109.47201 * 175.89737 * 3 2 1 6 6 H 1.07998 * 120.00174 * 116.59792 * 5 3 2 7 7 C 1.37878 * 119.99748 * 296.59584 * 5 3 2 8 8 N 1.31513 * 120.00396 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99545 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47092 * 269.99733 * 9 7 5 11 11 H 1.48498 * 109.47283 * 29.99926 * 9 7 5 12 12 H 1.48498 * 109.46857 * 150.00303 * 9 7 5 13 13 N 1.46899 * 109.47425 * 295.89712 * 3 2 1 14 14 C 1.47895 * 111.00041 * 301.30366 * 13 3 2 15 15 C 1.53992 * 107.05733 * 214.15050 * 14 13 3 16 16 C 1.54593 * 105.14107 * 1.22719 * 15 14 13 17 17 H 1.09000 * 110.72365 * 263.41542 * 16 15 14 18 18 O 1.42903 * 110.72319 * 140.30975 * 16 15 14 19 19 C 1.42905 * 113.99591 * 91.45867 * 18 16 15 20 20 C 1.50696 * 109.46756 * 180.02562 * 19 18 16 21 21 C 1.38236 * 119.99776 * 269.71709 * 20 19 18 22 22 C 1.38234 * 119.99865 * 179.76425 * 21 20 19 23 23 C 1.38239 * 119.99942 * 0.49674 * 22 21 20 24 24 C 1.38228 * 119.99926 * 359.78090 * 23 22 21 25 25 C 1.38227 * 120.00163 * 359.96492 * 24 23 22 26 26 C 1.48533 * 111.00102 * 183.90558 * 13 3 2 27 27 H 1.08997 * 109.47093 * 295.22799 * 1 2 3 28 28 H 1.09001 * 109.46567 * 55.22653 * 1 2 3 29 29 H 1.08999 * 109.46866 * 175.22370 * 1 2 3 30 30 H 1.08998 * 109.47502 * 240.00370 * 2 1 3 31 31 H 1.09003 * 109.47015 * 120.00039 * 2 1 3 32 32 H 0.96997 * 119.99820 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.91829 * 333.50963 * 14 13 3 34 34 H 1.09006 * 109.91743 * 94.60488 * 14 13 3 35 35 H 1.09009 * 110.30424 * 120.14000 * 15 14 13 36 36 H 1.09000 * 110.31318 * 242.20925 * 15 14 13 37 37 H 1.09004 * 109.47037 * 299.99461 * 19 18 16 38 38 H 1.08995 * 109.47277 * 59.99743 * 19 18 16 39 39 H 1.07998 * 120.00424 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.00425 * 180.25681 * 22 21 20 41 41 H 1.08004 * 119.99938 * 179.76588 * 23 22 21 42 42 H 1.07999 * 119.99733 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.00034 * 179.97438 * 25 24 23 44 44 H 1.09004 * 110.66668 * 278.15749 * 26 13 3 45 45 H 1.08998 * 110.66714 * 41.28889 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6179 1.9771 0.8510 5 6 3.5436 1.4437 0.1017 6 1 4.1391 1.8429 -0.7061 7 6 4.1589 0.9353 1.2259 8 7 3.4338 0.4489 2.2093 9 14 6.0228 0.9362 1.3515 10 1 6.5574 -0.3302 0.7898 11 1 6.5698 2.0863 0.5879 12 1 6.4227 1.0532 2.7769 13 7 1.6330 2.1059 -1.2459 14 6 2.1627 1.3886 -2.4258 15 6 2.4784 2.4503 -3.4956 16 6 2.1257 3.8040 -2.8375 17 1 1.1236 4.1228 -3.1243 18 8 3.0897 4.8006 -3.1831 19 6 2.7554 5.5520 -4.3518 20 6 3.8353 6.5678 -4.6218 21 6 3.7472 7.8329 -4.0717 22 6 4.7403 8.7632 -4.3153 23 6 5.8162 8.4316 -5.1175 24 6 5.9014 7.1684 -5.6722 25 6 4.9110 6.2365 -5.4243 26 6 2.1903 3.4805 -1.3237 27 1 -0.3633 0.4380 0.9296 28 1 -0.3632 0.5861 -0.8442 29 1 -0.3633 -1.0241 -0.0856 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8668 0.0916 3.0003 33 1 3.0718 0.8511 -2.1563 34 1 1.4157 0.6893 -2.8016 35 1 3.5363 2.4210 -3.7570 36 1 1.8656 2.2879 -4.3823 37 1 2.6693 4.8785 -5.2045 38 1 1.8057 6.0636 -4.1956 39 1 2.9048 8.0933 -3.4481 40 1 4.6737 9.7503 -3.8822 41 1 6.5902 9.1597 -5.3109 42 1 6.7417 6.9095 -6.2992 43 1 4.9773 5.2496 -5.8581 44 1 1.5752 4.1777 -0.7547 45 1 3.2211 3.4982 -0.9701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384312204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:24 Heat of formation + Delta-G solvation = -35.573454 kcal Electronic energy + Delta-G solvation = -23071.447729 eV Core-core repulsion = 19859.893761 eV Total energy + Delta-G solvation = -3211.553968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57979 -39.97113 -38.16170 -35.47683 -33.61109 -32.72280 -31.79660 -30.96156 -29.23885 -27.99289 -26.71324 -24.89034 -23.48649 -22.87128 -22.21400 -21.82418 -20.59594 -18.55259 -18.04775 -17.70378 -17.00414 -16.47719 -16.40601 -15.97759 -15.72011 -15.23977 -14.98247 -14.72194 -14.42216 -14.26393 -14.06658 -13.99562 -13.67787 -13.30736 -13.19993 -13.03024 -12.88588 -12.61744 -12.45656 -12.27555 -12.16308 -11.93812 -11.88439 -11.83364 -11.65967 -11.49858 -11.24242 -11.01630 -10.50000 -10.40174 -9.82896 -9.76037 -9.05784 -8.07260 -6.26032 0.33888 0.49337 1.33954 1.36383 1.45383 2.38451 2.55127 3.08236 3.14049 3.63267 3.76159 3.89444 3.94460 4.01313 4.14462 4.17765 4.28628 4.36356 4.41643 4.51467 4.57509 4.65178 4.71777 4.75487 4.76789 4.88820 4.93344 5.04031 5.07259 5.11437 5.13756 5.15215 5.21501 5.28910 5.42955 5.46720 5.54294 5.59683 5.60289 5.67694 5.77179 5.98235 6.09479 6.15270 6.27360 6.35514 6.52117 6.93468 7.43161 8.90674 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.003973 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.276964 B = 7045.387138 C = 8120.058521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C 0.212 3.788 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.048 0.952 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.281 1.281 13 N -0.508 5.508 14 C 0.042 3.958 15 C -0.142 4.142 16 C 0.096 3.904 17 H 0.091 0.909 18 O -0.394 6.394 19 C 0.099 3.901 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.116 4.116 26 C 0.042 3.958 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.262 0.738 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.127 0.873 44 H 0.071 0.929 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 12.225 -16.330 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C 0.104 3.896 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.066 0.934 7 C -0.176 4.176 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.207 1.207 13 N -0.233 5.233 14 C -0.087 4.087 15 C -0.180 4.180 16 C 0.038 3.962 17 H 0.109 0.891 18 O -0.313 6.313 19 C 0.024 3.976 20 C -0.107 4.107 21 C -0.133 4.133 22 C -0.149 4.149 23 C -0.140 4.140 24 C -0.150 4.150 25 C -0.134 4.134 26 C -0.086 4.086 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.145 0.855 44 H 0.089 0.911 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.953 12.171 -16.039 20.157 hybrid contribution 1.849 -0.368 0.641 1.992 sum 0.896 11.803 -15.398 19.422 Atomic orbital electron populations 1.21604 0.95978 1.00216 1.00799 1.21397 0.94779 0.97775 1.00140 1.19163 0.91756 0.91622 0.87043 0.97628 1.21910 0.93929 1.40116 1.02741 0.93383 1.25551 1.01562 0.94964 0.95529 1.70011 1.36276 1.41237 1.07427 0.85821 0.81868 0.78326 0.77244 1.20003 1.20274 1.20669 1.65066 1.53519 1.01515 1.03189 1.22669 0.98539 0.96712 0.90753 1.22854 1.01784 0.94625 0.98752 1.22960 0.91993 0.87356 0.93874 0.89091 1.88003 1.47453 1.50172 1.45718 1.21479 0.95874 0.92115 0.88177 1.19833 0.97079 0.94790 0.99033 1.21328 0.99967 0.93271 0.98757 1.21479 0.94267 1.00338 0.98849 1.21553 0.98489 0.97079 0.96864 1.21464 0.99114 0.93857 1.00587 1.21311 0.93791 1.00007 0.98301 1.23012 0.98840 0.91812 0.94952 0.94822 0.92095 0.93232 0.94680 0.92663 0.92891 0.94935 0.90498 0.91997 0.88744 0.91378 0.91185 0.85249 0.83858 0.83609 0.83982 0.85471 0.91091 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.85 71.98 0.71 -4.37 16 2 C -0.10 -4.87 5.10 30.59 0.16 -4.71 16 3 C 0.21 10.72 1.83 44.17 0.08 10.80 16 4 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 5 C -0.55 -30.23 6.30 25.60 0.16 -30.07 16 6 H 0.05 2.71 6.04 -2.91 -0.02 2.69 16 7 C 0.02 1.34 5.30 84.66 0.45 1.79 16 8 N -0.91 -52.72 11.56 21.45 0.25 -52.47 16 9 Si 0.94 44.73 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.51 -21.62 4.67 -862.25 -4.03 -25.64 16 14 C 0.04 1.58 4.96 86.45 0.43 2.01 16 15 C -0.14 -4.42 6.69 31.47 0.21 -4.20 16 16 C 0.10 3.08 3.51 31.80 0.11 3.19 16 17 H 0.09 2.48 7.88 -2.39 -0.02 2.46 16 18 O -0.39 -12.78 10.07 -148.98 -1.50 -14.28 16 19 C 0.10 2.39 5.93 71.23 0.42 2.82 16 20 C -0.11 -2.60 5.51 -19.87 -0.11 -2.71 16 21 C -0.12 -2.56 9.70 22.27 0.22 -2.35 16 22 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 23 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 24 C -0.13 -2.54 10.05 22.26 0.22 -2.32 16 25 C -0.12 -2.61 9.70 22.27 0.22 -2.40 16 26 C 0.04 1.73 6.05 86.65 0.52 2.26 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 2.27 7.59 -2.39 -0.02 2.25 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 1.61 6.83 -2.39 -0.02 1.60 16 31 H 0.05 2.98 6.26 -2.39 -0.01 2.96 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.03 1.43 6.07 -2.39 -0.01 1.42 16 34 H 0.08 2.65 8.11 -2.38 -0.02 2.63 16 35 H 0.06 2.02 8.07 -2.38 -0.02 2.00 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 1.42 8.09 -2.38 -0.02 1.41 16 38 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 39 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 45 H 0.04 1.72 6.03 -2.39 -0.01 1.71 16 Total: -1.00 -63.46 356.06 1.94 -61.52 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.94 Total: 18.58 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 4.25 Total: -34.47 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -3.78 Total: -78.11 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.50 Total: -14.28 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -63.46 1.94 -61.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384312204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.951 kcal (2) G-P(sol) polarization free energy of solvation -63.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds