Wall clock time and date at job start Tue Mar 31 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 H 1.08994 * 109.46837 * 55.00474 * 3 2 1 5 5 C 1.50697 * 109.46832 * 175.00274 * 3 2 1 6 6 H 1.07996 * 120.00331 * 120.00411 * 5 3 2 7 7 C 1.37882 * 120.00170 * 299.99932 * 5 3 2 8 8 N 1.31510 * 119.99814 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00236 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46967 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46921 * 119.99852 * 9 7 5 12 12 H 1.48494 * 109.47332 * 240.00128 * 9 7 5 13 13 N 1.46900 * 109.47286 * 295.00350 * 3 2 1 14 14 C 1.48539 * 110.99796 * 292.39344 * 13 3 2 15 15 C 1.54932 * 103.22489 * 200.27757 * 14 13 3 16 16 C 1.54598 * 102.92273 * 37.41993 * 15 14 13 17 17 H 1.09002 * 110.31174 * 96.95391 * 16 15 14 18 18 O 1.42898 * 110.39115 * 219.07944 * 16 15 14 19 19 C 1.42898 * 114.00393 * 267.14956 * 18 16 15 20 20 C 1.50695 * 109.47380 * 179.97438 * 19 18 16 21 21 C 1.38233 * 120.00437 * 269.72766 * 20 19 18 22 22 C 1.38232 * 120.00250 * 179.78527 * 21 20 19 23 23 C 1.38236 * 120.00010 * 0.46926 * 22 21 20 24 24 C 1.38236 * 119.99655 * 359.76380 * 23 22 21 25 25 C 1.38237 * 119.99588 * 90.00319 * 20 19 18 26 26 C 1.47897 * 110.99752 * 175.00222 * 13 3 2 27 27 H 1.08999 * 109.47445 * 60.00005 * 1 2 3 28 28 H 1.09001 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47377 * 299.99529 * 1 2 3 30 30 H 1.09005 * 109.46702 * 240.00648 * 2 1 3 31 31 H 1.09001 * 109.47039 * 120.00637 * 2 1 3 32 32 H 0.97000 * 119.99998 * 179.97438 * 8 7 5 33 33 H 1.08999 * 110.66816 * 318.71519 * 14 13 3 34 34 H 1.09005 * 110.66277 * 81.67794 * 14 13 3 35 35 H 1.08994 * 110.72994 * 279.05876 * 15 14 13 36 36 H 1.09002 * 110.72359 * 155.77140 * 15 14 13 37 37 H 1.09004 * 109.46913 * 300.00578 * 19 18 16 38 38 H 1.09001 * 109.46791 * 59.99951 * 19 18 16 39 39 H 1.07998 * 119.99928 * 0.02562 * 21 20 19 40 40 H 1.08000 * 120.00161 * 180.25394 * 22 21 20 41 41 H 1.07998 * 120.00648 * 179.78606 * 23 22 21 42 42 H 1.08006 * 120.00187 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.00147 * 359.97438 * 25 20 19 44 44 H 1.08997 * 109.92227 * 26.48731 * 26 13 3 45 45 H 1.09000 * 110.07910 * 265.28360 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0049 0.8811 1.3817 10 1 6.5986 1.5472 0.1946 11 1 6.3990 1.6166 2.6101 12 1 6.4970 -0.5176 1.4628 13 7 1.6513 2.0993 -1.2552 14 6 2.3698 1.5052 -2.4115 15 6 2.2638 2.6049 -3.4977 16 6 2.4098 3.9107 -2.6830 17 1 3.4400 4.2651 -2.7175 18 8 1.5243 4.9131 -3.1861 19 6 2.1133 5.7704 -4.1659 20 6 1.0957 6.7827 -4.6247 21 6 0.2798 6.5022 -5.7046 22 6 -0.6567 7.4290 -6.1226 23 6 -0.7707 8.6405 -5.4667 24 6 0.0485 8.9230 -4.3897 25 6 0.9821 7.9944 -3.9689 26 6 2.0232 3.5307 -1.2416 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8294 -0.0619 2.9493 33 1 3.4126 1.3130 -2.1590 34 1 1.8794 0.5885 -2.7394 35 1 1.2937 2.5658 -3.9930 36 1 3.0724 2.5103 -4.2226 37 1 2.9688 6.2864 -3.7300 38 1 2.4432 5.1757 -5.0178 39 1 0.3713 5.5572 -6.2194 40 1 -1.2970 7.2081 -6.9639 41 1 -1.5000 9.3661 -5.7953 42 1 -0.0408 9.8694 -3.8769 43 1 1.6223 8.2153 -3.1277 44 1 2.8720 3.6876 -0.5759 45 1 1.1772 4.1341 -0.9127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384312206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:29 Heat of formation + Delta-G solvation = -19.269724 kcal Electronic energy + Delta-G solvation = -22982.589310 eV Core-core repulsion = 19771.742324 eV Total energy + Delta-G solvation = -3210.846985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.51222 -38.68782 -36.72828 -33.76052 -31.96840 -31.41793 -31.01501 -29.33739 -27.80867 -26.14765 -25.61895 -23.04993 -22.69170 -21.45036 -21.11563 -20.21107 -19.00934 -17.10921 -16.67748 -16.25925 -15.62842 -15.53272 -15.22403 -14.37382 -14.08525 -13.94534 -13.83079 -13.49696 -13.07878 -12.88351 -12.66960 -12.45244 -12.18401 -12.02272 -11.70722 -11.40928 -11.22493 -11.11165 -10.99425 -10.91037 -10.83133 -10.58268 -10.42307 -10.15323 -9.95895 -9.60985 -9.55693 -9.18505 -9.07042 -9.02869 -8.92275 -8.37631 -7.16516 -6.00940 -4.14345 1.16671 1.29120 3.23347 3.32370 3.34233 3.52320 4.15595 4.36772 4.71174 4.78495 4.89333 4.99275 5.06922 5.14766 5.23825 5.30214 5.32540 5.40933 5.48352 5.55391 5.65544 5.85434 5.92725 5.97156 6.23656 6.28698 6.33180 6.37037 6.37107 6.48064 6.51540 6.51819 6.62006 6.72826 6.74615 6.86341 6.86899 7.10362 7.21334 7.33494 7.54818 7.59810 7.74425 7.96837 8.13878 8.24742 8.43616 8.96228 9.52575 10.98388 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.003383 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.973092 B = 8274.594603 C = 8807.359514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.203 3.797 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.511 5.511 14 C 0.040 3.960 15 C -0.146 4.146 16 C 0.081 3.919 17 H 0.059 0.941 18 O -0.369 6.369 19 C 0.100 3.900 20 C -0.083 4.083 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.099 4.099 26 C 0.045 3.955 27 H 0.048 0.952 28 H 0.025 0.975 29 H 0.039 0.961 30 H 0.030 0.970 31 H 0.092 0.908 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.065 0.935 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 12.081 -14.045 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C 0.096 3.904 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.235 5.235 14 C -0.088 4.088 15 C -0.184 4.184 16 C 0.023 3.977 17 H 0.077 0.923 18 O -0.288 6.288 19 C 0.023 3.977 20 C -0.083 4.083 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.117 4.117 26 C -0.084 4.084 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.083 0.917 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.029 11.934 -13.829 18.946 hybrid contribution 2.223 -0.007 0.222 2.234 sum -2.807 11.927 -13.607 18.311 Atomic orbital electron populations 1.21714 0.98841 0.98396 1.00663 1.21531 0.92274 0.98964 1.01845 1.19423 0.93103 0.91468 0.86359 0.94344 1.21751 0.92784 1.38289 1.05482 0.92339 1.24916 0.97791 0.95023 0.95668 1.69887 1.34703 1.38105 1.09395 0.86637 0.86207 0.77759 0.77982 1.19960 1.21003 1.20970 1.65132 1.52733 1.00625 1.05037 1.23076 0.99193 0.96174 0.90400 1.23024 1.01560 0.95684 0.98137 1.23110 0.92150 0.87445 0.95016 0.92262 1.88057 1.38762 1.44953 1.57003 1.21298 0.93495 0.90692 0.92188 1.19691 0.97995 0.94674 0.95968 1.21089 0.94975 0.99095 0.96567 1.21136 0.98688 0.94173 1.00307 1.21168 0.99224 0.97123 0.96232 1.21144 0.96283 0.99525 0.97332 1.21109 0.98363 0.93400 0.98878 1.22747 1.00717 0.92047 0.92857 0.93312 0.95623 0.94225 0.95071 0.89024 0.92910 0.91868 0.91444 0.90689 0.92290 0.92741 0.92787 0.85942 0.86043 0.86193 0.86022 0.85879 0.91682 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.80 37.16 0.36 -2.54 16 2 C -0.11 -2.57 5.22 -26.73 -0.14 -2.71 16 3 C 0.20 5.00 1.72 -68.87 -0.12 4.89 16 4 H 0.04 1.06 8.13 -51.93 -0.42 0.64 16 5 C -0.54 -14.21 6.43 -34.44 -0.22 -14.43 16 6 H 0.06 1.52 5.99 -52.49 -0.31 1.21 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.94 16 9 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 N -0.51 -11.01 4.72 -223.89 -1.06 -12.07 16 14 C 0.04 0.78 5.47 -1.90 -0.01 0.77 16 15 C -0.15 -2.39 6.80 -24.87 -0.17 -2.56 16 16 C 0.08 1.36 3.46 -25.37 -0.09 1.27 16 17 H 0.06 0.93 7.83 -51.93 -0.41 0.53 16 18 O -0.37 -6.00 9.92 -35.23 -0.35 -6.35 16 19 C 0.10 1.28 5.91 36.00 0.21 1.49 16 20 C -0.08 -1.02 5.51 -104.63 -0.58 -1.60 16 21 C -0.10 -1.12 9.70 -39.59 -0.38 -1.50 16 22 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 25 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 26 C 0.04 0.90 6.20 -2.75 -0.02 0.88 16 27 H 0.05 0.99 7.75 -51.93 -0.40 0.59 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.72 6.94 -51.93 -0.36 0.36 16 31 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.06 1.35 5.70 -51.93 -0.30 1.05 16 34 H 0.07 1.29 7.59 -51.93 -0.39 0.90 16 35 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.64 8.05 -51.93 -0.42 0.22 16 38 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 44 H 0.07 1.40 6.66 -51.93 -0.35 1.06 16 45 H 0.07 1.46 7.96 -51.93 -0.41 1.05 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -28.34 355.90 -10.70 -39.03 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.44 Total: 2.87 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.82 Total: -20.61 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.43 Total: -36.01 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.35 Total: -6.35 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.34 -10.70 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384312206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.764 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds