Wall clock time and date at job start Tue Mar 31 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 H 1.08994 * 109.46837 * 55.00474 * 3 2 1 5 5 C 1.50697 * 109.46832 * 175.00274 * 3 2 1 6 6 H 1.07996 * 120.00331 * 120.00411 * 5 3 2 7 7 C 1.37882 * 120.00170 * 299.99932 * 5 3 2 8 8 N 1.31510 * 119.99814 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00236 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46967 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46921 * 119.99852 * 9 7 5 12 12 H 1.48494 * 109.47332 * 240.00128 * 9 7 5 13 13 N 1.46900 * 109.47286 * 295.00350 * 3 2 1 14 14 C 1.48539 * 110.99796 * 292.39344 * 13 3 2 15 15 C 1.54932 * 103.22489 * 200.27757 * 14 13 3 16 16 C 1.54598 * 102.92273 * 37.41993 * 15 14 13 17 17 H 1.09002 * 110.31174 * 96.95391 * 16 15 14 18 18 O 1.42898 * 110.39115 * 219.07944 * 16 15 14 19 19 C 1.42898 * 114.00393 * 267.14956 * 18 16 15 20 20 C 1.50695 * 109.47380 * 179.97438 * 19 18 16 21 21 C 1.38233 * 120.00437 * 269.72766 * 20 19 18 22 22 C 1.38232 * 120.00250 * 179.78527 * 21 20 19 23 23 C 1.38236 * 120.00010 * 0.46926 * 22 21 20 24 24 C 1.38236 * 119.99655 * 359.76380 * 23 22 21 25 25 C 1.38237 * 119.99588 * 90.00319 * 20 19 18 26 26 C 1.47897 * 110.99752 * 175.00222 * 13 3 2 27 27 H 1.08999 * 109.47445 * 60.00005 * 1 2 3 28 28 H 1.09001 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47377 * 299.99529 * 1 2 3 30 30 H 1.09005 * 109.46702 * 240.00648 * 2 1 3 31 31 H 1.09001 * 109.47039 * 120.00637 * 2 1 3 32 32 H 0.97000 * 119.99998 * 179.97438 * 8 7 5 33 33 H 1.08999 * 110.66816 * 318.71519 * 14 13 3 34 34 H 1.09005 * 110.66277 * 81.67794 * 14 13 3 35 35 H 1.08994 * 110.72994 * 279.05876 * 15 14 13 36 36 H 1.09002 * 110.72359 * 155.77140 * 15 14 13 37 37 H 1.09004 * 109.46913 * 300.00578 * 19 18 16 38 38 H 1.09001 * 109.46791 * 59.99951 * 19 18 16 39 39 H 1.07998 * 119.99928 * 0.02562 * 21 20 19 40 40 H 1.08000 * 120.00161 * 180.25394 * 22 21 20 41 41 H 1.07998 * 120.00648 * 179.78606 * 23 22 21 42 42 H 1.08006 * 120.00187 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.00147 * 359.97438 * 25 20 19 44 44 H 1.08997 * 109.92227 * 26.48731 * 26 13 3 45 45 H 1.09000 * 110.07910 * 265.28360 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0049 0.8811 1.3817 10 1 6.5986 1.5472 0.1946 11 1 6.3990 1.6166 2.6101 12 1 6.4970 -0.5176 1.4628 13 7 1.6513 2.0993 -1.2552 14 6 2.3698 1.5052 -2.4115 15 6 2.2638 2.6049 -3.4977 16 6 2.4098 3.9107 -2.6830 17 1 3.4400 4.2651 -2.7175 18 8 1.5243 4.9131 -3.1861 19 6 2.1133 5.7704 -4.1659 20 6 1.0957 6.7827 -4.6247 21 6 0.2798 6.5022 -5.7046 22 6 -0.6567 7.4290 -6.1226 23 6 -0.7707 8.6405 -5.4667 24 6 0.0485 8.9230 -4.3897 25 6 0.9821 7.9944 -3.9689 26 6 2.0232 3.5307 -1.2416 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8294 -0.0619 2.9493 33 1 3.4126 1.3130 -2.1590 34 1 1.8794 0.5885 -2.7394 35 1 1.2937 2.5658 -3.9930 36 1 3.0724 2.5103 -4.2226 37 1 2.9688 6.2864 -3.7300 38 1 2.4432 5.1757 -5.0178 39 1 0.3713 5.5572 -6.2194 40 1 -1.2970 7.2081 -6.9639 41 1 -1.5000 9.3661 -5.7953 42 1 -0.0408 9.8694 -3.8769 43 1 1.6223 8.2153 -3.1277 44 1 2.8720 3.6876 -0.5759 45 1 1.1772 4.1341 -0.9127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384312206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:28 Heat of formation + Delta-G solvation = -34.158716 kcal Electronic energy + Delta-G solvation = -22983.234945 eV Core-core repulsion = 19771.742324 eV Total energy + Delta-G solvation = -3211.492621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57703 -39.94481 -38.12473 -35.48670 -33.55878 -32.71184 -31.77661 -30.93884 -29.29933 -27.95107 -26.70766 -24.90546 -23.46622 -22.85198 -22.20437 -21.64605 -20.87873 -18.47023 -18.02076 -17.55982 -17.19256 -16.49969 -16.38210 -15.96642 -15.57868 -15.23806 -14.99505 -14.83156 -14.26413 -14.19331 -14.03708 -13.89785 -13.68508 -13.29670 -13.19873 -12.96659 -12.88095 -12.64578 -12.54934 -12.35854 -12.04805 -11.89591 -11.87862 -11.79428 -11.64799 -11.40150 -11.38144 -10.99862 -10.47853 -10.40927 -9.80884 -9.74164 -8.98159 -8.03403 -6.25201 0.35801 0.51339 1.37121 1.40184 1.49306 2.40287 2.59728 3.12901 3.17921 3.48630 3.77008 3.87707 3.95225 3.97615 4.16493 4.23890 4.31332 4.36423 4.45449 4.56053 4.58690 4.66569 4.72799 4.77571 4.81467 4.89437 4.91274 4.96569 5.03674 5.09164 5.10012 5.17147 5.24350 5.32312 5.41964 5.48179 5.56400 5.61793 5.62580 5.69660 5.77732 6.04238 6.11337 6.16342 6.31660 6.38594 6.52635 6.95519 7.44908 8.93034 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.003383 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.973092 B = 8274.594603 C = 8807.359514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.211 3.789 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.058 0.942 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.515 5.515 14 C 0.039 3.961 15 C -0.131 4.131 16 C 0.091 3.909 17 H 0.073 0.927 18 O -0.385 6.385 19 C 0.097 3.903 20 C -0.106 4.106 21 C -0.113 4.113 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.132 4.132 25 C -0.117 4.117 26 C 0.044 3.956 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.261 0.739 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.125 0.875 44 H 0.043 0.957 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 12.983 -16.225 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.103 3.897 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.076 0.924 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.239 5.239 14 C -0.089 4.089 15 C -0.170 4.170 16 C 0.033 3.967 17 H 0.091 0.909 18 O -0.305 6.305 19 C 0.022 3.978 20 C -0.106 4.106 21 C -0.131 4.131 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.135 4.135 26 C -0.085 4.085 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.148 0.852 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.143 0.857 44 H 0.061 0.939 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.039 12.848 -16.030 21.152 hybrid contribution 2.150 -0.204 0.872 2.329 sum -2.889 12.644 -15.158 19.950 Atomic orbital electron populations 1.21579 0.96551 0.99814 1.00497 1.21384 0.94299 0.98029 1.00408 1.19177 0.92248 0.91653 0.86609 0.98334 1.21979 0.93667 1.37729 1.05393 0.92402 1.25644 1.01903 0.94927 0.95506 1.70019 1.36302 1.38926 1.09856 0.85661 0.81263 0.77697 0.77945 1.19208 1.20972 1.20691 1.65037 1.53108 1.01409 1.04389 1.23085 0.97750 0.97501 0.90565 1.22947 1.02956 0.93637 0.97411 1.22882 0.92770 0.88243 0.92845 0.90920 1.88023 1.39184 1.45207 1.58088 1.21473 0.93957 0.90596 0.91823 1.19789 0.98842 0.94993 0.96979 1.21305 0.95312 0.99916 0.96588 1.21476 0.98446 0.94023 1.00864 1.21554 0.99228 0.97492 0.95622 1.21460 0.95789 1.00075 0.97609 1.21306 0.99169 0.93766 0.99269 1.22691 0.99450 0.91173 0.95176 0.92716 0.93388 0.95044 0.94909 0.91857 0.92964 0.93660 0.91087 0.90284 0.89364 0.91955 0.91375 0.85221 0.83777 0.83562 0.84001 0.85663 0.93897 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 9.80 71.98 0.71 -4.58 16 2 C -0.10 -4.98 5.22 30.59 0.16 -4.82 16 3 C 0.21 10.68 1.72 44.17 0.08 10.75 16 4 H 0.00 -0.07 8.13 -2.39 -0.02 -0.09 16 5 C -0.55 -29.20 6.43 25.60 0.16 -29.04 16 6 H 0.06 3.03 5.99 -2.91 -0.02 3.02 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -52.02 11.29 21.45 0.24 -51.78 16 9 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.52 -22.42 4.72 -862.25 -4.07 -26.49 16 14 C 0.04 1.49 5.47 86.65 0.47 1.96 16 15 C -0.13 -4.02 6.80 31.80 0.22 -3.80 16 16 C 0.09 2.95 3.46 31.48 0.11 3.06 16 17 H 0.07 2.17 7.83 -2.39 -0.02 2.15 16 18 O -0.39 -12.11 9.92 -148.98 -1.48 -13.59 16 19 C 0.10 2.35 5.91 71.23 0.42 2.77 16 20 C -0.11 -2.49 5.51 -19.87 -0.11 -2.60 16 21 C -0.11 -2.37 9.70 22.27 0.22 -2.16 16 22 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 25 C -0.12 -2.55 9.70 22.27 0.22 -2.34 16 26 C 0.04 1.78 6.20 86.45 0.54 2.31 16 27 H 0.05 2.19 7.75 -2.39 -0.02 2.17 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.53 6.94 -2.38 -0.02 1.52 16 31 H 0.06 3.45 5.95 -2.39 -0.01 3.43 16 32 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.05 1.90 5.70 -2.39 -0.01 1.89 16 34 H 0.07 2.64 7.59 -2.38 -0.02 2.62 16 35 H 0.08 2.39 8.09 -2.39 -0.02 2.37 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 1.38 8.05 -2.38 -0.02 1.36 16 38 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.04 1.91 6.66 -2.39 -0.02 1.90 16 45 H 0.06 2.64 7.96 -2.39 -0.02 2.62 16 Total: -1.00 -61.63 355.90 1.97 -59.66 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.95 Total: 20.20 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 4.30 Total: -32.91 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -3.83 Total: -78.27 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.48 Total: -13.59 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -61.63 1.97 -59.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384312206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.500 kcal (2) G-P(sol) polarization free energy of solvation -61.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds