Wall clock time and date at job start Tue Mar 31 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47317 * 120.00436 * 2 1 3 5 5 C 1.53001 * 109.47366 * 59.99354 * 4 2 1 6 6 C 1.53003 * 109.46870 * 60.00540 * 5 4 2 7 7 C 1.53009 * 109.46889 * 299.99953 * 6 5 4 8 8 C 1.52995 * 109.47030 * 59.99775 * 7 6 5 9 9 H 1.08998 * 109.47034 * 60.00483 * 8 7 6 10 10 C 1.53001 * 109.46817 * 179.97438 * 8 7 6 11 11 N 1.46503 * 109.47247 * 295.00167 * 10 8 7 12 12 C 1.39783 * 120.00049 * 179.97438 * 11 10 8 13 13 C 1.38950 * 120.00328 * 359.72904 * 12 11 10 14 14 C 1.38014 * 119.99066 * 179.77175 * 13 12 11 15 15 C 1.38897 * 120.00474 * 0.49775 * 14 13 12 16 16 O 1.35794 * 119.99443 * 179.77317 * 15 14 13 17 17 C 1.34812 * 117.00349 * 174.43771 * 16 15 14 18 18 H 1.08000 * 119.99716 * 5.05228 * 17 16 15 19 19 C 1.38624 * 120.00275 * 185.05548 * 17 16 15 20 20 N 1.31583 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00085 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47317 * 89.99778 * 21 19 17 23 23 H 1.48501 * 109.47016 * 210.00147 * 21 19 17 24 24 H 1.48500 * 109.46895 * 329.99715 * 21 19 17 25 25 C 1.38901 * 120.01377 * 359.74975 * 15 14 13 26 26 C 1.38009 * 120.00527 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47288 * 299.99885 * 1 2 3 29 29 H 1.08997 * 109.47354 * 59.99726 * 1 2 3 30 30 H 1.08998 * 109.47241 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46679 * 300.00052 * 4 2 1 32 32 H 1.08997 * 109.47216 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47602 * 300.00589 * 5 4 2 34 34 H 1.08991 * 109.47276 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.46968 * 59.99660 * 6 5 4 36 36 H 1.08998 * 109.46817 * 300.00125 * 7 6 5 37 37 H 1.08999 * 109.47125 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47178 * 55.00540 * 10 8 7 39 39 H 1.09001 * 109.47152 * 175.00324 * 10 8 7 40 40 H 0.97001 * 119.99884 * 0.02562 * 11 10 8 41 41 H 1.08001 * 120.00823 * 0.02562 * 13 12 11 42 42 H 1.08000 * 119.99939 * 180.23273 * 14 13 12 43 43 H 0.97002 * 119.99902 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.99868 * 179.97438 * 25 15 14 45 45 H 1.08001 * 120.00420 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5300 -2.1638 1.2492 6 6 2.0400 -2.8851 -0.0001 7 6 1.5299 -2.1637 -1.2494 8 6 2.0399 -0.7213 -1.2493 9 1 3.1299 -0.7213 -1.2493 10 6 1.5304 -0.0002 -2.4988 11 7 2.1150 -0.6179 -3.6917 12 6 1.7951 -0.1274 -4.9609 13 6 0.9183 0.9426 -5.0916 14 6 0.6063 1.4297 -6.3446 15 6 1.1606 0.8440 -7.4754 16 8 0.8499 1.3205 -8.7085 17 6 1.5086 0.7848 -9.7556 18 1 2.1851 -0.0429 -9.6018 19 6 1.3176 1.2963 -11.0298 20 7 0.4930 2.3044 -11.2173 21 14 2.2297 0.5534 -12.4809 22 1 1.4172 -0.5420 -13.0681 23 1 2.4639 1.6009 -13.5071 24 1 3.5333 0.0110 -12.0209 25 6 2.0332 -0.2289 -7.3453 26 6 2.3500 -0.7128 -6.0923 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.1300 -0.7209 1.2494 31 1 1.6767 -0.2075 2.1391 32 1 1.8930 -2.6775 2.1393 33 1 0.4400 -2.1638 1.2492 34 1 1.6763 -3.9125 -0.0004 35 1 3.1299 -2.8850 -0.0001 36 1 0.4399 -2.1637 -1.2493 37 1 1.8928 -2.6778 -2.1394 38 1 0.4441 -0.0771 -2.5451 39 1 1.8188 1.0501 -2.4552 40 1 2.7235 -1.3679 -3.6007 41 1 0.4841 1.3956 -4.2126 42 1 -0.0723 2.2638 -6.4461 43 1 0.3597 2.6626 -12.1089 44 1 2.4638 -0.6845 -8.2248 45 1 3.0287 -1.5468 -5.9911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394774414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:17 Heat of formation + Delta-G solvation = -25.876752 kcal Electronic energy + Delta-G solvation = -22505.115910 eV Core-core repulsion = 19293.982422 eV Total energy + Delta-G solvation = -3211.133488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.87119 -38.85375 -36.92907 -34.51336 -32.38813 -32.06979 -31.10902 -30.12993 -27.86133 -26.71573 -25.53113 -24.54700 -22.47440 -22.24538 -21.19888 -20.49163 -18.69163 -17.75552 -17.05800 -16.50015 -15.63604 -15.55641 -14.89743 -14.47524 -14.36590 -14.27123 -13.81281 -13.54019 -13.47173 -13.20998 -12.92979 -12.87392 -12.64373 -12.39067 -12.09162 -11.86324 -11.76495 -11.52996 -11.43085 -11.31278 -11.20949 -11.04238 -10.82306 -10.56312 -10.42734 -10.31986 -10.22169 -10.15959 -9.19667 -9.10900 -8.39659 -8.12516 -6.34602 -6.29050 -3.86415 2.24685 2.62451 3.20368 3.21113 3.25667 3.87576 4.08640 4.37950 4.43322 4.50562 4.72741 4.90147 4.94530 5.08250 5.10161 5.11464 5.22759 5.23192 5.37110 5.43114 5.46555 5.55217 5.60664 5.69394 5.70991 5.75360 5.75442 5.83612 5.86000 5.87954 5.99909 6.02450 6.08677 6.14788 6.26307 6.29915 6.33681 6.60132 6.90836 6.95836 7.18473 7.35816 7.49597 7.69091 8.04337 8.15292 8.30544 9.16674 9.91915 10.89525 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.043344 B = 0.002618 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.838739 B =10690.754980 C =11131.949382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.091 4.091 9 H 0.072 0.928 10 C 0.138 3.862 11 N -0.759 5.759 12 C 0.126 3.874 13 C -0.146 4.146 14 C -0.150 4.150 15 C 0.112 3.888 16 O -0.189 6.189 17 C -0.386 4.386 18 H 0.088 0.912 19 C 0.035 3.965 20 N -0.870 5.870 21 Si 0.937 3.063 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.269 1.269 25 C -0.190 4.190 26 C -0.144 4.144 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.389 0.611 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.267 0.733 44 H 0.127 0.873 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -7.810 23.273 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.110 4.110 9 H 0.091 0.909 10 C 0.013 3.987 11 N -0.395 5.395 12 C 0.027 3.973 13 C -0.168 4.168 14 C -0.170 4.170 15 C 0.060 3.940 16 O -0.094 6.094 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.167 4.167 20 N -0.507 5.507 21 Si 0.763 3.237 22 H -0.201 1.201 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.209 4.209 26 C -0.166 4.166 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.222 0.778 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.144 0.856 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.564 -7.366 23.101 24.382 hybrid contribution 0.773 -0.698 -0.713 1.262 sum 3.337 -8.064 22.388 24.029 Atomic orbital electron populations 1.22012 0.95171 1.02225 1.01771 1.21042 0.96134 0.99078 0.93975 0.91099 1.21548 1.00465 0.95656 0.97397 1.21575 1.01060 0.95632 0.97637 1.21535 1.00638 0.98765 0.94743 1.21610 1.01234 0.94826 0.97579 1.21346 1.00462 0.95239 0.93935 0.90923 1.21212 0.97444 0.96147 0.83935 1.44237 1.54408 1.38829 1.02053 1.17404 0.98863 0.96439 0.84545 1.20167 1.01748 0.98561 0.96349 1.20026 1.04593 1.02370 0.90030 1.19231 0.94592 0.93188 0.86995 1.83984 1.57357 1.57779 1.10328 1.21229 1.24564 1.15960 0.84519 0.89495 1.25211 0.97382 0.96287 0.97857 1.70052 1.34419 1.23485 1.22702 0.85769 0.79306 0.78431 0.80223 1.20085 1.20427 1.19390 1.20986 1.03115 0.99785 0.97048 1.20228 1.03358 1.01698 0.91314 0.92006 0.92951 0.92206 0.92111 0.92080 0.92427 0.91683 0.92217 0.92193 0.91495 0.91846 0.92835 0.93275 0.77755 0.87238 0.86586 0.92344 0.85565 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.15 37.16 0.30 -0.89 16 2 C -0.08 -0.65 2.72 -90.62 -0.25 -0.89 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -0.78 5.45 -26.73 -0.15 -0.93 16 5 C -0.12 -0.82 5.65 -26.73 -0.15 -0.97 16 6 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 7 C -0.12 -0.97 4.80 -26.73 -0.13 -1.10 16 8 C -0.09 -0.80 2.00 -90.62 -0.18 -0.98 16 9 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 10 C 0.14 1.55 3.80 -4.04 -0.02 1.54 16 11 N -0.76 -10.30 5.46 -58.58 -0.32 -10.62 16 12 C 0.13 2.21 6.66 -83.71 -0.56 1.66 16 13 C -0.15 -2.72 9.30 -39.40 -0.37 -3.08 16 14 C -0.15 -3.29 9.98 -39.42 -0.39 -3.68 16 15 C 0.11 2.80 6.65 -39.09 -0.26 2.54 16 16 O -0.19 -5.58 9.76 -0.04 0.00 -5.58 16 17 C -0.39 -11.13 9.48 30.87 0.29 -10.83 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.00 5.49 -17.52 -0.10 0.91 16 20 N -0.87 -26.31 13.67 55.48 0.76 -25.55 16 21 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.19 -4.24 9.16 -39.42 -0.36 -4.60 16 26 C -0.14 -2.72 9.89 -39.40 -0.39 -3.11 16 27 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.50 6.55 -51.93 -0.34 0.16 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 37 H 0.06 0.58 7.18 -51.93 -0.37 0.21 16 38 H 0.05 0.63 6.50 -51.93 -0.34 0.29 16 39 H 0.05 0.59 7.96 -51.93 -0.41 0.17 16 40 H 0.39 4.68 7.67 -40.82 -0.31 4.37 16 41 H 0.11 1.75 6.73 -52.49 -0.35 1.40 16 42 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 45 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -31.12 345.51 -9.21 -40.33 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.98 Total: 5.52 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -2.86 Total: -25.45 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.44 Total: -36.17 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.12 -9.21 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394774414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.458 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds