Wall clock time and date at job start Tue Mar 31 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47317 * 120.00436 * 2 1 3 5 5 C 1.53001 * 109.47366 * 59.99354 * 4 2 1 6 6 C 1.53003 * 109.46870 * 60.00540 * 5 4 2 7 7 C 1.53009 * 109.46889 * 299.99953 * 6 5 4 8 8 C 1.52995 * 109.47030 * 59.99775 * 7 6 5 9 9 H 1.08998 * 109.47034 * 60.00483 * 8 7 6 10 10 C 1.53001 * 109.46817 * 179.97438 * 8 7 6 11 11 N 1.46503 * 109.47247 * 295.00167 * 10 8 7 12 12 C 1.39783 * 120.00049 * 179.97438 * 11 10 8 13 13 C 1.38950 * 120.00328 * 359.72904 * 12 11 10 14 14 C 1.38014 * 119.99066 * 179.77175 * 13 12 11 15 15 C 1.38897 * 120.00474 * 0.49775 * 14 13 12 16 16 O 1.35794 * 119.99443 * 179.77317 * 15 14 13 17 17 C 1.34812 * 117.00349 * 174.43771 * 16 15 14 18 18 H 1.08000 * 119.99716 * 5.05228 * 17 16 15 19 19 C 1.38624 * 120.00275 * 185.05548 * 17 16 15 20 20 N 1.31583 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00085 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47317 * 89.99778 * 21 19 17 23 23 H 1.48501 * 109.47016 * 210.00147 * 21 19 17 24 24 H 1.48500 * 109.46895 * 329.99715 * 21 19 17 25 25 C 1.38901 * 120.01377 * 359.74975 * 15 14 13 26 26 C 1.38009 * 120.00527 * 359.97438 * 25 15 14 27 27 H 1.09000 * 109.47202 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47288 * 299.99885 * 1 2 3 29 29 H 1.08997 * 109.47354 * 59.99726 * 1 2 3 30 30 H 1.08998 * 109.47241 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46679 * 300.00052 * 4 2 1 32 32 H 1.08997 * 109.47216 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47602 * 300.00589 * 5 4 2 34 34 H 1.08991 * 109.47276 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.46968 * 59.99660 * 6 5 4 36 36 H 1.08998 * 109.46817 * 300.00125 * 7 6 5 37 37 H 1.08999 * 109.47125 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47178 * 55.00540 * 10 8 7 39 39 H 1.09001 * 109.47152 * 175.00324 * 10 8 7 40 40 H 0.97001 * 119.99884 * 0.02562 * 11 10 8 41 41 H 1.08001 * 120.00823 * 0.02562 * 13 12 11 42 42 H 1.08000 * 119.99939 * 180.23273 * 14 13 12 43 43 H 0.97002 * 119.99902 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.99868 * 179.97438 * 25 15 14 45 45 H 1.08001 * 120.00420 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5300 -2.1638 1.2492 6 6 2.0400 -2.8851 -0.0001 7 6 1.5299 -2.1637 -1.2494 8 6 2.0399 -0.7213 -1.2493 9 1 3.1299 -0.7213 -1.2493 10 6 1.5304 -0.0002 -2.4988 11 7 2.1150 -0.6179 -3.6917 12 6 1.7951 -0.1274 -4.9609 13 6 0.9183 0.9426 -5.0916 14 6 0.6063 1.4297 -6.3446 15 6 1.1606 0.8440 -7.4754 16 8 0.8499 1.3205 -8.7085 17 6 1.5086 0.7848 -9.7556 18 1 2.1851 -0.0429 -9.6018 19 6 1.3176 1.2963 -11.0298 20 7 0.4930 2.3044 -11.2173 21 14 2.2297 0.5534 -12.4809 22 1 1.4172 -0.5420 -13.0681 23 1 2.4639 1.6009 -13.5071 24 1 3.5333 0.0110 -12.0209 25 6 2.0332 -0.2289 -7.3453 26 6 2.3500 -0.7128 -6.0923 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.1300 -0.7209 1.2494 31 1 1.6767 -0.2075 2.1391 32 1 1.8930 -2.6775 2.1393 33 1 0.4400 -2.1638 1.2492 34 1 1.6763 -3.9125 -0.0004 35 1 3.1299 -2.8850 -0.0001 36 1 0.4399 -2.1637 -1.2493 37 1 1.8928 -2.6778 -2.1394 38 1 0.4441 -0.0771 -2.5451 39 1 1.8188 1.0501 -2.4552 40 1 2.7235 -1.3679 -3.6007 41 1 0.4841 1.3956 -4.2126 42 1 -0.0723 2.2638 -6.4461 43 1 0.3597 2.6626 -12.1089 44 1 2.4638 -0.6845 -8.2248 45 1 3.0287 -1.5468 -5.9911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394774414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:16 Heat of formation + Delta-G solvation = -43.270414 kcal Electronic energy + Delta-G solvation = -22505.870156 eV Core-core repulsion = 19293.982422 eV Total energy + Delta-G solvation = -3211.887734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85056 -40.31651 -38.56790 -35.81677 -34.12802 -32.99436 -32.11940 -31.72309 -29.05361 -27.79329 -27.11717 -25.83818 -23.68851 -23.14527 -22.40868 -21.80978 -19.66101 -19.35010 -18.81989 -17.79363 -16.78684 -16.47601 -16.21364 -15.90511 -15.47699 -15.41539 -15.25138 -14.91114 -14.79195 -14.37559 -14.11985 -14.05415 -13.68789 -13.55328 -13.40609 -13.12185 -12.96517 -12.73673 -12.60271 -12.37997 -12.25921 -12.22376 -12.09144 -11.89937 -11.69890 -11.10299 -11.04569 -10.92351 -10.85169 -10.76786 -10.13950 -9.76654 -8.38732 -7.90999 -6.02282 0.59343 0.94626 1.36856 1.46840 1.54418 2.23191 2.69485 2.92263 3.26435 3.67687 3.72417 3.80163 3.85019 4.13892 4.19111 4.25645 4.33279 4.39204 4.49084 4.50878 4.56709 4.58600 4.69377 4.73900 4.80248 4.84575 4.90520 4.96995 5.03973 5.10963 5.13844 5.17065 5.24076 5.29005 5.30175 5.33900 5.41656 5.48431 5.49636 5.53813 5.56288 5.70878 5.79385 6.00531 6.12202 6.64091 7.05448 7.08342 7.94355 8.85924 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.043344 B = 0.002618 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.838739 B =10690.754980 C =11131.949382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.082 4.082 9 H 0.075 0.925 10 C 0.133 3.867 11 N -0.744 5.744 12 C 0.153 3.847 13 C -0.146 4.146 14 C -0.156 4.156 15 C 0.061 3.939 16 O -0.243 6.243 17 C -0.406 4.406 18 H 0.098 0.902 19 C -0.029 4.029 20 N -0.927 5.927 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.193 4.193 26 C -0.147 4.147 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.401 0.599 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.270 0.730 44 H 0.119 0.881 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.374 -9.620 25.796 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.101 4.101 9 H 0.094 0.906 10 C 0.009 3.991 11 N -0.379 5.379 12 C 0.052 3.948 13 C -0.169 4.169 14 C -0.175 4.175 15 C 0.012 3.988 16 O -0.151 6.151 17 C -0.482 4.482 18 H 0.115 0.885 19 C -0.225 4.225 20 N -0.567 5.567 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.212 4.212 26 C -0.169 4.169 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.237 0.763 41 H 0.157 0.843 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.137 0.863 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.041 -9.216 25.724 27.622 hybrid contribution 0.325 -0.207 -1.087 1.153 sum 4.366 -9.423 24.636 26.736 Atomic orbital electron populations 1.22007 0.95162 1.02229 1.01747 1.21036 0.96098 0.99086 0.93856 0.91084 1.21532 1.00561 0.95643 0.97097 1.21574 1.01009 0.95555 0.97691 1.21514 1.00749 0.98857 0.94333 1.21593 1.00915 0.94599 0.98038 1.21271 1.00505 0.95242 0.93035 0.90643 1.21402 0.97455 0.96381 0.83885 1.44349 1.53752 1.38616 1.01177 1.17542 0.96492 0.94789 0.85984 1.20416 1.01779 0.98779 0.95894 1.20230 1.04339 1.02346 0.90629 1.19723 0.97323 0.95341 0.86455 1.83932 1.59460 1.59829 1.11889 1.21755 1.24843 1.16441 0.85193 0.88464 1.26539 0.98330 0.96749 1.00928 1.70209 1.37041 1.25871 1.23612 0.84606 0.78310 0.77726 0.75669 1.18921 1.19750 1.17748 1.21053 1.02581 0.99161 0.98443 1.20495 1.03741 1.02484 0.90174 0.91986 0.92231 0.93033 0.91929 0.91375 0.91625 0.91787 0.91901 0.91956 0.92000 0.92398 0.92801 0.93256 0.76316 0.84265 0.86988 0.92161 0.86343 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.15 71.98 0.59 -1.42 16 2 C -0.08 -1.04 2.72 -10.79 -0.03 -1.07 16 3 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.20 5.45 30.59 0.17 -1.03 16 5 C -0.12 -1.29 5.65 30.60 0.17 -1.12 16 6 C -0.12 -1.38 5.92 30.60 0.18 -1.19 16 7 C -0.11 -1.61 4.80 30.60 0.15 -1.46 16 8 C -0.08 -1.18 2.00 -10.80 -0.02 -1.20 16 9 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 10 C 0.13 2.58 3.80 86.38 0.33 2.91 16 11 N -0.74 -17.55 5.46 -339.25 -1.85 -19.41 16 12 C 0.15 4.99 6.66 38.21 0.25 5.25 16 13 C -0.15 -5.21 9.30 22.39 0.21 -5.00 16 14 C -0.16 -6.95 9.98 22.37 0.22 -6.72 16 15 C 0.06 3.17 6.65 22.59 0.15 3.32 16 16 O -0.24 -15.21 9.76 -23.04 -0.22 -15.43 16 17 C -0.41 -24.48 9.48 67.91 0.64 -23.83 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.03 -1.73 5.49 84.82 0.47 -1.27 16 20 N -0.93 -58.88 13.67 21.61 0.30 -58.59 16 21 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 25 C -0.19 -8.70 9.16 22.37 0.20 -8.50 16 26 C -0.15 -5.24 9.89 22.39 0.22 -5.02 16 27 H 0.06 0.81 4.81 -2.39 -0.01 0.79 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.75 6.55 -2.39 -0.02 0.73 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.95 6.43 -2.39 -0.02 0.94 16 37 H 0.06 0.88 7.18 -2.39 -0.02 0.86 16 38 H 0.05 1.10 6.50 -2.39 -0.02 1.09 16 39 H 0.05 1.01 7.96 -2.39 -0.02 0.99 16 40 H 0.40 8.01 7.67 -92.71 -0.71 7.30 16 41 H 0.14 4.09 6.73 -2.91 -0.02 4.07 16 42 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.12 5.42 5.63 -2.91 -0.02 5.41 16 45 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -71.36 345.51 4.42 -66.94 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.28 Total: 27.46 kcal Atomic # 6 Polarization: -51.25 SS G_CDS: 3.90 Total: -47.35 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.56 Total: -77.99 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.22 Total: -15.43 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.36 4.42 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394774414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.668 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds