Wall clock time and date at job start Tue Mar 31 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47302 * 2 1 4 4 C 1.52993 * 109.47582 * 239.99387 * 2 1 3 5 5 C 1.53000 * 109.47582 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46711 * 59.99876 * 5 4 2 7 7 C 1.52991 * 109.47381 * 300.00023 * 6 5 4 8 8 C 1.53000 * 109.47217 * 60.00287 * 7 6 5 9 9 H 1.09002 * 109.47403 * 59.99920 * 8 7 6 10 10 C 1.53002 * 109.47501 * 179.97438 * 8 7 6 11 11 N 1.46495 * 109.46938 * 295.00233 * 10 8 7 12 12 C 1.39790 * 119.99979 * 179.97438 * 11 10 8 13 13 C 1.38944 * 120.00894 * 179.97438 * 12 11 10 14 14 C 1.38005 * 119.99573 * 179.97438 * 13 12 11 15 15 C 1.38894 * 120.00944 * 0.02562 * 14 13 12 16 16 O 1.35793 * 120.00058 * 179.97438 * 15 14 13 17 17 C 1.34809 * 116.99860 * 5.54403 * 16 15 14 18 18 H 1.08009 * 119.99794 * 354.94091 * 17 16 15 19 19 C 1.38620 * 120.00289 * 174.93850 * 17 16 15 20 20 N 1.31584 * 120.00068 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46930 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47162 * 60.00080 * 21 19 17 24 24 H 1.48505 * 109.46957 * 300.00039 * 21 19 17 25 25 C 1.38908 * 120.01060 * 0.27226 * 15 14 13 26 26 C 1.38013 * 119.99927 * 359.45020 * 25 15 14 27 27 H 1.09000 * 109.47421 * 300.00941 * 1 2 3 28 28 H 1.09004 * 109.46540 * 60.00525 * 1 2 3 29 29 H 1.08998 * 109.46921 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47176 * 59.99671 * 4 2 1 31 31 H 1.09002 * 109.46816 * 300.00439 * 4 2 1 32 32 H 1.08998 * 109.46921 * 300.00025 * 5 4 2 33 33 H 1.08996 * 109.46937 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.46766 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47307 * 60.00385 * 6 5 4 36 36 H 1.09000 * 109.47682 * 300.00256 * 7 6 5 37 37 H 1.08998 * 109.47554 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47421 * 174.99957 * 10 8 7 39 39 H 1.09004 * 109.46522 * 54.99990 * 10 8 7 40 40 H 0.96996 * 120.00587 * 359.97438 * 11 10 8 41 41 H 1.08006 * 120.00003 * 0.02562 * 13 12 11 42 42 H 1.07999 * 119.99655 * 180.02562 * 14 13 12 43 43 H 0.96998 * 119.99462 * 359.97438 * 20 19 17 44 44 H 1.07996 * 120.00241 * 179.70779 * 25 15 14 45 45 H 1.08001 * 120.00080 * 180.29660 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7208 -1.2494 6 6 4.0805 -1.4415 0.0000 7 6 3.5705 -0.7202 1.2491 8 6 2.0405 -0.7207 1.2494 9 1 1.6775 -1.7485 1.2497 10 6 1.5304 0.0001 2.4989 11 7 1.9185 -0.7566 3.6917 12 6 1.5627 -0.2913 4.9610 13 6 1.9302 -1.0091 6.0925 14 6 1.5792 -0.5493 7.3454 15 6 0.8582 0.6307 7.4755 16 8 0.5125 1.0827 8.7084 17 6 0.9968 0.4034 9.7673 18 1 1.5610 -0.5048 9.6141 19 6 0.7707 0.8704 11.0528 20 7 0.0830 1.9765 11.2395 21 14 1.4425 -0.0706 12.5200 22 1 1.0656 0.6316 13.7730 23 1 2.9221 -0.1496 12.4221 24 1 0.8732 -1.4421 12.5313 25 6 0.4852 1.3453 6.3442 26 6 0.8409 0.8889 5.0913 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6768 -0.2076 -2.1391 31 1 1.6767 -1.7490 -1.2490 32 1 3.9330 0.3070 -1.2497 33 1 3.9334 -1.2343 -2.1395 34 1 5.1706 -1.4415 -0.0005 35 1 3.7176 -2.4693 0.0003 36 1 3.9334 0.3076 1.2488 37 1 3.9345 -1.2333 2.1391 38 1 0.4441 0.0779 2.4554 39 1 1.9647 0.9988 2.5448 40 1 2.4224 -1.5804 3.6009 41 1 2.4913 -1.9264 5.9914 42 1 1.8653 -1.1069 8.2249 43 1 -0.2655 2.4653 10.4776 44 1 -0.0795 2.2603 6.4453 45 1 0.5551 1.4470 4.2120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394774420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:19 Heat of formation + Delta-G solvation = -35.940417 kcal Electronic energy + Delta-G solvation = -22458.053286 eV Core-core repulsion = 19246.483405 eV Total energy + Delta-G solvation = -3211.569881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.68567 -38.90406 -37.02704 -34.59031 -32.98752 -32.10646 -31.11749 -30.20400 -27.74043 -26.49008 -25.36181 -24.38019 -22.31253 -21.83036 -21.05354 -20.57889 -19.97186 -18.16318 -17.05762 -16.36766 -15.44905 -15.13609 -15.03852 -14.62028 -14.49402 -14.25206 -13.98604 -13.66404 -13.54989 -13.44842 -13.04565 -12.76116 -12.50105 -12.45935 -12.22943 -12.01373 -11.78815 -11.54126 -11.45437 -11.17197 -11.13435 -10.86668 -10.81172 -10.67268 -10.26893 -10.23258 -10.19160 -10.16234 -9.26898 -9.13616 -8.38437 -8.19985 -6.62592 -6.41134 -3.89151 2.17015 2.55387 3.29972 3.35416 3.51738 3.82204 4.22999 4.34378 4.40681 4.47248 4.67717 4.80496 4.86266 5.04423 5.12445 5.18452 5.19817 5.23707 5.28264 5.34649 5.41268 5.51492 5.57373 5.62807 5.65080 5.72381 5.73488 5.76317 5.80824 5.87687 5.94265 5.97072 6.05964 6.12131 6.17963 6.22855 6.27639 6.51958 6.83214 6.90027 7.09402 7.38574 7.50814 7.69491 7.96716 8.23616 8.56258 9.09011 9.81394 10.82576 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039048 B = 0.002645 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.887241 B =10583.484056 C =11068.987488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.091 4.091 9 H 0.073 0.927 10 C 0.136 3.864 11 N -0.758 5.758 12 C 0.128 3.872 13 C -0.144 4.144 14 C -0.185 4.185 15 C 0.115 3.885 16 O -0.213 6.213 17 C -0.468 4.468 18 H 0.079 0.921 19 C 0.006 3.994 20 N -0.890 5.890 21 Si 1.095 2.905 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.153 4.153 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.389 0.611 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.280 0.720 44 H 0.114 0.886 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -6.337 -23.926 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.110 4.110 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.394 5.394 12 C 0.030 3.970 13 C -0.166 4.166 14 C -0.205 4.205 15 C 0.063 3.937 16 O -0.120 6.120 17 C -0.545 4.545 18 H 0.097 0.903 19 C -0.198 4.198 20 N -0.523 5.523 21 Si 0.919 3.081 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.173 4.173 26 C -0.168 4.168 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.223 0.777 41 H 0.124 0.876 42 H 0.146 0.854 43 H 0.090 0.910 44 H 0.133 0.867 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.210 -5.973 -22.245 23.615 hybrid contribution 0.214 -0.469 -1.817 1.889 sum 5.424 -6.442 -24.063 25.494 Atomic orbital electron populations 1.21932 0.95123 1.01994 1.01949 1.21079 0.95546 0.99623 0.93977 0.91029 1.21581 0.95431 1.00663 0.97359 1.21541 0.95739 1.00771 0.97724 1.21539 1.00119 0.99377 0.94690 1.21576 0.94797 1.01078 0.97673 1.21377 0.95644 1.00044 0.93899 0.90832 1.21252 0.98863 0.94889 0.83927 1.44238 1.64943 1.28235 1.02023 1.17411 0.99913 0.95117 0.84595 1.20247 1.04785 1.00296 0.91260 1.20998 1.04139 0.98243 0.97111 1.19080 0.95236 0.92980 0.86387 1.83669 1.64988 1.52599 1.10697 1.22096 1.38178 1.09212 0.84975 0.90339 1.26425 0.97095 0.97928 0.98370 1.70577 1.31568 1.14713 1.35478 0.83121 0.75850 0.74649 0.74435 1.19925 1.20929 1.20922 1.20006 1.05959 1.01122 0.90181 1.20154 1.03603 0.96791 0.96295 0.92002 0.92766 0.92681 0.92053 0.92033 0.92040 0.92263 0.92153 0.92132 0.91851 0.91738 0.92708 0.93242 0.77700 0.87599 0.85438 0.90976 0.86746 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.85 37.16 0.33 -0.85 16 2 C -0.08 -0.64 2.25 -90.62 -0.20 -0.85 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.77 5.20 -26.73 -0.14 -0.91 16 5 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 6 C -0.12 -0.87 5.92 -26.74 -0.16 -1.03 16 7 C -0.11 -0.97 5.08 -26.74 -0.14 -1.10 16 8 C -0.09 -0.79 1.75 -90.62 -0.16 -0.95 16 9 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 10 C 0.14 1.52 4.09 -4.04 -0.02 1.51 16 11 N -0.76 -10.24 5.46 -58.58 -0.32 -10.56 16 12 C 0.13 2.25 6.66 -83.70 -0.56 1.69 16 13 C -0.14 -2.72 9.89 -39.41 -0.39 -3.11 16 14 C -0.19 -4.19 9.16 -39.42 -0.36 -4.55 16 15 C 0.12 2.88 6.65 -39.09 -0.26 2.62 16 16 O -0.21 -6.23 9.16 -0.02 0.00 -6.23 16 17 C -0.47 -13.63 9.48 30.87 0.29 -13.33 16 18 H 0.08 2.15 5.20 -52.48 -0.27 1.88 16 19 C 0.01 0.17 5.49 -17.52 -0.10 0.07 16 20 N -0.89 -27.43 13.70 55.48 0.76 -26.67 16 21 Si 1.09 24.48 29.92 -169.99 -5.09 19.40 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 C -0.15 -3.32 9.99 -39.42 -0.39 -3.71 16 26 C -0.15 -2.71 9.30 -39.40 -0.37 -3.07 16 27 H 0.06 0.52 6.32 -51.93 -0.33 0.19 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.59 7.18 -51.93 -0.37 0.21 16 38 H 0.05 0.64 5.98 -51.93 -0.31 0.33 16 39 H 0.05 0.59 7.95 -51.93 -0.41 0.18 16 40 H 0.39 4.66 7.67 -40.82 -0.31 4.35 16 41 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.13 2.92 5.63 -52.49 -0.30 2.63 16 43 H 0.28 8.84 7.97 -40.82 -0.33 8.52 16 44 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 45 H 0.11 1.75 6.73 -52.49 -0.35 1.40 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -31.38 351.54 -9.40 -40.78 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.28 Total: 6.54 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -2.77 Total: -28.55 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.44 Total: -37.22 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: 0.00 Total: -6.23 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.09 Total: 19.40 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.38 -9.40 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394774420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.839 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds