Wall clock time and date at job start Tue Mar 31 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47302 * 2 1 4 4 C 1.52993 * 109.47582 * 239.99387 * 2 1 3 5 5 C 1.53000 * 109.47582 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46711 * 59.99876 * 5 4 2 7 7 C 1.52991 * 109.47381 * 300.00023 * 6 5 4 8 8 C 1.53000 * 109.47217 * 60.00287 * 7 6 5 9 9 H 1.09002 * 109.47403 * 59.99920 * 8 7 6 10 10 C 1.53002 * 109.47501 * 179.97438 * 8 7 6 11 11 N 1.46495 * 109.46938 * 295.00233 * 10 8 7 12 12 C 1.39790 * 119.99979 * 179.97438 * 11 10 8 13 13 C 1.38944 * 120.00894 * 179.97438 * 12 11 10 14 14 C 1.38005 * 119.99573 * 179.97438 * 13 12 11 15 15 C 1.38894 * 120.00944 * 0.02562 * 14 13 12 16 16 O 1.35793 * 120.00058 * 179.97438 * 15 14 13 17 17 C 1.34809 * 116.99860 * 5.54403 * 16 15 14 18 18 H 1.08009 * 119.99794 * 354.94091 * 17 16 15 19 19 C 1.38620 * 120.00289 * 174.93850 * 17 16 15 20 20 N 1.31584 * 120.00068 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46930 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47162 * 60.00080 * 21 19 17 24 24 H 1.48505 * 109.46957 * 300.00039 * 21 19 17 25 25 C 1.38908 * 120.01060 * 0.27226 * 15 14 13 26 26 C 1.38013 * 119.99927 * 359.45020 * 25 15 14 27 27 H 1.09000 * 109.47421 * 300.00941 * 1 2 3 28 28 H 1.09004 * 109.46540 * 60.00525 * 1 2 3 29 29 H 1.08998 * 109.46921 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47176 * 59.99671 * 4 2 1 31 31 H 1.09002 * 109.46816 * 300.00439 * 4 2 1 32 32 H 1.08998 * 109.46921 * 300.00025 * 5 4 2 33 33 H 1.08996 * 109.46937 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.46766 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47307 * 60.00385 * 6 5 4 36 36 H 1.09000 * 109.47682 * 300.00256 * 7 6 5 37 37 H 1.08998 * 109.47554 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47421 * 174.99957 * 10 8 7 39 39 H 1.09004 * 109.46522 * 54.99990 * 10 8 7 40 40 H 0.96996 * 120.00587 * 359.97438 * 11 10 8 41 41 H 1.08006 * 120.00003 * 0.02562 * 13 12 11 42 42 H 1.07999 * 119.99655 * 180.02562 * 14 13 12 43 43 H 0.96998 * 119.99462 * 359.97438 * 20 19 17 44 44 H 1.07996 * 120.00241 * 179.70779 * 25 15 14 45 45 H 1.08001 * 120.00080 * 180.29660 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7208 -1.2494 6 6 4.0805 -1.4415 0.0000 7 6 3.5705 -0.7202 1.2491 8 6 2.0405 -0.7207 1.2494 9 1 1.6775 -1.7485 1.2497 10 6 1.5304 0.0001 2.4989 11 7 1.9185 -0.7566 3.6917 12 6 1.5627 -0.2913 4.9610 13 6 1.9302 -1.0091 6.0925 14 6 1.5792 -0.5493 7.3454 15 6 0.8582 0.6307 7.4755 16 8 0.5125 1.0827 8.7084 17 6 0.9968 0.4034 9.7673 18 1 1.5610 -0.5048 9.6141 19 6 0.7707 0.8704 11.0528 20 7 0.0830 1.9765 11.2395 21 14 1.4425 -0.0706 12.5200 22 1 1.0656 0.6316 13.7730 23 1 2.9221 -0.1496 12.4221 24 1 0.8732 -1.4421 12.5313 25 6 0.4852 1.3453 6.3442 26 6 0.8409 0.8889 5.0913 27 1 -0.3634 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6768 -0.2076 -2.1391 31 1 1.6767 -1.7490 -1.2490 32 1 3.9330 0.3070 -1.2497 33 1 3.9334 -1.2343 -2.1395 34 1 5.1706 -1.4415 -0.0005 35 1 3.7176 -2.4693 0.0003 36 1 3.9334 0.3076 1.2488 37 1 3.9345 -1.2333 2.1391 38 1 0.4441 0.0779 2.4554 39 1 1.9647 0.9988 2.5448 40 1 2.4224 -1.5804 3.6009 41 1 2.4913 -1.9264 5.9914 42 1 1.8653 -1.1069 8.2249 43 1 -0.2655 2.4653 10.4776 44 1 -0.0795 2.2603 6.4453 45 1 0.5551 1.4470 4.2120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394774420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:18 Heat of formation + Delta-G solvation = -53.311697 kcal Electronic energy + Delta-G solvation = -22458.806561 eV Core-core repulsion = 19246.483405 eV Total energy + Delta-G solvation = -3212.323156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89682 -40.18836 -38.66234 -35.88616 -34.14632 -33.59477 -32.18187 -31.79900 -28.99616 -27.47669 -26.83620 -25.82972 -23.71869 -22.88650 -22.14355 -21.71341 -20.64233 -20.06281 -18.77680 -17.80402 -17.02310 -16.05197 -15.90217 -15.85288 -15.63639 -15.49230 -15.30516 -15.20556 -14.92822 -14.61855 -14.21521 -14.09856 -13.86842 -13.36598 -13.26538 -12.88557 -12.72765 -12.68160 -12.58913 -12.43834 -12.35665 -12.08032 -11.91807 -11.88420 -11.73658 -11.31735 -11.20066 -10.96144 -10.87177 -10.76883 -10.19475 -9.84723 -8.86742 -7.98777 -6.11872 0.51230 0.86797 1.49999 1.63385 1.80469 2.41222 2.63650 2.91365 3.20139 3.49217 3.68195 3.76512 3.82086 4.05925 4.11419 4.15370 4.26381 4.38298 4.48092 4.50458 4.54531 4.59330 4.61918 4.64536 4.74932 4.81697 4.88476 4.91609 4.97476 5.08507 5.12992 5.15390 5.21400 5.22122 5.29361 5.32885 5.38085 5.44796 5.46116 5.48401 5.49785 5.64073 5.76990 5.88992 6.30631 6.58766 6.96448 7.01136 7.77654 8.59415 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.039048 B = 0.002645 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.887241 B =10583.484056 C =11068.987488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.113 4.113 8 C -0.081 4.081 9 H 0.076 0.924 10 C 0.130 3.870 11 N -0.743 5.743 12 C 0.157 3.843 13 C -0.147 4.147 14 C -0.190 4.190 15 C 0.062 3.938 16 O -0.263 6.263 17 C -0.481 4.481 18 H 0.087 0.913 19 C -0.051 4.051 20 N -0.925 5.925 21 Si 1.145 2.855 22 H -0.275 1.275 23 H -0.261 1.261 24 H -0.261 1.261 25 C -0.155 4.155 26 C -0.147 4.147 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.402 0.598 41 H 0.140 0.860 42 H 0.117 0.883 43 H 0.258 0.742 44 H 0.114 0.886 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 -8.253 -26.775 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.088 0.912 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.100 4.100 9 H 0.094 0.906 10 C 0.006 3.994 11 N -0.377 5.377 12 C 0.056 3.944 13 C -0.169 4.169 14 C -0.210 4.210 15 C 0.013 3.987 16 O -0.172 6.172 17 C -0.558 4.558 18 H 0.105 0.895 19 C -0.246 4.246 20 N -0.561 5.561 21 Si 0.961 3.039 22 H -0.199 1.199 23 H -0.186 1.186 24 H -0.185 1.185 25 C -0.175 4.175 26 C -0.169 4.169 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.237 0.763 41 H 0.158 0.842 42 H 0.135 0.865 43 H 0.066 0.934 44 H 0.132 0.868 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.553 -7.927 -25.209 27.226 hybrid contribution -0.141 0.065 -1.382 1.391 sum 6.411 -7.862 -26.591 28.460 Atomic orbital electron populations 1.21928 0.95044 1.02018 1.01991 1.21059 0.95549 0.99495 0.93860 0.91231 1.21561 0.95455 1.00676 0.97074 1.21543 0.95644 1.00724 0.97817 1.21520 1.00344 0.99382 0.94263 1.21564 0.94491 1.00832 0.98175 1.21300 0.95781 0.99896 0.93022 0.90559 1.21454 0.99147 0.94928 0.83833 1.44359 1.63692 1.28549 1.01142 1.17553 0.97067 0.93822 0.86003 1.20506 1.04790 1.01544 0.90095 1.21064 1.03934 0.97490 0.98482 1.19607 0.98155 0.95051 0.85890 1.83632 1.67350 1.54146 1.12057 1.22515 1.37964 1.09567 0.85717 0.89509 1.28337 0.96583 0.98013 1.01663 1.70719 1.34651 1.16591 1.34127 0.82584 0.76521 0.74217 0.70572 1.19929 1.18593 1.18526 1.20239 1.05579 1.00999 0.90636 1.20430 1.03206 0.97355 0.95913 0.92792 0.91966 0.92642 0.91318 0.91887 0.92224 0.91389 0.91846 0.91836 0.92471 0.92245 0.92448 0.93307 0.76253 0.84242 0.86492 0.93392 0.86804 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.85 71.98 0.64 -1.30 16 2 C -0.08 -1.01 2.25 -10.79 -0.02 -1.03 16 3 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.17 5.20 30.59 0.16 -1.01 16 5 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 6 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 7 C -0.11 -1.59 5.08 30.59 0.16 -1.43 16 8 C -0.08 -1.16 1.75 -10.79 -0.02 -1.18 16 9 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 10 C 0.13 2.49 4.09 86.38 0.35 2.84 16 11 N -0.74 -17.27 5.46 -339.26 -1.85 -19.12 16 12 C 0.16 5.07 6.66 38.21 0.25 5.32 16 13 C -0.15 -5.25 9.89 22.38 0.22 -5.03 16 14 C -0.19 -8.65 9.16 22.37 0.20 -8.44 16 15 C 0.06 3.21 6.65 22.59 0.15 3.36 16 16 O -0.26 -16.27 9.16 -23.00 -0.21 -16.48 16 17 C -0.48 -29.26 9.48 67.91 0.64 -28.61 16 18 H 0.09 4.91 5.20 -2.91 -0.02 4.90 16 19 C -0.05 -3.06 5.49 84.82 0.47 -2.59 16 20 N -0.92 -59.93 13.70 21.61 0.30 -59.63 16 21 Si 1.15 49.85 29.92 68.60 2.05 51.90 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 C -0.15 -6.80 9.99 22.38 0.22 -6.58 16 26 C -0.15 -5.14 9.30 22.39 0.21 -4.93 16 27 H 0.05 0.76 6.32 -2.39 -0.02 0.75 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.89 7.18 -2.39 -0.02 0.88 16 38 H 0.06 1.13 5.98 -2.39 -0.01 1.12 16 39 H 0.05 0.99 7.95 -2.38 -0.02 0.98 16 40 H 0.40 7.90 7.67 -92.71 -0.71 7.19 16 41 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 42 H 0.12 5.47 5.63 -2.91 -0.02 5.45 16 43 H 0.26 17.43 7.97 -92.71 -0.74 16.69 16 44 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.14 4.06 6.73 -2.91 -0.02 4.04 16 Total: -1.00 -72.12 351.54 4.57 -67.55 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.29 Total: 28.68 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 4.00 Total: -52.89 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -1.56 Total: -78.76 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.21 Total: -16.48 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -72.12 4.57 -67.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394774420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.234 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds