Wall clock time and date at job start Tue Mar 31 2020 06:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47596 * 2 1 4 4 C 1.53004 * 109.46926 * 240.00271 * 2 1 3 5 5 C 1.53003 * 109.47045 * 300.00228 * 4 2 1 6 6 C 1.53005 * 109.46689 * 299.99892 * 5 4 2 7 7 C 1.52996 * 109.47070 * 60.00254 * 6 5 4 8 8 C 1.52997 * 109.47446 * 120.00249 * 2 1 3 9 9 H 1.09002 * 109.47228 * 179.97438 * 8 2 1 10 10 C 1.52999 * 109.47324 * 300.00157 * 8 2 1 11 11 N 1.46500 * 109.47353 * 184.99818 * 10 8 2 12 12 C 1.39783 * 119.99927 * 179.97438 * 11 10 8 13 13 C 1.38951 * 120.00582 * 359.72674 * 12 11 10 14 14 C 1.38016 * 119.99083 * 179.71425 * 13 12 11 15 15 C 1.38893 * 120.00401 * 0.56195 * 14 13 12 16 16 O 1.35797 * 119.99282 * 179.69680 * 15 14 13 17 17 C 1.34812 * 117.00372 * 174.47834 * 16 15 14 18 18 H 1.07999 * 119.99587 * 5.05918 * 17 16 15 19 19 C 1.38620 * 120.00255 * 185.05721 * 17 16 15 20 20 N 1.31578 * 119.99905 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99688 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47288 * 60.00294 * 21 19 17 23 23 H 1.48502 * 109.46690 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47165 * 299.99991 * 21 19 17 25 25 C 1.38901 * 120.01493 * 359.71280 * 15 14 13 26 26 C 1.38010 * 120.00308 * 0.02562 * 25 15 14 27 27 H 1.09000 * 109.46450 * 299.99595 * 1 2 3 28 28 H 1.08992 * 109.47067 * 59.99495 * 1 2 3 29 29 H 1.08994 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47110 * 59.99773 * 4 2 1 31 31 H 1.09002 * 109.47000 * 180.02562 * 4 2 1 32 32 H 1.08995 * 109.47080 * 180.02562 * 5 4 2 33 33 H 1.08992 * 109.47134 * 59.99635 * 5 4 2 34 34 H 1.09002 * 109.47120 * 299.99752 * 6 5 4 35 35 H 1.09003 * 109.47152 * 180.02562 * 6 5 4 36 36 H 1.08992 * 109.47292 * 60.00243 * 7 6 5 37 37 H 1.09004 * 109.46891 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.46794 * 304.99587 * 10 8 2 39 39 H 1.08998 * 109.47308 * 64.99513 * 10 8 2 40 40 H 0.96998 * 119.99598 * 0.02562 * 11 10 8 41 41 H 1.07997 * 120.00408 * 359.97438 * 13 12 11 42 42 H 1.07997 * 119.99485 * 180.25371 * 14 13 12 43 43 H 0.96999 * 120.00135 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.99835 * 180.02562 * 25 15 14 45 45 H 1.08008 * 119.99581 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1638 1.2491 8 6 2.0401 -0.7213 1.2492 9 1 3.1301 -0.7217 1.2489 10 6 1.5301 -0.0002 2.4985 11 7 2.1143 -0.6178 3.6916 12 6 1.7948 -0.1265 4.9606 13 6 0.9275 0.9514 5.0903 14 6 0.6076 1.4325 6.3437 15 6 1.1616 0.8468 7.4747 16 8 0.8514 1.3243 8.7075 17 6 1.3305 0.6417 9.7667 18 1 1.9981 -0.1934 9.6138 19 6 0.9664 1.0116 11.0521 20 7 0.1527 2.0287 11.2383 21 14 1.6309 0.0660 12.5196 22 1 3.1137 0.1460 12.5299 23 1 1.0942 0.6556 13.7725 24 1 1.2125 -1.3556 12.4233 25 6 2.0330 -0.2270 7.3450 26 6 2.3490 -0.7119 6.0922 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6766 -0.2073 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 1.8936 -2.6776 -2.1391 33 1 0.4400 -2.1637 -1.2493 34 1 3.1300 -2.8850 -0.0002 35 1 1.6770 -3.9128 -0.0003 36 1 0.4401 -2.1638 1.2492 37 1 1.8930 -2.6779 2.1391 38 1 1.8185 1.0501 2.4549 39 1 0.4438 -0.0770 2.5444 40 1 2.7234 -1.3672 3.6008 41 1 0.5005 1.4099 4.2106 42 1 -0.0697 2.2676 6.4447 43 1 -0.1019 2.2877 12.1378 44 1 2.4633 -0.6825 8.2247 45 1 3.0263 -1.5472 5.9915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394774424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:23 Heat of formation + Delta-G solvation = -25.792837 kcal Electronic energy + Delta-G solvation = -22507.506338 eV Core-core repulsion = 19296.376489 eV Total energy + Delta-G solvation = -3211.129849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87071 -38.85296 -36.92812 -34.51282 -32.38767 -32.06963 -31.10819 -30.12930 -27.86019 -26.71527 -25.52991 -24.54571 -22.47304 -22.24460 -21.19774 -20.49100 -18.69100 -17.75408 -17.05698 -16.49880 -15.63484 -15.55368 -14.89778 -14.47643 -14.36881 -14.27186 -13.82308 -13.53272 -13.45233 -13.21839 -12.93440 -12.87932 -12.63141 -12.38873 -12.09672 -11.85237 -11.76402 -11.52573 -11.44229 -11.31100 -11.20286 -11.03292 -10.80937 -10.58443 -10.43412 -10.32675 -10.21906 -10.15594 -9.19696 -9.10871 -8.39430 -8.12455 -6.34529 -6.28821 -3.86269 2.24735 2.62621 3.20628 3.21957 3.24312 3.87653 4.08809 4.37997 4.43385 4.50682 4.72809 4.90238 4.94623 5.08327 5.10269 5.11523 5.22640 5.23546 5.37115 5.43190 5.46636 5.55450 5.60744 5.69455 5.71064 5.75333 5.75473 5.83699 5.86128 5.88013 5.99994 6.02570 6.08792 6.14839 6.26301 6.29967 6.33809 6.60182 6.90861 6.95850 7.18538 7.35558 7.49647 7.69156 8.04402 8.15420 8.30621 9.16779 9.91976 10.89716 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.042062 B = 0.002628 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.520015 B =10653.395307 C =11090.596951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.091 4.091 9 H 0.072 0.928 10 C 0.138 3.862 11 N -0.759 5.759 12 C 0.126 3.874 13 C -0.146 4.146 14 C -0.150 4.150 15 C 0.112 3.888 16 O -0.189 6.189 17 C -0.386 4.386 18 H 0.087 0.913 19 C 0.036 3.964 20 N -0.870 5.870 21 Si 0.937 3.063 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.272 1.272 25 C -0.190 4.190 26 C -0.144 4.144 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.389 0.611 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.267 0.733 44 H 0.127 0.873 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -7.437 -23.278 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.110 4.110 9 H 0.091 0.909 10 C 0.013 3.987 11 N -0.395 5.395 12 C 0.027 3.973 13 C -0.168 4.168 14 C -0.170 4.170 15 C 0.060 3.940 16 O -0.094 6.094 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.167 4.167 20 N -0.507 5.507 21 Si 0.763 3.237 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.197 1.197 25 C -0.209 4.209 26 C -0.166 4.166 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.222 0.778 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.144 0.856 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.005 -6.988 -23.102 24.322 hybrid contribution 0.647 -0.814 0.717 1.263 sum 3.652 -7.802 -22.385 23.985 Atomic orbital electron populations 1.22011 0.95168 1.02232 1.01772 1.21044 0.96137 0.99074 0.93977 0.91103 1.21552 1.00459 0.95658 0.97397 1.21577 1.01062 0.95632 0.97639 1.21536 1.00636 0.98767 0.94747 1.21609 1.01241 0.94825 0.97577 1.21348 1.00452 0.95240 0.93937 0.90924 1.21212 0.97458 0.96136 0.83930 1.44235 1.54372 1.38868 1.02054 1.17402 0.99059 0.96248 0.84548 1.20167 1.01921 0.98401 0.96334 1.20025 1.03936 1.02970 0.90093 1.19232 0.94522 0.93149 0.87107 1.83985 1.67140 1.48464 1.09830 1.21181 1.28062 1.13909 0.83186 0.89550 1.25205 0.96686 0.96985 0.97822 1.70037 1.32605 1.25600 1.22425 0.85844 0.78954 0.79179 0.79772 1.19703 1.20441 1.19708 1.20985 1.02773 1.00146 0.97040 1.20228 1.03363 1.01688 0.91315 0.92203 0.92950 0.92003 0.92073 0.92114 0.92427 0.91677 0.92201 0.92217 0.91490 0.91846 0.93284 0.92826 0.77756 0.87239 0.86588 0.92286 0.85568 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.15 37.16 0.30 -0.89 16 2 C -0.08 -0.65 2.72 -90.62 -0.25 -0.89 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -0.78 5.45 -26.73 -0.15 -0.93 16 5 C -0.12 -0.82 5.65 -26.73 -0.15 -0.98 16 6 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 7 C -0.12 -0.98 4.80 -26.73 -0.13 -1.11 16 8 C -0.09 -0.80 2.00 -90.62 -0.18 -0.98 16 9 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 10 C 0.14 1.56 3.80 -4.04 -0.02 1.54 16 11 N -0.76 -10.30 5.46 -58.58 -0.32 -10.62 16 12 C 0.13 2.21 6.66 -83.71 -0.56 1.66 16 13 C -0.15 -2.72 9.31 -39.40 -0.37 -3.08 16 14 C -0.15 -3.29 9.98 -39.42 -0.39 -3.68 16 15 C 0.11 2.80 6.65 -39.09 -0.26 2.54 16 16 O -0.19 -5.58 9.76 -0.05 0.00 -5.58 16 17 C -0.39 -11.15 9.48 30.87 0.29 -10.85 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 20 N -0.87 -26.32 13.67 55.48 0.76 -25.56 16 21 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C -0.19 -4.24 9.16 -39.42 -0.36 -4.60 16 26 C -0.14 -2.71 9.89 -39.40 -0.39 -3.10 16 27 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 4.81 -51.93 -0.25 0.23 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 37 H 0.06 0.58 7.18 -51.93 -0.37 0.21 16 38 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 39 H 0.05 0.64 6.52 -51.93 -0.34 0.30 16 40 H 0.39 4.68 7.67 -40.82 -0.31 4.37 16 41 H 0.11 1.76 6.73 -52.49 -0.35 1.40 16 42 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 45 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -31.11 345.51 -9.21 -40.32 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.98 Total: 5.56 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -2.86 Total: -25.47 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.44 Total: -36.18 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.11 -9.21 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394774424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.527 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds