Wall clock time and date at job start Tue Mar 31 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47596 * 2 1 4 4 C 1.53004 * 109.46926 * 240.00271 * 2 1 3 5 5 C 1.53003 * 109.47045 * 300.00228 * 4 2 1 6 6 C 1.53005 * 109.46689 * 299.99892 * 5 4 2 7 7 C 1.52996 * 109.47070 * 60.00254 * 6 5 4 8 8 C 1.52997 * 109.47446 * 120.00249 * 2 1 3 9 9 H 1.09002 * 109.47228 * 179.97438 * 8 2 1 10 10 C 1.52999 * 109.47324 * 300.00157 * 8 2 1 11 11 N 1.46500 * 109.47353 * 184.99818 * 10 8 2 12 12 C 1.39783 * 119.99927 * 179.97438 * 11 10 8 13 13 C 1.38951 * 120.00582 * 359.72674 * 12 11 10 14 14 C 1.38016 * 119.99083 * 179.71425 * 13 12 11 15 15 C 1.38893 * 120.00401 * 0.56195 * 14 13 12 16 16 O 1.35797 * 119.99282 * 179.69680 * 15 14 13 17 17 C 1.34812 * 117.00372 * 174.47834 * 16 15 14 18 18 H 1.07999 * 119.99587 * 5.05918 * 17 16 15 19 19 C 1.38620 * 120.00255 * 185.05721 * 17 16 15 20 20 N 1.31578 * 119.99905 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99688 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47288 * 60.00294 * 21 19 17 23 23 H 1.48502 * 109.46690 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47165 * 299.99991 * 21 19 17 25 25 C 1.38901 * 120.01493 * 359.71280 * 15 14 13 26 26 C 1.38010 * 120.00308 * 0.02562 * 25 15 14 27 27 H 1.09000 * 109.46450 * 299.99595 * 1 2 3 28 28 H 1.08992 * 109.47067 * 59.99495 * 1 2 3 29 29 H 1.08994 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47110 * 59.99773 * 4 2 1 31 31 H 1.09002 * 109.47000 * 180.02562 * 4 2 1 32 32 H 1.08995 * 109.47080 * 180.02562 * 5 4 2 33 33 H 1.08992 * 109.47134 * 59.99635 * 5 4 2 34 34 H 1.09002 * 109.47120 * 299.99752 * 6 5 4 35 35 H 1.09003 * 109.47152 * 180.02562 * 6 5 4 36 36 H 1.08992 * 109.47292 * 60.00243 * 7 6 5 37 37 H 1.09004 * 109.46891 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.46794 * 304.99587 * 10 8 2 39 39 H 1.08998 * 109.47308 * 64.99513 * 10 8 2 40 40 H 0.96998 * 119.99598 * 0.02562 * 11 10 8 41 41 H 1.07997 * 120.00408 * 359.97438 * 13 12 11 42 42 H 1.07997 * 119.99485 * 180.25371 * 14 13 12 43 43 H 0.96999 * 120.00135 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.99835 * 180.02562 * 25 15 14 45 45 H 1.08008 * 119.99581 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1638 1.2491 8 6 2.0401 -0.7213 1.2492 9 1 3.1301 -0.7217 1.2489 10 6 1.5301 -0.0002 2.4985 11 7 2.1143 -0.6178 3.6916 12 6 1.7948 -0.1265 4.9606 13 6 0.9275 0.9514 5.0903 14 6 0.6076 1.4325 6.3437 15 6 1.1616 0.8468 7.4747 16 8 0.8514 1.3243 8.7075 17 6 1.3305 0.6417 9.7667 18 1 1.9981 -0.1934 9.6138 19 6 0.9664 1.0116 11.0521 20 7 0.1527 2.0287 11.2383 21 14 1.6309 0.0660 12.5196 22 1 3.1137 0.1460 12.5299 23 1 1.0942 0.6556 13.7725 24 1 1.2125 -1.3556 12.4233 25 6 2.0330 -0.2270 7.3450 26 6 2.3490 -0.7119 6.0922 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6766 -0.2073 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 1.8936 -2.6776 -2.1391 33 1 0.4400 -2.1637 -1.2493 34 1 3.1300 -2.8850 -0.0002 35 1 1.6770 -3.9128 -0.0003 36 1 0.4401 -2.1638 1.2492 37 1 1.8930 -2.6779 2.1391 38 1 1.8185 1.0501 2.4549 39 1 0.4438 -0.0770 2.5444 40 1 2.7234 -1.3672 3.6008 41 1 0.5005 1.4099 4.2106 42 1 -0.0697 2.2676 6.4447 43 1 -0.1019 2.2877 12.1378 44 1 2.4633 -0.6825 8.2247 45 1 3.0263 -1.5472 5.9915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394774424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:22 Heat of formation + Delta-G solvation = -43.176569 kcal Electronic energy + Delta-G solvation = -22508.260153 eV Core-core repulsion = 19296.376489 eV Total energy + Delta-G solvation = -3211.883664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85008 -40.31627 -38.56707 -35.81650 -34.12809 -32.99499 -32.11894 -31.72242 -29.05315 -27.79275 -27.11597 -25.83778 -23.68780 -23.14535 -22.40797 -21.80911 -19.65919 -19.35046 -18.81740 -17.79305 -16.78434 -16.47533 -16.21806 -15.90329 -15.51409 -15.36754 -15.27626 -14.88858 -14.78954 -14.39007 -14.10523 -14.05884 -13.69139 -13.55440 -13.40604 -13.11355 -12.96181 -12.72404 -12.59206 -12.38813 -12.27566 -12.22789 -12.09587 -11.89948 -11.70421 -11.10226 -11.04502 -10.92056 -10.84960 -10.76781 -10.13801 -9.76589 -8.38443 -7.90971 -6.02134 0.59390 0.94795 1.36808 1.48291 1.53105 2.23444 2.69549 2.92373 3.26542 3.67898 3.72306 3.80132 3.85029 4.13937 4.19177 4.25638 4.33252 4.39202 4.49046 4.50839 4.56713 4.58637 4.69428 4.73869 4.80242 4.84589 4.90541 4.96922 5.03954 5.10899 5.13820 5.17040 5.24036 5.29060 5.30134 5.33910 5.41641 5.48427 5.49620 5.53791 5.56321 5.70853 5.79428 6.00585 6.12201 6.64136 7.05541 7.08427 7.94426 8.85990 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.042062 B = 0.002628 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.520015 B =10653.395307 C =11090.596951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.082 4.082 9 H 0.076 0.924 10 C 0.133 3.867 11 N -0.744 5.744 12 C 0.153 3.847 13 C -0.146 4.146 14 C -0.156 4.156 15 C 0.061 3.939 16 O -0.243 6.243 17 C -0.407 4.407 18 H 0.098 0.902 19 C -0.029 4.029 20 N -0.927 5.927 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.259 1.259 25 C -0.193 4.193 26 C -0.147 4.147 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.401 0.599 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.270 0.730 44 H 0.119 0.881 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -9.345 -25.791 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.101 4.101 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.100 4.100 9 H 0.094 0.906 10 C 0.009 3.991 11 N -0.379 5.379 12 C 0.052 3.948 13 C -0.169 4.169 14 C -0.176 4.176 15 C 0.011 3.989 16 O -0.151 6.151 17 C -0.483 4.483 18 H 0.115 0.885 19 C -0.225 4.225 20 N -0.567 5.567 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.212 4.212 26 C -0.169 4.169 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.237 0.763 41 H 0.157 0.843 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.137 0.863 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.387 -8.932 -25.716 27.574 hybrid contribution 0.250 -0.278 1.086 1.148 sum 4.637 -9.209 -24.631 26.702 Atomic orbital electron populations 1.22006 0.95180 1.02221 1.01745 1.21037 0.96083 0.99097 0.93857 0.91061 1.21536 1.00565 0.95631 0.97098 1.21576 1.01001 0.95569 0.97690 1.21515 1.00756 0.98849 0.94335 1.21592 1.00904 0.94620 0.98036 1.21272 1.00512 0.95224 0.93038 0.90612 1.21402 0.97444 0.96397 0.83880 1.44347 1.53717 1.38653 1.01178 1.17541 0.96653 0.94631 0.85988 1.20416 1.01944 0.98628 0.95882 1.20228 1.03761 1.02875 0.90693 1.19725 0.97090 0.95499 0.86537 1.83933 1.69363 1.50442 1.11352 1.21718 1.28401 1.14344 0.83873 0.88468 1.26536 0.96934 0.98060 1.00979 1.70199 1.35137 1.28129 1.23254 0.84675 0.78744 0.77864 0.75080 1.18234 1.19784 1.18299 1.21057 1.02252 0.99492 0.98447 1.20496 1.03749 1.02471 0.90176 0.93042 0.92224 0.92003 0.91364 0.91914 0.91622 0.91797 0.91947 0.91917 0.92026 0.92407 0.93220 0.92837 0.76316 0.84270 0.86995 0.92152 0.86316 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.15 71.98 0.59 -1.43 16 2 C -0.08 -1.04 2.72 -10.79 -0.03 -1.07 16 3 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.20 5.45 30.60 0.17 -1.03 16 5 C -0.12 -1.29 5.65 30.60 0.17 -1.12 16 6 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 7 C -0.11 -1.62 4.80 30.59 0.15 -1.47 16 8 C -0.08 -1.18 2.00 -10.79 -0.02 -1.20 16 9 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 10 C 0.13 2.58 3.80 86.38 0.33 2.91 16 11 N -0.74 -17.56 5.46 -339.26 -1.85 -19.41 16 12 C 0.15 4.99 6.66 38.21 0.25 5.25 16 13 C -0.15 -5.21 9.31 22.39 0.21 -5.00 16 14 C -0.16 -6.95 9.98 22.37 0.22 -6.73 16 15 C 0.06 3.17 6.65 22.59 0.15 3.32 16 16 O -0.24 -15.20 9.76 -23.08 -0.23 -15.43 16 17 C -0.41 -24.54 9.48 67.91 0.64 -23.90 16 18 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 19 C -0.03 -1.71 5.49 84.82 0.47 -1.24 16 20 N -0.93 -58.89 13.67 21.61 0.30 -58.59 16 21 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 25 C -0.19 -8.70 9.16 22.37 0.20 -8.50 16 26 C -0.15 -5.24 9.89 22.38 0.22 -5.01 16 27 H 0.05 0.75 6.54 -2.39 -0.02 0.74 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.81 4.81 -2.39 -0.01 0.80 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.71 6.43 -2.39 -0.02 0.70 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.95 6.43 -2.39 -0.02 0.94 16 37 H 0.06 0.88 7.18 -2.39 -0.02 0.87 16 38 H 0.05 1.02 7.94 -2.38 -0.02 1.00 16 39 H 0.05 1.10 6.52 -2.39 -0.02 1.09 16 40 H 0.40 8.01 7.67 -92.71 -0.71 7.30 16 41 H 0.14 4.09 6.73 -2.91 -0.02 4.07 16 42 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 45 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -71.35 345.51 4.42 -66.93 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.28 Total: 27.59 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 3.90 Total: -47.43 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.56 Total: -78.00 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.23 Total: -15.43 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.35 4.42 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394774424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.754 kcal (2) G-P(sol) polarization free energy of solvation -71.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds