Wall clock time and date at job start Tue Mar 31 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47226 * 2 1 4 4 C 1.52999 * 109.46846 * 119.99540 * 2 1 3 5 5 C 1.53006 * 109.47291 * 59.99982 * 4 2 1 6 6 C 1.53002 * 109.46815 * 60.00072 * 5 4 2 7 7 C 1.53000 * 109.47132 * 299.99628 * 6 5 4 8 8 C 1.52992 * 109.47134 * 239.99382 * 2 1 3 9 9 H 1.08999 * 109.47049 * 180.02562 * 8 2 1 10 10 C 1.52999 * 109.47125 * 60.00329 * 8 2 1 11 11 N 1.46508 * 109.46972 * 174.99865 * 10 8 2 12 12 C 1.39668 * 119.99699 * 179.97438 * 11 10 8 13 13 C 1.39006 * 120.04352 * 0.02562 * 12 11 10 14 14 C 1.38145 * 120.06582 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.14250 * 359.97438 * 14 13 12 16 16 C 1.38915 * 120.07647 * 0.02562 * 15 14 13 17 17 O 1.35755 * 120.03084 * 179.97438 * 16 15 14 18 18 C 1.34831 * 117.00000 * 185.51989 * 17 16 15 19 19 H 1.08002 * 119.99902 * 354.91152 * 18 17 16 20 20 C 1.38649 * 119.99735 * 174.92016 * 18 17 16 21 21 N 1.31554 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47413 * 270.00296 * 22 20 18 24 24 H 1.48508 * 109.46635 * 30.00236 * 22 20 18 25 25 H 1.48494 * 109.47191 * 149.99781 * 22 20 18 26 26 C 1.38754 * 120.03821 * 180.27838 * 12 11 10 27 27 H 1.08997 * 109.47460 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47564 * 300.00558 * 1 2 3 29 29 H 1.08997 * 109.47429 * 60.00619 * 1 2 3 30 30 H 1.09002 * 109.47484 * 300.00287 * 4 2 1 31 31 H 1.08999 * 109.47369 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47122 * 299.99879 * 5 4 2 33 33 H 1.09001 * 109.47085 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.46738 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47433 * 59.99997 * 6 5 4 36 36 H 1.08994 * 109.47263 * 300.00473 * 7 6 5 37 37 H 1.08993 * 109.46934 * 179.97438 * 7 6 5 38 38 H 1.08993 * 109.47157 * 54.99884 * 10 8 2 39 39 H 1.08995 * 109.46893 * 294.99596 * 10 8 2 40 40 H 0.96999 * 119.99759 * 0.02562 * 11 10 8 41 41 H 1.08004 * 119.96422 * 0.02562 * 13 12 11 42 42 H 1.08002 * 119.92850 * 179.97438 * 14 13 12 43 43 H 1.07999 * 119.96218 * 180.02562 * 15 14 13 44 44 H 0.96998 * 120.00255 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.07177 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2495 6 6 2.0400 -2.8850 0.0003 7 6 1.5299 -2.1639 -1.2490 8 6 2.0399 -0.7213 -1.2491 9 1 3.1299 -0.7217 -1.2489 10 6 1.5300 -0.0002 -2.4984 11 7 2.1142 -0.6180 -3.6915 12 6 1.7942 -0.1277 -4.9595 13 6 0.9218 0.9466 -5.0905 14 6 0.6045 1.4315 -6.3446 15 6 1.1531 0.8512 -7.4722 16 6 2.0255 -0.2227 -7.3481 17 8 2.5635 -0.7925 -8.4566 18 6 3.3104 -1.9002 -8.2744 19 1 3.5257 -2.2478 -7.2748 20 6 3.8019 -2.5928 -9.3703 21 7 3.5393 -2.1696 -10.5879 22 14 4.8372 -4.1271 -9.1179 23 1 6.2702 -3.7481 -9.0277 24 1 4.4236 -4.8020 -7.8613 25 1 4.6407 -5.0509 -10.2637 26 6 2.3425 -0.7158 -6.0904 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.6765 -0.2073 2.1393 31 1 3.1299 -0.7216 1.2492 32 1 0.4399 -2.1637 1.2494 33 1 1.8928 -2.6773 2.1397 34 1 1.6762 -3.9125 0.0002 35 1 3.1299 -2.8851 0.0003 36 1 0.4400 -2.1639 -1.2491 37 1 1.8937 -2.6775 -2.1389 38 1 1.8184 1.0500 -2.4548 39 1 0.4438 -0.0771 -2.5443 40 1 2.7227 -1.3679 -3.6008 41 1 0.4918 1.4026 -4.2110 42 1 -0.0738 2.2661 -6.4438 43 1 0.9033 1.2329 -8.4511 44 1 3.8836 -2.6539 -11.3545 45 1 3.0176 -1.5529 -5.9917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394785857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:25 Heat of formation + Delta-G solvation = -28.969162 kcal Electronic energy + Delta-G solvation = -22811.313797 eV Core-core repulsion = 19600.046213 eV Total energy + Delta-G solvation = -3211.267585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.85713 -38.86286 -36.87940 -34.69985 -32.39100 -32.15109 -31.39302 -29.08522 -28.15240 -26.94670 -25.19594 -25.09046 -22.46469 -21.92239 -21.37668 -20.29322 -18.68404 -17.81316 -17.27108 -16.10386 -15.58142 -15.20931 -14.97087 -14.73538 -14.36448 -14.19254 -14.00498 -13.71074 -13.48911 -13.19218 -12.96748 -12.88717 -12.76424 -12.25930 -12.06821 -11.81595 -11.71229 -11.59248 -11.39656 -11.27062 -11.07119 -10.81434 -10.72981 -10.57133 -10.41177 -10.33182 -10.20585 -10.13158 -9.33952 -9.30406 -8.71895 -7.29323 -6.70377 -6.37249 -3.96372 2.43712 2.63219 3.16356 3.17244 3.21615 3.83677 4.02788 4.40641 4.45901 4.53074 4.75821 4.92656 4.97429 5.10392 5.12708 5.14062 5.19756 5.25923 5.39209 5.42058 5.46474 5.56677 5.62263 5.73012 5.74778 5.77473 5.78977 5.89269 5.90452 6.01682 6.04262 6.05773 6.12082 6.18294 6.33452 6.36032 6.42256 6.71278 6.71431 7.10341 7.20110 7.44391 7.54467 7.73127 8.09094 8.09675 8.27671 9.09032 9.82412 10.81304 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.003579 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.261828 B = 7820.447918 C = 9184.363142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.092 4.092 9 H 0.074 0.926 10 C 0.136 3.864 11 N -0.753 5.753 12 C 0.250 3.750 13 C -0.279 4.279 14 C -0.040 4.040 15 C -0.238 4.238 16 C 0.190 3.810 17 O -0.180 6.180 18 C -0.388 4.388 19 H 0.090 0.910 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.939 3.061 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.278 1.278 26 C -0.303 4.303 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.393 0.607 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.269 0.731 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 1.563 22.443 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.111 4.111 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.385 5.385 12 C 0.148 3.852 13 C -0.302 4.302 14 C -0.059 4.059 15 C -0.258 4.258 16 C 0.135 3.865 17 O -0.083 6.083 18 C -0.465 4.465 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.764 3.236 23 H -0.200 1.200 24 H -0.193 1.193 25 H -0.203 1.203 26 C -0.327 4.327 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.227 0.773 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.040 1.660 22.088 22.516 hybrid contribution 0.815 -1.072 0.204 1.362 sum -3.225 0.588 22.292 22.532 Atomic orbital electron populations 1.22011 0.95203 1.02261 1.01687 1.21034 0.96099 0.99041 0.93988 0.91119 1.21551 1.00515 0.95680 0.97321 1.21576 1.01017 0.95608 0.97678 1.21533 1.00721 0.98811 0.94642 1.21622 1.01209 0.94780 0.97763 1.21368 1.00594 0.95309 0.93847 0.90803 1.21276 0.97594 0.96249 0.83788 1.44564 1.53228 1.38272 1.02486 1.17472 0.92052 0.91601 0.84053 1.20065 1.09499 1.03647 0.96999 1.20372 0.96781 0.97143 0.91636 1.20031 1.05565 1.01728 0.98514 1.19067 0.89753 0.91192 0.86468 1.83987 1.57925 1.38876 1.27480 1.21293 1.28916 1.01811 0.94443 0.89233 1.25259 0.98004 0.98981 0.94330 1.70040 1.43092 1.39245 0.97726 0.85746 0.79505 0.80075 0.78273 1.19984 1.19329 1.20312 1.20502 1.12663 1.08436 0.91094 0.91966 0.92961 0.92265 0.92083 0.92073 0.91711 0.92407 0.92144 0.92122 0.91478 0.91725 0.92957 0.92512 0.77281 0.87956 0.87278 0.86972 0.92159 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.15 37.16 0.30 -0.92 16 2 C -0.08 -0.67 2.72 -90.63 -0.25 -0.92 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.83 5.45 -26.73 -0.15 -0.98 16 5 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 7 C -0.12 -1.11 4.80 -26.73 -0.13 -1.24 16 8 C -0.09 -0.88 2.00 -90.62 -0.18 -1.06 16 9 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 10 C 0.14 1.62 3.80 -4.04 -0.02 1.61 16 11 N -0.75 -11.40 5.46 -58.65 -0.32 -11.72 16 12 C 0.25 4.79 6.65 -83.81 -0.56 4.24 16 13 C -0.28 -5.12 9.31 -39.33 -0.37 -5.49 16 14 C -0.04 -0.77 10.03 -39.64 -0.40 -1.16 16 15 C -0.24 -5.31 9.99 -39.35 -0.39 -5.70 16 16 C 0.19 4.79 6.65 -39.14 -0.26 4.53 16 17 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 18 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 22 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.30 -6.86 9.01 -39.20 -0.35 -7.21 16 27 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 37 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 38 H 0.05 0.64 7.95 -51.93 -0.41 0.23 16 39 H 0.06 0.69 6.51 -51.93 -0.34 0.36 16 40 H 0.39 5.61 7.66 -40.82 -0.31 5.29 16 41 H 0.10 1.63 6.73 -52.48 -0.35 1.27 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.12 2.80 5.63 -52.49 -0.30 2.50 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -30.96 345.50 -9.21 -40.17 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.98 Total: 7.27 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -2.85 Total: -26.38 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.44 Total: -36.89 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.96 -9.21 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394785857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.204 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds