Wall clock time and date at job start Tue Mar 31 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47226 * 2 1 4 4 C 1.52999 * 109.46846 * 119.99540 * 2 1 3 5 5 C 1.53006 * 109.47291 * 59.99982 * 4 2 1 6 6 C 1.53002 * 109.46815 * 60.00072 * 5 4 2 7 7 C 1.53000 * 109.47132 * 299.99628 * 6 5 4 8 8 C 1.52992 * 109.47134 * 239.99382 * 2 1 3 9 9 H 1.08999 * 109.47049 * 180.02562 * 8 2 1 10 10 C 1.52999 * 109.47125 * 60.00329 * 8 2 1 11 11 N 1.46508 * 109.46972 * 174.99865 * 10 8 2 12 12 C 1.39668 * 119.99699 * 179.97438 * 11 10 8 13 13 C 1.39006 * 120.04352 * 0.02562 * 12 11 10 14 14 C 1.38145 * 120.06582 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.14250 * 359.97438 * 14 13 12 16 16 C 1.38915 * 120.07647 * 0.02562 * 15 14 13 17 17 O 1.35755 * 120.03084 * 179.97438 * 16 15 14 18 18 C 1.34831 * 117.00000 * 185.51989 * 17 16 15 19 19 H 1.08002 * 119.99902 * 354.91152 * 18 17 16 20 20 C 1.38649 * 119.99735 * 174.92016 * 18 17 16 21 21 N 1.31554 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47413 * 270.00296 * 22 20 18 24 24 H 1.48508 * 109.46635 * 30.00236 * 22 20 18 25 25 H 1.48494 * 109.47191 * 149.99781 * 22 20 18 26 26 C 1.38754 * 120.03821 * 180.27838 * 12 11 10 27 27 H 1.08997 * 109.47460 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47564 * 300.00558 * 1 2 3 29 29 H 1.08997 * 109.47429 * 60.00619 * 1 2 3 30 30 H 1.09002 * 109.47484 * 300.00287 * 4 2 1 31 31 H 1.08999 * 109.47369 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47122 * 299.99879 * 5 4 2 33 33 H 1.09001 * 109.47085 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.46738 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47433 * 59.99997 * 6 5 4 36 36 H 1.08994 * 109.47263 * 300.00473 * 7 6 5 37 37 H 1.08993 * 109.46934 * 179.97438 * 7 6 5 38 38 H 1.08993 * 109.47157 * 54.99884 * 10 8 2 39 39 H 1.08995 * 109.46893 * 294.99596 * 10 8 2 40 40 H 0.96999 * 119.99759 * 0.02562 * 11 10 8 41 41 H 1.08004 * 119.96422 * 0.02562 * 13 12 11 42 42 H 1.08002 * 119.92850 * 179.97438 * 14 13 12 43 43 H 1.07999 * 119.96218 * 180.02562 * 15 14 13 44 44 H 0.96998 * 120.00255 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.07177 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2495 6 6 2.0400 -2.8850 0.0003 7 6 1.5299 -2.1639 -1.2490 8 6 2.0399 -0.7213 -1.2491 9 1 3.1299 -0.7217 -1.2489 10 6 1.5300 -0.0002 -2.4984 11 7 2.1142 -0.6180 -3.6915 12 6 1.7942 -0.1277 -4.9595 13 6 0.9218 0.9466 -5.0905 14 6 0.6045 1.4315 -6.3446 15 6 1.1531 0.8512 -7.4722 16 6 2.0255 -0.2227 -7.3481 17 8 2.5635 -0.7925 -8.4566 18 6 3.3104 -1.9002 -8.2744 19 1 3.5257 -2.2478 -7.2748 20 6 3.8019 -2.5928 -9.3703 21 7 3.5393 -2.1696 -10.5879 22 14 4.8372 -4.1271 -9.1179 23 1 6.2702 -3.7481 -9.0277 24 1 4.4236 -4.8020 -7.8613 25 1 4.6407 -5.0509 -10.2637 26 6 2.3425 -0.7158 -6.0904 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.6765 -0.2073 2.1393 31 1 3.1299 -0.7216 1.2492 32 1 0.4399 -2.1637 1.2494 33 1 1.8928 -2.6773 2.1397 34 1 1.6762 -3.9125 0.0002 35 1 3.1299 -2.8851 0.0003 36 1 0.4400 -2.1639 -1.2491 37 1 1.8937 -2.6775 -2.1389 38 1 1.8184 1.0500 -2.4548 39 1 0.4438 -0.0771 -2.5443 40 1 2.7227 -1.3679 -3.6008 41 1 0.4918 1.4026 -4.2110 42 1 -0.0738 2.2661 -6.4438 43 1 0.9033 1.2329 -8.4511 44 1 3.8836 -2.6539 -11.3545 45 1 3.0176 -1.5529 -5.9917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394785857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:25 Heat of formation + Delta-G solvation = -46.280370 kcal Electronic energy + Delta-G solvation = -22812.064468 eV Core-core repulsion = 19600.046213 eV Total energy + Delta-G solvation = -3212.018255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90414 -40.34744 -38.54681 -36.05101 -34.22213 -33.10989 -32.36843 -30.66256 -29.57598 -27.79627 -27.19507 -26.06845 -23.44252 -23.21436 -22.53048 -21.69811 -19.72644 -19.46433 -18.86023 -17.33091 -16.77141 -16.49265 -16.37690 -15.95893 -15.76822 -15.47519 -15.39892 -14.98642 -14.80587 -14.43813 -14.17880 -14.10513 -13.63512 -13.55461 -13.45455 -13.10661 -12.79964 -12.63748 -12.48790 -12.40284 -12.27137 -12.17581 -12.05415 -11.91831 -11.73268 -11.29893 -11.07880 -10.96919 -10.87435 -10.79299 -10.57035 -9.09411 -8.45161 -8.21048 -6.13550 0.77170 0.93223 1.33769 1.44358 1.51625 2.18571 2.58305 2.89817 3.27634 3.60127 3.68139 3.76909 3.81952 4.20338 4.23581 4.30964 4.34816 4.41837 4.46632 4.48872 4.54482 4.62461 4.69739 4.75486 4.77404 4.81525 4.89434 4.97294 5.06881 5.11276 5.14493 5.15026 5.17138 5.21717 5.28446 5.31331 5.40427 5.46341 5.48778 5.51510 5.69116 5.76152 5.81229 6.05118 6.12724 6.62314 6.87792 7.00199 7.83751 8.78612 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.003579 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.261828 B = 7820.447918 C = 9184.363142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.084 4.084 9 H 0.071 0.929 10 C 0.133 3.867 11 N -0.744 5.744 12 C 0.256 3.744 13 C -0.265 4.265 14 C -0.026 4.026 15 C -0.263 4.263 16 C 0.153 3.847 17 O -0.233 6.233 18 C -0.411 4.411 19 H 0.098 0.902 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.254 1.254 25 H -0.270 1.270 26 C -0.318 4.318 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.397 0.603 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.106 0.894 44 H 0.272 0.728 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 1.856 26.084 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.103 4.103 9 H 0.089 0.911 10 C 0.009 3.991 11 N -0.373 5.373 12 C 0.151 3.849 13 C -0.287 4.287 14 C -0.044 4.044 15 C -0.284 4.284 16 C 0.102 3.898 17 O -0.139 6.139 18 C -0.487 4.487 19 H 0.116 0.884 20 C -0.221 4.221 21 N -0.561 5.561 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.178 1.178 25 H -0.195 1.195 26 C -0.342 4.342 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.232 0.768 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.600 1.974 25.816 26.297 hybrid contribution 0.830 -0.987 -0.658 1.448 sum -3.770 0.987 25.158 25.458 Atomic orbital electron populations 1.22005 0.94839 1.02241 1.02008 1.21023 0.96337 0.99095 0.93389 0.90701 1.21544 1.00481 0.95574 0.97287 1.21568 1.01124 0.95621 0.97372 1.21518 1.00612 0.98912 0.94534 1.21599 1.01085 0.94800 0.97806 1.21304 1.00353 0.95197 0.93462 0.91098 1.21510 0.97782 0.96626 0.83175 1.44734 1.52590 1.37964 1.02058 1.17572 0.91294 0.91376 0.84634 1.20540 1.07761 1.02320 0.98120 1.20826 0.95849 0.97254 0.90508 1.20262 1.06356 1.01935 0.99856 1.19636 0.91102 0.92427 0.86665 1.83948 1.60014 1.40138 1.29802 1.21785 1.29380 1.02283 0.95265 0.88440 1.26583 0.99250 1.02592 0.93685 1.70189 1.45510 1.41519 0.98886 0.84599 0.77607 0.75213 0.78838 1.18769 1.17806 1.19465 1.20511 1.13365 1.08746 0.91586 0.92165 0.91912 0.92709 0.90963 0.92165 0.91513 0.91582 0.92024 0.92281 0.91593 0.93284 0.92310 0.91960 0.76838 0.84203 0.83030 0.87568 0.91884 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.15 71.98 0.59 -1.35 16 2 C -0.08 -1.05 2.72 -10.80 -0.03 -1.08 16 3 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.30 5.45 30.60 0.17 -1.13 16 5 C -0.12 -1.44 5.65 30.60 0.17 -1.27 16 6 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 7 C -0.12 -1.98 4.80 30.60 0.15 -1.83 16 8 C -0.08 -1.40 2.00 -10.79 -0.02 -1.42 16 9 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 10 C 0.13 2.76 3.80 86.38 0.33 3.09 16 11 N -0.74 -21.00 5.46 -339.47 -1.85 -22.85 16 12 C 0.26 9.42 6.65 38.20 0.25 9.68 16 13 C -0.26 -8.84 9.31 22.43 0.21 -8.63 16 14 C -0.03 -0.92 10.03 22.23 0.22 -0.69 16 15 C -0.26 -11.96 9.99 22.42 0.22 -11.74 16 16 C 0.15 8.06 6.65 22.56 0.15 8.21 16 17 O -0.23 -14.63 9.76 -22.81 -0.22 -14.85 16 18 C -0.41 -24.83 9.49 67.92 0.64 -24.18 16 19 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 20 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 21 N -0.92 -58.12 13.67 21.61 0.30 -57.82 16 22 Si 1.02 44.01 29.55 68.60 2.03 46.03 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 C -0.32 -14.70 9.01 22.52 0.20 -14.50 16 27 H 0.06 0.79 4.81 -2.39 -0.01 0.78 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.74 6.54 -2.39 -0.02 0.72 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.79 6.43 -2.39 -0.02 0.78 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.15 6.43 -2.39 -0.02 1.14 16 37 H 0.05 0.99 7.18 -2.39 -0.02 0.97 16 38 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 39 H 0.06 1.29 6.51 -2.39 -0.02 1.27 16 40 H 0.40 10.82 7.66 -92.71 -0.71 10.10 16 41 H 0.14 3.68 6.73 -2.91 -0.02 3.66 16 42 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 43 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.11 5.29 5.63 -2.91 -0.02 5.27 16 Total: -1.00 -71.59 345.50 4.43 -67.16 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.28 Total: 31.66 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 3.90 Total: -49.32 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.56 Total: -80.68 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.22 Total: -14.85 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.59 4.43 -67.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394785857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.879 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds