Wall clock time and date at job start Tue Mar 31 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46816 * 2 1 4 4 C 1.53003 * 109.47086 * 240.00428 * 2 1 3 5 5 C 1.53000 * 109.47003 * 300.00094 * 4 2 1 6 6 C 1.52995 * 109.47033 * 299.99802 * 5 4 2 7 7 C 1.53003 * 109.47064 * 60.00236 * 6 5 4 8 8 C 1.52993 * 109.46900 * 120.00459 * 2 1 3 9 9 H 1.09003 * 109.46961 * 179.97438 * 8 2 1 10 10 C 1.53003 * 109.47226 * 299.99883 * 8 2 1 11 11 N 1.46500 * 109.47030 * 185.00473 * 10 8 2 12 12 C 1.39671 * 120.00042 * 180.02562 * 11 10 8 13 13 C 1.39013 * 120.03800 * 359.97438 * 12 11 10 14 14 C 1.38152 * 120.06179 * 179.97438 * 13 12 11 15 15 C 1.38169 * 120.14063 * 359.97438 * 14 13 12 16 16 C 1.38915 * 120.07999 * 359.97438 * 15 14 13 17 17 O 1.35755 * 120.02945 * 180.02562 * 16 15 14 18 18 C 1.34830 * 117.00165 * 185.51568 * 17 16 15 19 19 H 1.08000 * 119.99641 * 354.91669 * 18 17 16 20 20 C 1.38648 * 120.00487 * 174.92267 * 18 17 16 21 21 N 1.31566 * 119.99455 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00331 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46925 * 60.00032 * 22 20 18 24 24 H 1.48499 * 109.47107 * 299.99640 * 22 20 18 25 25 H 1.48499 * 109.46973 * 179.97438 * 22 20 18 26 26 C 1.38749 * 120.04248 * 180.22490 * 12 11 10 27 27 H 1.08994 * 109.47295 * 299.99650 * 1 2 3 28 28 H 1.09000 * 109.46907 * 59.99834 * 1 2 3 29 29 H 1.09000 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47083 * 180.02562 * 4 2 1 31 31 H 1.09006 * 109.46835 * 59.99825 * 4 2 1 32 32 H 1.09001 * 109.46837 * 179.97438 * 5 4 2 33 33 H 1.09003 * 109.47197 * 60.00049 * 5 4 2 34 34 H 1.08993 * 109.47437 * 300.00125 * 6 5 4 35 35 H 1.09004 * 109.47389 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47062 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47104 * 59.99791 * 7 6 5 38 38 H 1.08997 * 109.46949 * 65.00432 * 10 8 2 39 39 H 1.09003 * 109.47005 * 304.99936 * 10 8 2 40 40 H 0.97003 * 119.99986 * 359.97438 * 11 10 8 41 41 H 1.08002 * 119.96548 * 0.02562 * 13 12 11 42 42 H 1.08000 * 119.92638 * 180.02562 * 14 13 12 43 43 H 1.07998 * 119.95619 * 179.97438 * 15 14 13 44 44 H 0.96996 * 120.00048 * 359.97438 * 21 20 18 45 45 H 1.08000 * 120.07157 * 0.05217 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0003 7 6 1.5301 -2.1638 1.2490 8 6 2.0400 -0.7213 1.2491 9 1 3.1300 -0.7217 1.2489 10 6 1.5300 -0.0002 2.4985 11 7 2.1142 -0.6178 3.6915 12 6 1.7941 -0.1276 4.9596 13 6 0.9217 0.9467 5.0905 14 6 0.6043 1.4317 6.3446 15 6 1.1521 0.8507 7.4722 16 6 2.0237 -0.2239 7.3482 17 8 2.5610 -0.7943 8.4568 18 6 3.4856 -1.7563 8.2634 19 1 3.7078 -2.0984 7.2634 20 6 4.1510 -2.3066 9.3481 21 7 3.8805 -1.8896 10.5663 22 14 5.4314 -3.6401 9.0801 23 1 6.5215 -3.1137 8.2199 24 1 4.7982 -4.8084 8.4175 25 1 5.9929 -4.0575 10.3900 26 6 2.3505 -0.7089 6.0899 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 -0.7216 -1.2491 31 1 1.6767 -0.2072 -2.1393 32 1 1.8930 -2.6773 -2.1397 33 1 0.4400 -2.1636 -1.2494 34 1 3.1300 -2.8850 -0.0003 35 1 1.6763 -3.9125 -0.0001 36 1 1.8931 -2.6780 2.1390 37 1 0.4400 -2.1638 1.2490 38 1 0.4437 -0.0771 2.5444 39 1 1.8184 1.0501 2.4549 40 1 2.7228 -1.3678 3.6008 41 1 0.4909 1.4021 4.2110 42 1 -0.0741 2.2662 6.4438 43 1 0.9023 1.2324 8.4510 44 1 3.2158 -1.1970 10.7054 45 1 3.0324 -1.5406 5.9908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394785860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:32 Heat of formation + Delta-G solvation = -35.317488 kcal Electronic energy + Delta-G solvation = -22837.555197 eV Core-core repulsion = 19626.012328 eV Total energy + Delta-G solvation = -3211.542869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88624 -38.95995 -37.00414 -34.78148 -32.41621 -32.13737 -31.42146 -29.13991 -28.16327 -26.96882 -25.13436 -24.78658 -22.48661 -21.95457 -21.38615 -20.42584 -18.70464 -18.20169 -17.24707 -16.13505 -15.66879 -15.25578 -14.88239 -14.73563 -14.50395 -14.20521 -13.99634 -13.76821 -13.63433 -13.30516 -13.03074 -12.94169 -12.91231 -12.41445 -12.10246 -11.84924 -11.73977 -11.42755 -11.29145 -11.11297 -11.00439 -10.78228 -10.63710 -10.40437 -10.37640 -10.26507 -10.20538 -10.15459 -9.39063 -9.36998 -8.67314 -7.36839 -6.77537 -6.69846 -3.99204 2.36486 2.55702 3.26012 3.31752 3.47888 3.79060 4.17252 4.38486 4.43825 4.50807 4.72140 4.90538 4.95386 5.08138 5.10642 5.11945 5.18171 5.23626 5.29556 5.37066 5.44571 5.54027 5.59923 5.68319 5.70938 5.74484 5.76019 5.87093 5.88466 5.97934 5.99852 6.02890 6.10014 6.15804 6.23513 6.33727 6.36830 6.61807 6.64525 7.03503 7.25246 7.36604 7.57893 7.70827 8.02101 8.20165 8.49079 9.00721 9.71587 10.74458 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.003565 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.761493 B = 7852.196232 C = 9184.818031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.092 4.092 9 H 0.074 0.926 10 C 0.135 3.865 11 N -0.753 5.753 12 C 0.250 3.750 13 C -0.278 4.278 14 C -0.040 4.040 15 C -0.241 4.241 16 C 0.193 3.807 17 O -0.204 6.204 18 C -0.469 4.469 19 H 0.082 0.918 20 C 0.008 3.992 21 N -0.885 5.885 22 Si 1.095 2.905 23 H -0.282 1.282 24 H -0.282 1.282 25 H -0.274 1.274 26 C -0.299 4.299 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.394 0.606 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.282 0.718 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 1.477 -22.972 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.111 4.111 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.385 5.385 12 C 0.149 3.851 13 C -0.301 4.301 14 C -0.059 4.059 15 C -0.262 4.262 16 C 0.139 3.861 17 O -0.108 6.108 18 C -0.545 4.545 19 H 0.099 0.901 20 C -0.196 4.196 21 N -0.517 5.517 22 Si 0.920 3.080 23 H -0.209 1.209 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.323 4.323 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.228 0.772 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.092 0.908 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.754 0.610 -22.022 22.348 hybrid contribution -0.838 0.739 -1.022 1.514 sum -4.592 1.349 -23.043 23.535 Atomic orbital electron populations 1.22013 0.95206 1.02262 1.01681 1.21037 0.96095 0.99046 0.93988 0.91115 1.21550 1.00533 0.95682 0.97304 1.21575 1.01012 0.95604 0.97690 1.21533 1.00744 0.98813 0.94614 1.21622 1.01197 0.94766 0.97788 1.21366 1.00622 0.95314 0.93814 0.90771 1.21287 0.97589 0.96275 0.83784 1.44570 1.53179 1.38255 1.02460 1.17477 0.91918 0.91616 0.84115 1.20087 1.09394 1.03557 0.97026 1.20367 0.96670 0.97207 0.91611 1.20009 1.06721 1.00905 0.98520 1.18911 0.90889 0.90206 0.86125 1.83674 1.50568 1.48284 1.28258 1.22165 1.18641 1.16485 0.97248 0.90059 1.26491 1.00254 1.01646 0.91259 1.70567 1.31911 1.28025 1.21232 0.83118 0.74475 0.74049 0.76403 1.20851 1.20842 1.19818 1.20509 1.12244 1.08540 0.91030 0.92298 0.92936 0.91958 0.92052 0.92063 0.92376 0.91715 0.92096 0.92122 0.91746 0.91496 0.92496 0.92933 0.77224 0.87833 0.87189 0.87133 0.90827 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.15 37.16 0.30 -0.91 16 2 C -0.08 -0.67 2.72 -90.62 -0.25 -0.92 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.83 5.45 -26.73 -0.15 -0.97 16 5 C -0.12 -0.89 5.65 -26.73 -0.15 -1.04 16 6 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 7 C -0.12 -1.10 4.80 -26.73 -0.13 -1.23 16 8 C -0.09 -0.88 2.00 -90.62 -0.18 -1.06 16 9 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 10 C 0.14 1.62 3.80 -4.04 -0.02 1.60 16 11 N -0.75 -11.41 5.46 -58.65 -0.32 -11.73 16 12 C 0.25 4.82 6.65 -83.81 -0.56 4.27 16 13 C -0.28 -5.09 9.31 -39.33 -0.37 -5.45 16 14 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 15 C -0.24 -5.35 9.99 -39.36 -0.39 -5.74 16 16 C 0.19 4.87 6.65 -39.14 -0.26 4.61 16 17 O -0.20 -5.94 9.16 0.04 0.00 -5.94 16 18 C -0.47 -13.58 9.49 30.88 0.29 -13.29 16 19 H 0.08 2.22 5.20 -52.49 -0.27 1.95 16 20 C 0.01 0.24 5.49 -17.51 -0.10 0.14 16 21 N -0.88 -27.02 13.70 55.48 0.76 -26.26 16 22 Si 1.10 24.20 29.92 -169.99 -5.09 19.12 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.30 -6.84 9.01 -39.20 -0.35 -7.20 16 27 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 4.81 -51.93 -0.25 0.24 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.68 7.18 -51.93 -0.37 0.31 16 37 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 38 H 0.06 0.69 6.51 -51.93 -0.34 0.35 16 39 H 0.05 0.65 7.95 -51.93 -0.41 0.23 16 40 H 0.39 5.63 7.66 -40.82 -0.31 5.32 16 41 H 0.10 1.64 6.73 -52.49 -0.35 1.28 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 44 H 0.28 8.81 7.97 -40.82 -0.33 8.48 16 45 H 0.12 2.88 5.63 -52.49 -0.30 2.59 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -31.23 344.96 -9.27 -40.49 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.96 Total: 8.59 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -2.85 Total: -29.47 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.44 Total: -37.99 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: 0.00 Total: -5.94 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.09 Total: 19.12 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.23 -9.27 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394785860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.177 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds