Wall clock time and date at job start Tue Mar 31 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46816 * 2 1 4 4 C 1.53003 * 109.47086 * 240.00428 * 2 1 3 5 5 C 1.53000 * 109.47003 * 300.00094 * 4 2 1 6 6 C 1.52995 * 109.47033 * 299.99802 * 5 4 2 7 7 C 1.53003 * 109.47064 * 60.00236 * 6 5 4 8 8 C 1.52993 * 109.46900 * 120.00459 * 2 1 3 9 9 H 1.09003 * 109.46961 * 179.97438 * 8 2 1 10 10 C 1.53003 * 109.47226 * 299.99883 * 8 2 1 11 11 N 1.46500 * 109.47030 * 185.00473 * 10 8 2 12 12 C 1.39671 * 120.00042 * 180.02562 * 11 10 8 13 13 C 1.39013 * 120.03800 * 359.97438 * 12 11 10 14 14 C 1.38152 * 120.06179 * 179.97438 * 13 12 11 15 15 C 1.38169 * 120.14063 * 359.97438 * 14 13 12 16 16 C 1.38915 * 120.07999 * 359.97438 * 15 14 13 17 17 O 1.35755 * 120.02945 * 180.02562 * 16 15 14 18 18 C 1.34830 * 117.00165 * 185.51568 * 17 16 15 19 19 H 1.08000 * 119.99641 * 354.91669 * 18 17 16 20 20 C 1.38648 * 120.00487 * 174.92267 * 18 17 16 21 21 N 1.31566 * 119.99455 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00331 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46925 * 60.00032 * 22 20 18 24 24 H 1.48499 * 109.47107 * 299.99640 * 22 20 18 25 25 H 1.48499 * 109.46973 * 179.97438 * 22 20 18 26 26 C 1.38749 * 120.04248 * 180.22490 * 12 11 10 27 27 H 1.08994 * 109.47295 * 299.99650 * 1 2 3 28 28 H 1.09000 * 109.46907 * 59.99834 * 1 2 3 29 29 H 1.09000 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47083 * 180.02562 * 4 2 1 31 31 H 1.09006 * 109.46835 * 59.99825 * 4 2 1 32 32 H 1.09001 * 109.46837 * 179.97438 * 5 4 2 33 33 H 1.09003 * 109.47197 * 60.00049 * 5 4 2 34 34 H 1.08993 * 109.47437 * 300.00125 * 6 5 4 35 35 H 1.09004 * 109.47389 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47062 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47104 * 59.99791 * 7 6 5 38 38 H 1.08997 * 109.46949 * 65.00432 * 10 8 2 39 39 H 1.09003 * 109.47005 * 304.99936 * 10 8 2 40 40 H 0.97003 * 119.99986 * 359.97438 * 11 10 8 41 41 H 1.08002 * 119.96548 * 0.02562 * 13 12 11 42 42 H 1.08000 * 119.92638 * 180.02562 * 14 13 12 43 43 H 1.07998 * 119.95619 * 179.97438 * 15 14 13 44 44 H 0.96996 * 120.00048 * 359.97438 * 21 20 18 45 45 H 1.08000 * 120.07157 * 0.05217 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0003 7 6 1.5301 -2.1638 1.2490 8 6 2.0400 -0.7213 1.2491 9 1 3.1300 -0.7217 1.2489 10 6 1.5300 -0.0002 2.4985 11 7 2.1142 -0.6178 3.6915 12 6 1.7941 -0.1276 4.9596 13 6 0.9217 0.9467 5.0905 14 6 0.6043 1.4317 6.3446 15 6 1.1521 0.8507 7.4722 16 6 2.0237 -0.2239 7.3482 17 8 2.5610 -0.7943 8.4568 18 6 3.4856 -1.7563 8.2634 19 1 3.7078 -2.0984 7.2634 20 6 4.1510 -2.3066 9.3481 21 7 3.8805 -1.8896 10.5663 22 14 5.4314 -3.6401 9.0801 23 1 6.5215 -3.1137 8.2199 24 1 4.7982 -4.8084 8.4175 25 1 5.9929 -4.0575 10.3900 26 6 2.3505 -0.7089 6.0899 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 -0.7216 -1.2491 31 1 1.6767 -0.2072 -2.1393 32 1 1.8930 -2.6773 -2.1397 33 1 0.4400 -2.1636 -1.2494 34 1 3.1300 -2.8850 -0.0003 35 1 1.6763 -3.9125 -0.0001 36 1 1.8931 -2.6780 2.1390 37 1 0.4400 -2.1638 1.2490 38 1 0.4437 -0.0771 2.5444 39 1 1.8184 1.0501 2.4549 40 1 2.7228 -1.3678 3.6008 41 1 0.4909 1.4021 4.2110 42 1 -0.0741 2.2662 6.4438 43 1 0.9023 1.2324 8.4510 44 1 3.2158 -1.1970 10.7054 45 1 3.0324 -1.5406 5.9908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394785860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:31 Heat of formation + Delta-G solvation = -52.816968 kcal Electronic energy + Delta-G solvation = -22838.314031 eV Core-core repulsion = 19626.012328 eV Total energy + Delta-G solvation = -3212.301703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99154 -40.41099 -38.68228 -36.13617 -34.23184 -33.13145 -32.39983 -30.71878 -29.58574 -27.79708 -26.84871 -26.10489 -23.48778 -23.24631 -22.57540 -21.81763 -20.10897 -19.48468 -18.81361 -17.47386 -16.72556 -16.63070 -16.33131 -16.09535 -15.76026 -15.52048 -15.51047 -15.04582 -14.88705 -14.65457 -14.27923 -14.13103 -13.64662 -13.54860 -13.14138 -12.93001 -12.79231 -12.54913 -12.43978 -12.32987 -12.28048 -12.13953 -11.94384 -11.93433 -11.75486 -11.37944 -11.09370 -10.98305 -10.88548 -10.79832 -10.60524 -9.19258 -8.93189 -8.27909 -6.23290 0.69470 0.85065 1.46995 1.60511 1.77786 2.36238 2.52985 2.90011 3.20004 3.40756 3.65873 3.75037 3.80076 4.14120 4.21109 4.29015 4.32117 4.36213 4.44783 4.47310 4.51796 4.53901 4.66878 4.70738 4.74642 4.79088 4.86523 4.94548 5.01312 5.04765 5.09432 5.12938 5.20187 5.26379 5.27223 5.29220 5.37765 5.42472 5.45259 5.49810 5.67591 5.71192 5.80609 5.93487 6.27433 6.56142 6.81987 6.89338 7.66905 8.51934 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.003565 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.761493 B = 7852.196232 C = 9184.818031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.084 4.084 9 H 0.070 0.930 10 C 0.132 3.868 11 N -0.743 5.743 12 C 0.256 3.744 13 C -0.262 4.262 14 C -0.025 4.025 15 C -0.264 4.264 16 C 0.155 3.845 17 O -0.253 6.253 18 C -0.485 4.485 19 H 0.088 0.912 20 C -0.046 4.046 21 N -0.919 5.919 22 Si 1.145 2.855 23 H -0.261 1.261 24 H -0.260 1.260 25 H -0.272 1.272 26 C -0.316 4.316 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.397 0.603 41 H 0.142 0.858 42 H 0.154 0.846 43 H 0.108 0.892 44 H 0.259 0.741 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 2.077 -26.817 27.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.103 4.103 9 H 0.089 0.911 10 C 0.009 3.991 11 N -0.372 5.372 12 C 0.152 3.848 13 C -0.285 4.285 14 C -0.044 4.044 15 C -0.285 4.285 16 C 0.104 3.896 17 O -0.160 6.160 18 C -0.561 4.561 19 H 0.106 0.894 20 C -0.241 4.241 21 N -0.554 5.554 22 Si 0.960 3.040 23 H -0.186 1.186 24 H -0.185 1.185 25 H -0.197 1.197 26 C -0.340 4.340 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.232 0.768 41 H 0.160 0.840 42 H 0.172 0.828 43 H 0.126 0.874 44 H 0.068 0.932 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.432 1.234 -25.961 26.366 hybrid contribution -0.825 0.724 -0.137 1.106 sum -5.257 1.958 -26.099 26.695 Atomic orbital electron populations 1.22007 0.94814 1.02256 1.02016 1.21026 0.96353 0.99088 0.93376 0.90711 1.21544 1.00486 0.95590 0.97275 1.21567 1.01129 0.95604 0.97383 1.21518 1.00624 0.98927 0.94507 1.21600 1.01093 0.94766 0.97826 1.21304 1.00359 0.95224 0.93438 0.91111 1.21529 0.97820 0.96646 0.83138 1.44751 1.52517 1.37929 1.02043 1.17579 0.91199 0.91410 0.84656 1.20582 1.07528 1.02127 0.98229 1.20848 0.95751 0.97315 0.90449 1.20269 1.07257 1.00921 1.00022 1.19524 0.92098 0.91649 0.86298 1.83651 1.52199 1.49766 1.30392 1.22554 1.18946 1.16806 0.97825 0.89446 1.28393 1.01853 1.03413 0.90490 1.70707 1.33053 1.29149 1.22503 0.82595 0.72513 0.71921 0.76925 1.18572 1.18483 1.19671 1.20526 1.12977 1.08852 0.91665 0.92716 0.91889 0.92142 0.92168 0.90942 0.91556 0.91497 0.92277 0.91983 0.93313 0.91576 0.91862 0.92276 0.76809 0.83990 0.82800 0.87400 0.93213 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.15 71.98 0.59 -1.31 16 2 C -0.08 -1.03 2.72 -10.79 -0.03 -1.06 16 3 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -1.29 5.45 30.60 0.17 -1.12 16 5 C -0.12 -1.42 5.65 30.59 0.17 -1.24 16 6 C -0.12 -1.70 5.92 30.59 0.18 -1.52 16 7 C -0.12 -1.95 4.80 30.59 0.15 -1.81 16 8 C -0.08 -1.38 2.00 -10.80 -0.02 -1.41 16 9 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.13 2.72 3.80 86.38 0.33 3.05 16 11 N -0.74 -20.91 5.46 -339.46 -1.85 -22.77 16 12 C 0.26 9.42 6.65 38.20 0.25 9.68 16 13 C -0.26 -8.64 9.31 22.44 0.21 -8.43 16 14 C -0.03 -0.88 10.03 22.23 0.22 -0.65 16 15 C -0.26 -11.80 9.99 22.42 0.22 -11.58 16 16 C 0.15 8.13 6.65 22.56 0.15 8.28 16 17 O -0.25 -15.71 9.16 -22.79 -0.21 -15.92 16 18 C -0.49 -29.53 9.49 67.92 0.64 -28.88 16 19 H 0.09 4.99 5.20 -2.91 -0.02 4.98 16 20 C -0.05 -2.72 5.49 84.83 0.47 -2.25 16 21 N -0.92 -59.16 13.70 21.61 0.30 -58.86 16 22 Si 1.14 49.49 29.92 68.60 2.05 51.54 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C -0.32 -14.70 9.01 22.52 0.20 -14.49 16 27 H 0.05 0.72 6.54 -2.39 -0.02 0.70 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.78 4.81 -2.39 -0.01 0.76 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.05 0.97 7.18 -2.38 -0.02 0.95 16 37 H 0.07 1.14 6.43 -2.39 -0.02 1.12 16 38 H 0.06 1.29 6.51 -2.39 -0.02 1.27 16 39 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 40 H 0.40 10.83 7.66 -92.71 -0.71 10.12 16 41 H 0.14 3.67 6.73 -2.91 -0.02 3.65 16 42 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 43 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.26 17.43 7.97 -92.71 -0.74 16.70 16 45 H 0.11 5.32 5.63 -2.91 -0.02 5.31 16 Total: -1.00 -72.35 344.96 4.50 -67.85 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.31 Total: 32.91 kcal Atomic # 6 Polarization: -58.66 SS G_CDS: 3.90 Total: -54.76 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.56 Total: -81.63 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.21 Total: -15.92 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.54 kcal Total: -72.35 4.50 -67.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394785860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.033 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds