Wall clock time and date at job start Tue Mar 31 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47270 * 2 1 4 4 C 1.53002 * 109.47143 * 240.00447 * 2 1 3 5 5 N 1.46894 * 109.47283 * 54.18639 * 4 2 1 6 6 C 1.46852 * 110.99861 * 201.55601 * 5 4 2 7 7 C 1.53040 * 109.52152 * 174.15976 * 6 5 4 8 8 C 1.53112 * 109.27791 * 59.17988 * 7 6 5 9 9 C 1.50704 * 109.57342 * 182.40876 * 8 7 6 10 10 H 1.08001 * 120.00255 * 119.71525 * 9 8 7 11 11 C 1.37881 * 119.99637 * 299.71573 * 9 8 7 12 12 N 1.31506 * 120.00116 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99635 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47162 * 89.99747 * 13 11 9 15 15 H 1.48503 * 109.46844 * 210.00035 * 13 11 9 16 16 H 1.48506 * 109.46931 * 329.99498 * 13 11 9 17 17 C 1.53115 * 109.16375 * 302.34411 * 8 7 6 18 18 C 1.46840 * 111.00412 * 77.34456 * 5 4 2 19 19 C 1.50703 * 109.47276 * 120.00014 * 2 1 3 20 20 C 1.38232 * 119.99474 * 89.72551 * 19 2 1 21 21 C 1.38238 * 119.99703 * 179.76988 * 20 19 2 22 22 C 1.38241 * 119.99769 * 0.50440 * 21 20 19 23 23 C 1.38232 * 119.99912 * 359.75022 * 22 21 20 24 24 C 1.38233 * 120.00035 * 270.00513 * 19 2 1 25 25 H 1.08997 * 109.47442 * 174.67734 * 1 2 3 26 26 H 1.08998 * 109.47088 * 294.68138 * 1 2 3 27 27 H 1.09002 * 109.46946 * 54.68129 * 1 2 3 28 28 H 0.96701 * 114.00533 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46588 * 294.18051 * 4 2 1 30 30 H 1.09001 * 109.46792 * 174.18703 * 4 2 1 31 31 H 1.08993 * 109.45986 * 294.17349 * 6 5 4 32 32 H 1.09002 * 109.46091 * 54.14191 * 6 5 4 33 33 H 1.09005 * 109.50252 * 299.23545 * 7 6 5 34 34 H 1.09000 * 109.50275 * 179.12257 * 7 6 5 35 35 H 1.09000 * 109.52359 * 62.25319 * 8 7 6 36 36 H 0.97010 * 119.99647 * 180.02562 * 12 11 9 37 37 H 1.09008 * 109.50327 * 297.71501 * 17 8 7 38 38 H 1.08996 * 109.53628 * 177.62039 * 17 8 7 39 39 H 1.09003 * 109.46400 * 305.85704 * 18 5 4 40 40 H 1.09008 * 109.46448 * 65.83494 * 18 5 4 41 41 H 1.07999 * 120.00547 * 0.02562 * 20 19 2 42 42 H 1.07991 * 120.00326 * 180.23312 * 21 20 19 43 43 H 1.07995 * 119.99934 * 179.72501 * 22 21 20 44 44 H 1.08001 * 119.99865 * 179.97438 * 23 22 21 45 45 H 1.07995 * 119.99953 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.4392 -0.1144 -2.4446 6 6 1.4740 -1.0440 -3.5808 7 6 0.7132 -0.4370 -4.7618 8 6 1.3603 0.8957 -5.1487 9 6 0.5806 1.5280 -6.2727 10 1 0.1261 2.4981 -6.1359 11 6 0.4475 0.8679 -7.4759 12 7 1.0014 -0.3132 -7.6427 13 14 -0.5183 1.6519 -8.8695 14 1 0.3952 2.4727 -9.7044 15 1 -1.1322 0.5891 -9.7055 16 1 -1.5858 2.5172 -8.3064 17 6 1.3548 1.8283 -3.9343 18 6 2.0969 1.1556 -2.7773 19 6 2.0323 -0.7104 1.2305 20 6 2.2573 -2.0739 1.1978 21 6 2.7227 -2.7248 2.3250 22 6 2.9531 -2.0139 3.4880 23 6 2.7231 -0.6513 3.5221 24 6 2.2627 0.0005 2.3934 25 1 -0.3634 -1.0232 -0.0953 26 1 -0.3633 0.4291 0.9338 27 1 -0.3633 0.5941 -0.8385 28 1 2.9703 1.4237 0.0004 29 1 1.7642 -1.7745 -1.1987 30 1 3.1250 -0.6319 -1.3028 31 1 2.5091 -1.2252 -3.8701 32 1 1.0072 -1.9862 -3.2936 33 1 -0.3255 -0.2684 -4.4775 34 1 0.7526 -1.1205 -5.6100 35 1 2.3872 0.7223 -5.4702 36 1 0.9080 -0.7774 -8.4894 37 1 0.3262 2.0327 -3.6370 38 1 1.8520 2.7637 -4.1909 39 1 2.0824 1.8112 -1.9065 40 1 3.1291 0.9642 -3.0706 41 1 2.0735 -2.6300 0.2904 42 1 2.9020 -3.7894 2.2985 43 1 3.3124 -2.5231 4.3700 44 1 2.9027 -0.0959 4.4309 45 1 2.0830 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397347530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:06 Heat of formation + Delta-G solvation = -28.233986 kcal Electronic energy + Delta-G solvation = -23574.788520 eV Core-core repulsion = 20363.552815 eV Total energy + Delta-G solvation = -3211.235705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13600 -38.31238 -36.70663 -33.80027 -32.55836 -31.10286 -30.92465 -29.70718 -29.13882 -26.69492 -24.70950 -23.13579 -22.46751 -22.00568 -21.23086 -20.01969 -18.52629 -17.67096 -16.41774 -16.30623 -15.45113 -15.11758 -14.97459 -14.65527 -14.43586 -13.94808 -13.76625 -13.44511 -13.11951 -12.91193 -12.57203 -12.35263 -12.25841 -12.14973 -11.94850 -11.90771 -11.39578 -11.26494 -11.02844 -10.93326 -10.74957 -10.67482 -10.43924 -10.16207 -9.98850 -9.78370 -9.37801 -9.07116 -8.92039 -8.71937 -8.63906 -8.24114 -7.66244 -5.92961 -3.97822 1.17701 1.25076 3.33953 3.40527 3.44560 3.62371 4.15906 4.33222 4.49039 4.76734 4.77498 4.85666 5.01934 5.06981 5.20427 5.34227 5.37354 5.42867 5.63856 5.79772 5.81090 5.88383 5.93112 5.98718 6.04055 6.12299 6.21338 6.30843 6.31354 6.35545 6.43529 6.51397 6.58573 6.64734 6.74434 6.84611 6.98186 7.16736 7.23036 7.49382 7.67305 7.69419 7.76839 7.88802 8.11373 8.21460 8.54276 9.06137 9.66300 11.13131 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040927 B = 0.003298 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.978058 B = 8487.765721 C = 8818.170905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.180 3.820 3 O -0.544 6.544 4 C 0.030 3.970 5 N -0.524 5.524 6 C 0.056 3.944 7 C -0.102 4.102 8 C 0.047 3.953 9 C -0.508 4.508 10 H 0.054 0.946 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.889 3.111 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.104 4.104 18 C 0.047 3.953 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.104 4.104 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.371 0.629 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.019 0.981 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.018 0.982 36 H 0.258 0.742 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.015 0.985 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -3.736 20.517 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.139 3.861 3 O -0.349 6.349 4 C -0.099 4.099 5 N -0.248 5.248 6 C -0.071 4.071 7 C -0.141 4.141 8 C 0.029 3.971 9 C -0.546 4.546 10 H 0.072 0.928 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.717 3.283 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.142 4.142 18 C -0.080 4.080 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.122 4.122 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.218 0.782 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.033 0.967 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.937 -3.648 20.458 20.988 hybrid contribution 1.062 -0.153 -0.970 1.446 sum 3.999 -3.801 19.488 20.254 Atomic orbital electron populations 1.21549 0.90965 1.02539 1.02605 1.20044 0.95658 0.81154 0.89216 1.86594 1.26193 1.25918 1.96223 1.22792 0.96538 0.98696 0.91850 1.61922 1.54600 1.04741 1.03569 1.22315 0.98643 0.94299 0.91865 1.21638 0.97546 1.00327 0.94562 1.18681 0.96089 0.91279 0.91057 1.21237 1.32720 1.03642 0.97033 0.92798 1.24971 0.95741 0.94944 0.98423 1.69880 1.44999 1.13635 1.24748 0.86647 0.80313 0.78981 0.82362 1.20851 1.21339 1.19949 1.21642 0.99281 0.98174 0.95122 1.22486 0.94628 0.91114 0.99800 1.20682 0.99454 0.94449 0.96430 1.21187 0.99080 0.94149 0.98670 1.21152 0.99784 0.99863 0.93192 1.21156 1.00561 0.94518 0.98031 1.21154 0.99947 0.94713 0.98326 1.21036 0.98567 1.00498 0.92120 0.91743 0.93219 0.89622 0.78235 0.90493 0.95009 0.96225 0.92919 0.93849 0.89107 0.96383 0.93190 0.92622 0.93491 0.89540 0.96721 0.85682 0.86143 0.86350 0.86215 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 8.50 37.16 0.32 -1.28 16 2 C 0.18 2.27 1.00 -91.77 -0.09 2.18 16 3 O -0.54 -6.90 9.14 -35.23 -0.32 -7.23 16 4 C 0.03 0.42 3.83 -3.83 -0.01 0.41 16 5 N -0.52 -9.12 3.67 -234.67 -0.86 -9.98 16 6 C 0.06 1.10 5.42 -3.83 -0.02 1.07 16 7 C -0.10 -2.43 5.12 -26.65 -0.14 -2.57 16 8 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 9 C -0.51 -14.16 8.57 -34.44 -0.29 -14.46 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 12 N -0.89 -25.69 11.37 55.43 0.63 -25.06 16 13 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.10 -2.25 5.32 -26.65 -0.14 -2.39 16 18 C 0.05 0.86 5.21 -3.84 -0.02 0.84 16 19 C -0.11 -1.24 4.80 -104.62 -0.50 -1.74 16 20 C -0.11 -1.21 9.14 -39.58 -0.36 -1.57 16 21 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 24 C -0.10 -1.09 9.35 -39.58 -0.37 -1.46 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.34 7.65 -51.93 -0.40 0.94 16 28 H 0.37 3.72 8.99 45.56 0.41 4.13 16 29 H 0.08 1.01 5.79 -51.93 -0.30 0.71 16 30 H 0.03 0.44 7.98 -51.93 -0.41 0.03 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.44 5.23 -51.93 -0.27 1.16 16 40 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 41 H 0.13 1.26 6.04 -52.49 -0.32 0.94 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.13 1.28 7.48 -52.49 -0.39 0.89 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -29.48 347.52 -10.07 -39.55 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.61 Total: 3.94 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -3.12 Total: -23.01 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.23 Total: -35.03 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.32 Total: -7.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.48 -10.07 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397347530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.312 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds