Wall clock time and date at job start Tue Mar 31 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42911 * 109.47034 * 2 1 4 4 C 1.52993 * 109.47414 * 120.00178 * 2 1 3 5 5 N 1.46898 * 109.47325 * 306.84579 * 4 2 1 6 6 C 1.46849 * 111.00116 * 168.23478 * 5 4 2 7 7 C 1.53036 * 109.52624 * 185.84089 * 6 5 4 8 8 C 1.53125 * 109.27397 * 300.82097 * 7 6 5 9 9 C 1.50700 * 109.57162 * 177.58985 * 8 7 6 10 10 H 1.08008 * 120.00023 * 240.28670 * 9 8 7 11 11 C 1.37874 * 120.00526 * 60.28341 * 9 8 7 12 12 N 1.31521 * 119.99665 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00656 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46713 * 60.00066 * 13 11 9 15 15 H 1.48493 * 109.47498 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46976 * 300.00416 * 13 11 9 17 17 C 1.53113 * 109.16056 * 57.65501 * 8 7 6 18 18 C 1.46849 * 111.00155 * 292.44294 * 5 4 2 19 19 C 1.50703 * 109.47114 * 240.00462 * 2 1 3 20 20 C 1.38226 * 119.99956 * 269.72489 * 19 2 1 21 21 C 1.38237 * 120.00321 * 179.78567 * 20 19 2 22 22 C 1.38243 * 119.99436 * 0.43909 * 21 20 19 23 23 C 1.38237 * 119.99970 * 359.81507 * 22 21 20 24 24 C 1.38232 * 119.99987 * 359.97438 * 23 22 21 25 25 H 1.08994 * 109.47295 * 65.51647 * 1 2 3 26 26 H 1.08998 * 109.46992 * 185.52350 * 1 2 3 27 27 H 1.09004 * 109.46651 * 305.51315 * 1 2 3 28 28 H 0.96695 * 113.99920 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46997 * 66.84767 * 4 2 1 30 30 H 1.09005 * 109.47232 * 186.84580 * 4 2 1 31 31 H 1.09000 * 109.46182 * 305.85557 * 6 5 4 32 32 H 1.09004 * 109.46369 * 65.82217 * 6 5 4 33 33 H 1.08999 * 109.50667 * 180.88445 * 7 6 5 34 34 H 1.08997 * 109.50053 * 60.75691 * 7 6 5 35 35 H 1.09001 * 109.52568 * 297.74357 * 8 7 6 36 36 H 0.97000 * 120.00145 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.50040 * 182.40163 * 17 8 7 38 38 H 1.09000 * 109.53950 * 62.30321 * 17 8 7 39 39 H 1.09005 * 109.46524 * 294.17891 * 18 5 4 40 40 H 1.09006 * 109.46119 * 54.15535 * 18 5 4 41 41 H 1.07999 * 119.99897 * 359.97438 * 20 19 2 42 42 H 1.07999 * 120.00757 * 180.27305 * 21 20 19 43 43 H 1.07998 * 119.99747 * 179.82901 * 22 21 20 44 44 H 1.08000 * 119.99503 * 179.97438 * 23 22 21 45 45 H 1.07997 * 119.99574 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.4203 -0.1307 2.4429 6 6 1.6622 -0.9635 3.6280 7 6 0.8838 -0.3980 4.8181 8 6 1.3374 1.0408 5.0810 9 6 0.5334 1.6245 6.2141 10 1 -0.0729 2.5031 6.0496 11 6 0.5715 1.0370 7.4608 12 7 1.3100 -0.0327 7.6613 13 14 -0.4245 1.7609 8.8655 14 1 -1.8657 1.7496 8.5076 15 1 -0.2122 0.9509 10.0918 16 1 0.0129 3.1581 9.1138 17 6 1.1196 1.8754 3.8160 18 6 1.8911 1.2440 2.6550 19 6 2.0323 -0.7103 -1.2305 20 6 2.2681 -2.0719 -1.1948 21 6 2.7247 -2.7243 -2.3247 22 6 2.9541 -2.0133 -3.4880 23 6 2.7233 -0.6508 -3.5222 24 6 2.2626 0.0007 -2.3934 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0229 0.0989 27 1 -0.3633 0.5970 0.8365 28 1 2.9703 1.4237 -0.0004 29 1 1.7802 -1.7782 1.1899 30 1 3.1232 -0.6164 1.3125 31 1 1.3315 -1.9829 3.4292 32 1 2.7275 -0.9660 3.8589 33 1 1.0760 -1.0072 5.7013 34 1 -0.1826 -0.4080 4.5933 35 1 2.3952 1.0470 5.3440 36 1 1.3372 -0.4459 8.5385 37 1 1.4801 2.8905 3.9832 38 1 0.0569 1.9018 3.5751 39 1 2.9554 1.2312 2.8904 40 1 1.7265 1.8280 1.7494 41 1 2.0927 -2.6265 -0.2848 42 1 2.9047 -3.7888 -2.2981 43 1 3.3134 -2.5225 -4.3700 44 1 2.9029 -0.0954 -4.4308 45 1 2.0827 1.0653 -2.4201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397347536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:08 Heat of formation + Delta-G solvation = -25.378840 kcal Electronic energy + Delta-G solvation = -23604.476802 eV Core-core repulsion = 20393.364905 eV Total energy + Delta-G solvation = -3211.111897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18336 -38.34255 -36.69149 -33.79372 -32.57567 -31.10509 -30.92302 -29.72729 -29.08564 -26.71898 -24.70547 -23.14312 -22.46738 -21.99506 -21.21835 -20.01573 -18.50465 -17.72168 -16.43563 -16.29969 -15.48144 -15.13767 -14.95790 -14.65817 -14.44703 -13.96420 -13.73834 -13.43646 -13.12667 -12.94905 -12.58651 -12.31224 -12.24371 -12.16209 -12.01333 -11.93591 -11.42580 -11.26012 -11.02949 -10.90265 -10.73490 -10.62626 -10.44671 -10.15769 -9.97595 -9.76790 -9.36316 -9.07728 -8.92424 -8.66070 -8.61280 -8.22725 -7.66089 -5.92073 -3.97103 1.16887 1.24476 3.36031 3.40168 3.43401 3.61624 4.15496 4.30745 4.49549 4.75151 4.76848 4.84887 5.01231 5.04654 5.20592 5.33349 5.37872 5.42504 5.64339 5.80495 5.80803 5.88984 5.94348 6.00219 6.04289 6.11644 6.23063 6.30612 6.33855 6.35505 6.42595 6.55602 6.57421 6.66468 6.78648 6.83855 7.01805 7.18133 7.24112 7.50425 7.64001 7.69797 7.78410 7.89740 8.12519 8.22470 8.55187 9.06715 9.66906 11.13959 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041525 B = 0.003304 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.130671 B = 8473.177082 C = 8812.444356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.179 3.821 3 O -0.543 6.543 4 C 0.031 3.969 5 N -0.525 5.525 6 C 0.056 3.944 7 C -0.102 4.102 8 C 0.048 3.952 9 C -0.509 4.509 10 H 0.053 0.947 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.278 1.278 17 C -0.104 4.104 18 C 0.037 3.963 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.104 4.104 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.372 0.628 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.019 0.981 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.018 0.982 36 H 0.259 0.741 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.013 0.987 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 -4.186 -20.683 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.138 3.862 3 O -0.349 6.349 4 C -0.098 4.098 5 N -0.249 5.249 6 C -0.071 4.071 7 C -0.140 4.140 8 C 0.029 3.971 9 C -0.547 4.547 10 H 0.071 0.929 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.717 3.283 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.142 4.142 18 C -0.090 4.090 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.122 4.122 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.219 0.781 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.118 0.882 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.470 -4.168 -20.588 21.150 hybrid contribution 1.092 -0.036 0.960 1.454 sum 3.562 -4.204 -19.628 20.387 Atomic orbital electron populations 1.21565 0.90852 1.02705 1.02559 1.20047 0.95727 0.81090 0.89359 1.86564 1.26415 1.26007 1.95921 1.22783 0.96294 0.99034 0.91686 1.61992 1.57605 1.02945 1.02364 1.22292 0.98152 0.95402 0.91288 1.21636 0.97548 1.00071 0.94795 1.18680 0.96303 0.91204 0.90906 1.21207 1.27280 1.11922 0.94292 0.92863 1.24972 0.95508 0.95038 0.98553 1.69873 1.40111 1.20646 1.22672 0.86704 0.80759 0.79077 0.81712 1.20323 1.21426 1.20411 1.21645 0.99246 0.98118 0.95226 1.22693 0.95908 0.89316 1.01082 1.20644 0.99500 0.94476 0.96358 1.21197 0.99038 0.94162 0.98663 1.21155 0.99820 0.99857 0.93151 1.21162 1.00503 0.94518 0.98057 1.21154 0.99944 0.94718 0.98322 1.21037 0.98562 1.00481 0.92139 0.93173 0.91592 0.89685 0.78066 0.90371 0.95284 0.92986 0.96244 0.89131 0.93883 0.96405 0.93137 0.93538 0.92735 0.96866 0.88227 0.85624 0.86128 0.86340 0.86204 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.48 37.16 0.32 -1.26 16 2 C 0.18 2.22 0.92 -91.77 -0.08 2.14 16 3 O -0.54 -6.78 8.66 -35.23 -0.31 -7.08 16 4 C 0.03 0.43 3.82 -3.83 -0.01 0.42 16 5 N -0.52 -9.16 3.70 -234.67 -0.87 -10.03 16 6 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 7 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 8 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 9 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 10 H 0.05 1.48 7.75 -52.48 -0.41 1.07 16 11 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 12 N -0.89 -25.79 11.37 55.43 0.63 -25.16 16 13 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 C -0.10 -2.26 5.32 -26.66 -0.14 -2.40 16 18 C 0.04 0.68 5.08 -3.83 -0.02 0.66 16 19 C -0.11 -1.22 4.81 -104.63 -0.50 -1.72 16 20 C -0.11 -1.19 9.14 -39.59 -0.36 -1.56 16 21 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.10 -1.08 9.35 -39.58 -0.37 -1.45 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.31 7.63 -51.93 -0.40 0.91 16 28 H 0.37 3.69 9.04 45.56 0.41 4.10 16 29 H 0.08 1.02 5.92 -51.93 -0.31 0.72 16 30 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.05 0.93 8.00 -51.93 -0.42 0.52 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 2.41 6.18 -51.93 -0.32 2.09 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.10 1.67 4.87 -51.93 -0.25 1.42 16 41 H 0.13 1.26 6.01 -52.49 -0.32 0.94 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.13 1.27 7.48 -52.49 -0.39 0.87 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -29.56 346.86 -10.06 -39.62 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.60 Total: 4.04 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.12 Total: -23.21 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.24 Total: -35.19 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.31 Total: -7.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.56 -10.06 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397347536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.242 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds