Wall clock time and date at job start Tue Mar 31 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42911 * 109.47034 * 2 1 4 4 C 1.52993 * 109.47414 * 120.00178 * 2 1 3 5 5 N 1.46898 * 109.47325 * 306.84579 * 4 2 1 6 6 C 1.46849 * 111.00116 * 168.23478 * 5 4 2 7 7 C 1.53036 * 109.52624 * 185.84089 * 6 5 4 8 8 C 1.53125 * 109.27397 * 300.82097 * 7 6 5 9 9 C 1.50700 * 109.57162 * 177.58985 * 8 7 6 10 10 H 1.08008 * 120.00023 * 240.28670 * 9 8 7 11 11 C 1.37874 * 120.00526 * 60.28341 * 9 8 7 12 12 N 1.31521 * 119.99665 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00656 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46713 * 60.00066 * 13 11 9 15 15 H 1.48493 * 109.47498 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46976 * 300.00416 * 13 11 9 17 17 C 1.53113 * 109.16056 * 57.65501 * 8 7 6 18 18 C 1.46849 * 111.00155 * 292.44294 * 5 4 2 19 19 C 1.50703 * 109.47114 * 240.00462 * 2 1 3 20 20 C 1.38226 * 119.99956 * 269.72489 * 19 2 1 21 21 C 1.38237 * 120.00321 * 179.78567 * 20 19 2 22 22 C 1.38243 * 119.99436 * 0.43909 * 21 20 19 23 23 C 1.38237 * 119.99970 * 359.81507 * 22 21 20 24 24 C 1.38232 * 119.99987 * 359.97438 * 23 22 21 25 25 H 1.08994 * 109.47295 * 65.51647 * 1 2 3 26 26 H 1.08998 * 109.46992 * 185.52350 * 1 2 3 27 27 H 1.09004 * 109.46651 * 305.51315 * 1 2 3 28 28 H 0.96695 * 113.99920 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46997 * 66.84767 * 4 2 1 30 30 H 1.09005 * 109.47232 * 186.84580 * 4 2 1 31 31 H 1.09000 * 109.46182 * 305.85557 * 6 5 4 32 32 H 1.09004 * 109.46369 * 65.82217 * 6 5 4 33 33 H 1.08999 * 109.50667 * 180.88445 * 7 6 5 34 34 H 1.08997 * 109.50053 * 60.75691 * 7 6 5 35 35 H 1.09001 * 109.52568 * 297.74357 * 8 7 6 36 36 H 0.97000 * 120.00145 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.50040 * 182.40163 * 17 8 7 38 38 H 1.09000 * 109.53950 * 62.30321 * 17 8 7 39 39 H 1.09005 * 109.46524 * 294.17891 * 18 5 4 40 40 H 1.09006 * 109.46119 * 54.15535 * 18 5 4 41 41 H 1.07999 * 119.99897 * 359.97438 * 20 19 2 42 42 H 1.07999 * 120.00757 * 180.27305 * 21 20 19 43 43 H 1.07998 * 119.99747 * 179.82901 * 22 21 20 44 44 H 1.08000 * 119.99503 * 179.97438 * 23 22 21 45 45 H 1.07997 * 119.99574 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.4203 -0.1307 2.4429 6 6 1.6622 -0.9635 3.6280 7 6 0.8838 -0.3980 4.8181 8 6 1.3374 1.0408 5.0810 9 6 0.5334 1.6245 6.2141 10 1 -0.0729 2.5031 6.0496 11 6 0.5715 1.0370 7.4608 12 7 1.3100 -0.0327 7.6613 13 14 -0.4245 1.7609 8.8655 14 1 -1.8657 1.7496 8.5076 15 1 -0.2122 0.9509 10.0918 16 1 0.0129 3.1581 9.1138 17 6 1.1196 1.8754 3.8160 18 6 1.8911 1.2440 2.6550 19 6 2.0323 -0.7103 -1.2305 20 6 2.2681 -2.0719 -1.1948 21 6 2.7247 -2.7243 -2.3247 22 6 2.9541 -2.0133 -3.4880 23 6 2.7233 -0.6508 -3.5222 24 6 2.2626 0.0007 -2.3934 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0229 0.0989 27 1 -0.3633 0.5970 0.8365 28 1 2.9703 1.4237 -0.0004 29 1 1.7802 -1.7782 1.1899 30 1 3.1232 -0.6164 1.3125 31 1 1.3315 -1.9829 3.4292 32 1 2.7275 -0.9660 3.8589 33 1 1.0760 -1.0072 5.7013 34 1 -0.1826 -0.4080 4.5933 35 1 2.3952 1.0470 5.3440 36 1 1.3372 -0.4459 8.5385 37 1 1.4801 2.8905 3.9832 38 1 0.0569 1.9018 3.5751 39 1 2.9554 1.2312 2.8904 40 1 1.7265 1.8280 1.7494 41 1 2.0927 -2.6265 -0.2848 42 1 2.9047 -3.7888 -2.2981 43 1 3.3134 -2.5225 -4.3700 44 1 2.9029 -0.0954 -4.4308 45 1 2.0827 1.0653 -2.4201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397347536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:07 Heat of formation + Delta-G solvation = -42.389490 kcal Electronic energy + Delta-G solvation = -23605.214439 eV Core-core repulsion = 20393.364905 eV Total energy + Delta-G solvation = -3211.849534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13845 -39.58921 -37.89808 -35.50578 -33.85470 -32.63155 -31.73022 -31.37411 -30.11772 -28.29559 -26.31820 -24.10604 -23.68756 -23.48299 -22.63014 -20.98231 -20.31559 -18.65488 -18.35717 -17.29987 -16.78084 -16.43100 -16.14062 -16.08899 -15.49116 -15.08022 -15.04373 -14.78348 -14.48238 -14.19692 -14.01111 -13.89285 -13.66041 -13.34477 -13.14341 -12.94500 -12.82742 -12.74636 -12.64078 -12.23954 -12.22898 -12.03977 -11.95778 -11.83272 -11.60427 -11.33050 -11.15466 -10.65262 -10.44127 -10.20687 -9.79170 -9.64178 -9.10175 -8.07169 -6.20767 0.43416 0.53062 1.40853 1.42415 1.50011 2.44038 2.87936 2.99701 3.19040 3.29786 3.75957 3.88462 4.09989 4.17162 4.20385 4.30538 4.32034 4.38685 4.46745 4.50622 4.65903 4.69976 4.77712 4.80979 4.85854 4.93503 5.00244 5.02283 5.05726 5.15412 5.19273 5.23776 5.34924 5.40102 5.45847 5.57426 5.60444 5.63781 5.65547 5.69944 6.02327 6.05725 6.13679 6.34555 6.38393 6.42574 6.78818 6.90706 7.46711 8.96948 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041525 B = 0.003304 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.130671 B = 8473.177082 C = 8812.444356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.188 3.812 3 O -0.553 6.553 4 C 0.033 3.967 5 N -0.527 5.527 6 C 0.067 3.933 7 C -0.093 4.093 8 C 0.045 3.955 9 C -0.534 4.534 10 H 0.049 0.951 11 C 0.012 3.988 12 N -0.918 5.918 13 Si 0.953 3.047 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.273 1.273 17 C -0.098 4.098 18 C 0.049 3.951 19 C -0.119 4.119 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.113 4.113 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.384 0.616 29 H 0.091 0.909 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.010 0.990 33 H 0.060 0.940 34 H 0.030 0.970 35 H -0.016 1.016 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.008 0.992 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -4.578 -22.710 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.147 3.853 3 O -0.361 6.361 4 C -0.095 4.095 5 N -0.252 5.252 6 C -0.061 4.061 7 C -0.131 4.131 8 C 0.026 3.974 9 C -0.572 4.572 10 H 0.067 0.933 11 C -0.187 4.187 12 N -0.558 5.558 13 Si 0.779 3.221 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.198 1.198 17 C -0.136 4.136 18 C -0.078 4.078 19 C -0.120 4.120 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.233 0.767 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.002 0.998 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.606 -4.555 -22.633 23.234 hybrid contribution 1.083 0.071 1.536 1.880 sum 3.688 -4.484 -21.097 21.882 Atomic orbital electron populations 1.21530 0.91590 1.02573 1.01834 1.19854 0.95123 0.81035 0.89272 1.86503 1.27659 1.26099 1.95802 1.22879 0.96353 0.99799 0.90487 1.61923 1.58312 1.02339 1.02593 1.22064 0.96772 0.96516 0.90749 1.21388 0.97249 0.98880 0.95621 1.18651 0.93758 0.92828 0.92114 1.21580 1.27812 1.12136 0.95719 0.93309 1.25749 0.96520 0.95387 1.01009 1.70014 1.41048 1.21532 1.23180 0.85691 0.79367 0.78468 0.78605 1.19687 1.20835 1.19780 1.21527 0.99338 0.97829 0.94917 1.22597 0.94863 0.90016 1.00369 1.20473 1.00801 0.94762 0.95959 1.21316 0.99588 0.94035 0.99389 1.21436 0.99236 1.00944 0.92912 1.21510 0.99570 0.94541 0.98721 1.21444 0.99205 0.95166 0.98670 1.21130 0.98901 1.00663 0.92362 0.92484 0.91119 0.92092 0.76697 0.89122 0.94847 0.90861 0.97137 0.92190 0.95121 0.99807 0.93101 0.93570 0.93447 0.97327 0.86120 0.85459 0.84292 0.83982 0.84176 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 8.48 71.98 0.61 -2.37 16 2 C 0.19 4.38 0.92 -11.54 -0.01 4.37 16 3 O -0.55 -12.86 8.66 -148.98 -1.29 -14.15 16 4 C 0.03 0.87 3.82 86.30 0.33 1.20 16 5 N -0.53 -18.06 3.70 -896.36 -3.32 -21.38 16 6 C 0.07 2.63 5.46 86.33 0.47 3.10 16 7 C -0.09 -4.58 5.12 30.65 0.16 -4.42 16 8 C 0.05 2.36 2.16 -11.46 -0.02 2.34 16 9 C -0.53 -30.74 8.56 25.60 0.22 -30.52 16 10 H 0.05 2.77 7.75 -2.91 -0.02 2.75 16 11 C 0.01 0.66 5.31 84.65 0.45 1.11 16 12 N -0.92 -54.33 11.37 21.45 0.24 -54.09 16 13 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C -0.10 -4.33 5.32 30.64 0.16 -4.16 16 18 C 0.05 1.76 5.08 86.32 0.44 2.19 16 19 C -0.12 -2.44 4.81 -19.87 -0.10 -2.53 16 20 C -0.13 -2.39 9.14 22.27 0.20 -2.18 16 21 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 22 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 23 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 24 C -0.11 -2.09 9.35 22.27 0.21 -1.88 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.83 7.63 -2.39 -0.02 1.81 16 28 H 0.38 6.89 9.04 -74.06 -0.67 6.22 16 29 H 0.09 2.19 5.92 -2.39 -0.01 2.17 16 30 H 0.03 0.88 8.11 -2.38 -0.02 0.86 16 31 H 0.07 2.57 8.00 -2.39 -0.02 2.55 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 3.31 6.18 -2.39 -0.01 3.29 16 34 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 35 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.12 3.91 4.87 -2.38 -0.01 3.90 16 41 H 0.13 2.29 6.01 -2.91 -0.02 2.27 16 42 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 45 H 0.13 2.31 7.48 -2.91 -0.02 2.29 16 Total: -1.00 -64.48 346.86 1.75 -62.73 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.30 Total: 18.98 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.79 Total: -38.95 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -3.07 Total: -75.46 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.29 Total: -14.15 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.48 1.75 -62.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397347536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.340 kcal (2) G-P(sol) polarization free energy of solvation -64.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds