Wall clock time and date at job start Tue Mar 31 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47293 * 2 1 4 4 H 1.09002 * 109.46913 * 55.24763 * 3 2 1 5 5 N 1.46503 * 109.47434 * 295.24857 * 3 2 1 6 6 C 1.39782 * 119.99906 * 111.46037 * 5 3 2 7 7 C 1.38948 * 120.01027 * 351.37822 * 6 5 3 8 8 C 1.38010 * 119.99398 * 179.76752 * 7 6 5 9 9 C 1.38896 * 120.00855 * 0.51128 * 8 7 6 10 10 O 1.35790 * 119.99674 * 179.76560 * 9 8 7 11 11 C 1.34816 * 117.00307 * 185.34287 * 10 9 8 12 12 H 1.08003 * 119.99647 * 5.20800 * 11 10 9 13 13 C 1.38617 * 120.00114 * 185.21112 * 11 10 9 14 14 N 1.31578 * 120.00191 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99939 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46889 * 90.00227 * 15 13 11 17 17 H 1.48499 * 109.47043 * 210.00005 * 15 13 11 18 18 H 1.48497 * 109.47099 * 330.00075 * 15 13 11 19 19 C 1.38900 * 120.01038 * 359.74538 * 9 8 7 20 20 C 1.38014 * 120.00568 * 0.02562 * 19 9 8 21 21 C 1.52993 * 109.47522 * 175.24358 * 3 2 1 22 22 H 1.09007 * 115.54671 * 331.19874 * 21 3 2 23 23 C 1.53081 * 117.53117 * 116.90443 * 21 3 2 24 24 C 1.52999 * 117.50285 * 185.52367 * 21 3 2 25 25 C 1.52998 * 117.49612 * 359.97438 * 24 21 3 26 26 C 1.52997 * 117.49844 * 144.97897 * 24 21 3 27 27 H 1.08997 * 109.46966 * 185.04736 * 1 2 3 28 28 H 1.08996 * 109.47063 * 305.04447 * 1 2 3 29 29 H 1.08998 * 109.47087 * 65.04627 * 1 2 3 30 30 H 1.08999 * 109.46699 * 240.00626 * 2 1 3 31 31 H 1.08998 * 109.47230 * 120.00508 * 2 1 3 32 32 H 0.96997 * 119.99968 * 291.46943 * 5 3 2 33 33 H 1.07999 * 119.99874 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.99516 * 180.23221 * 8 7 6 35 35 H 0.97002 * 120.00327 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.99970 * 179.97438 * 19 9 8 37 37 H 1.07999 * 120.00361 * 180.02562 * 20 19 9 38 38 H 1.08996 * 117.51438 * 359.97438 * 23 21 3 39 39 H 1.09003 * 117.49111 * 214.95631 * 23 21 3 40 40 H 1.09006 * 109.46927 * 180.08552 * 25 24 21 41 41 H 1.09005 * 109.46804 * 60.09400 * 25 24 21 42 42 H 1.08995 * 109.47798 * 300.08909 * 25 24 21 43 43 H 1.09005 * 109.47009 * 299.90792 * 26 24 21 44 44 H 1.08996 * 109.47535 * 59.91535 * 26 24 21 45 45 H 1.09007 * 109.46740 * 179.91518 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9803 0.8444 5 7 1.6474 2.0993 -1.2493 6 6 0.6980 3.1251 -1.2311 7 6 -0.0040 3.4018 -0.0643 8 6 -0.9379 4.4177 -0.0455 9 6 -1.1838 5.1567 -1.1955 10 8 -2.1061 6.1531 -1.1780 11 6 -2.3768 6.7574 -2.3523 12 1 -1.9319 6.3884 -3.2647 13 6 -3.2261 7.8523 -2.3889 14 7 -3.7677 8.3022 -1.2773 15 14 -3.6006 8.6900 -4.0160 16 1 -4.7930 8.0578 -4.6353 17 1 -3.8707 10.1311 -3.7802 18 1 -2.4358 8.5471 -4.9259 19 6 -0.4861 4.8768 -2.3635 20 6 0.4513 3.8640 -2.3817 21 6 3.5653 1.4442 0.1196 22 1 3.9960 0.5963 0.6524 23 6 4.3660 2.0255 -1.0484 24 6 4.2608 2.7988 0.2677 25 6 3.3779 4.0482 0.2842 26 6 5.5074 2.8599 1.1526 27 1 -0.3633 -1.0237 0.0904 28 1 -0.3633 0.5901 0.8413 29 1 -0.3633 0.4335 -0.9317 30 1 1.8932 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0462 1.8224 -2.0890 33 1 0.1843 2.8245 0.8289 34 1 -1.4808 4.6353 0.8625 35 1 -4.3623 9.0682 -1.3029 36 1 -0.6778 5.4512 -3.2578 37 1 0.9941 3.6467 -3.2898 38 1 3.8061 2.4065 -1.9025 39 1 5.3231 1.5600 -1.2835 40 1 4.0037 4.9340 0.3929 41 1 2.6819 3.9902 1.1211 42 1 2.8190 4.1106 -0.6495 43 1 5.2477 2.5584 2.1674 44 1 6.2675 2.1864 0.7567 45 1 5.8952 3.8786 1.1642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397661398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:27 Heat of formation + Delta-G solvation = 19.415402 kcal Electronic energy + Delta-G solvation = -23336.772446 eV Core-core repulsion = 20127.602974 eV Total energy + Delta-G solvation = -3209.169473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.85646 -38.58465 -36.72065 -34.91258 -32.40271 -31.70102 -30.11834 -29.55830 -27.50663 -27.23732 -26.09726 -24.89583 -22.46280 -21.80571 -21.06413 -19.75538 -18.82328 -17.68615 -17.17679 -16.35401 -15.51843 -15.34956 -14.47923 -14.36126 -14.12755 -13.82597 -13.74416 -13.50029 -13.32471 -13.16511 -12.72090 -12.43136 -12.41722 -12.21386 -12.07529 -11.85683 -11.77312 -11.53253 -11.36886 -11.22168 -11.09248 -10.93166 -10.85692 -10.73952 -10.49302 -10.32115 -9.83863 -9.49931 -9.23176 -9.05662 -8.40261 -8.13382 -6.34600 -6.30875 -3.87498 2.23615 2.60756 3.19774 3.20173 3.24692 3.59953 3.95781 4.07693 4.49642 4.69463 4.77772 4.83915 5.06097 5.12605 5.16842 5.24029 5.25431 5.42843 5.54781 5.60103 5.61985 5.69523 5.70883 5.80994 5.84889 5.86781 5.89448 5.99019 6.05453 6.09340 6.10288 6.21040 6.24134 6.26141 6.34100 6.40121 6.55660 6.59706 6.90697 6.96645 7.18355 7.34526 7.49326 7.68792 8.04395 8.14005 8.31184 9.15591 9.90814 10.88278 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.003671 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.612775 B = 7624.489867 C = 8085.711073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.185 3.815 4 H 0.089 0.911 5 N -0.749 5.749 6 C 0.132 3.868 7 C -0.144 4.144 8 C -0.151 4.151 9 C 0.113 3.887 10 O -0.189 6.189 11 C -0.385 4.385 12 H 0.087 0.913 13 C 0.036 3.964 14 N -0.869 5.869 15 Si 0.936 3.064 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.269 1.269 19 C -0.190 4.190 20 C -0.145 4.145 21 C -0.161 4.161 22 H 0.103 0.897 23 C -0.169 4.169 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.115 4.115 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.389 0.611 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.267 0.733 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.680 -14.035 2.106 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.079 3.921 4 H 0.107 0.893 5 N -0.384 5.384 6 C 0.034 3.966 7 C -0.166 4.166 8 C -0.170 4.170 9 C 0.060 3.940 10 O -0.094 6.094 11 C -0.462 4.462 12 H 0.105 0.895 13 C -0.167 4.167 14 N -0.506 5.506 15 Si 0.762 3.238 16 H -0.201 1.201 17 H -0.204 1.204 18 H -0.194 1.194 19 C -0.209 4.209 20 C -0.167 4.167 21 C -0.181 4.181 22 H 0.121 0.879 23 C -0.206 4.206 24 C -0.118 4.118 25 C -0.174 4.174 26 C -0.172 4.172 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.224 0.776 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.372 -13.765 2.537 20.062 hybrid contribution 0.069 0.242 -1.235 1.261 sum 14.442 -13.524 1.302 19.828 Atomic orbital electron populations 1.21714 0.95284 1.00721 1.02777 1.21934 0.96630 0.96918 1.01488 1.20259 0.90580 0.92437 0.88848 0.89298 1.44364 1.46843 1.39922 1.07276 1.17301 0.93195 0.91709 0.94356 1.20223 0.99276 1.00438 0.96663 1.20021 1.01864 0.97936 0.97223 1.19241 0.90684 0.90750 0.93277 1.83993 1.49703 1.42208 1.33531 1.21213 1.28737 1.12034 0.84251 0.89545 1.25198 0.96500 0.96176 0.98799 1.70046 1.29651 1.24494 1.26403 0.85784 0.79005 0.78565 0.80468 1.20085 1.20422 1.19390 1.20977 0.99938 1.00873 0.99160 1.20237 1.01686 0.98313 0.96471 1.23009 0.94775 0.96910 1.03377 0.87930 1.23200 1.00815 1.03942 0.92663 1.21525 0.98158 0.93289 0.98808 1.21431 0.98359 0.94150 1.03479 1.21362 0.95263 1.01782 0.98770 0.93546 0.92790 0.91981 0.92193 0.91994 0.77614 0.87127 0.86746 0.92336 0.85709 0.87867 0.88292 0.89678 0.93114 0.92502 0.90570 0.92457 0.92930 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.74 37.16 0.36 -1.28 16 2 C -0.13 -1.28 5.57 -26.73 -0.15 -1.43 16 3 C 0.19 2.01 1.81 -67.93 -0.12 1.89 16 4 H 0.09 1.09 5.16 -51.93 -0.27 0.82 16 5 N -0.75 -9.19 2.84 -52.12 -0.15 -9.33 16 6 C 0.13 2.11 4.81 -83.71 -0.40 1.70 16 7 C -0.14 -2.48 9.21 -39.40 -0.36 -2.84 16 8 C -0.15 -3.15 9.98 -39.42 -0.39 -3.55 16 9 C 0.11 2.73 6.65 -39.09 -0.26 2.47 16 10 O -0.19 -5.49 9.76 -0.03 0.00 -5.49 16 11 C -0.39 -10.99 9.44 30.87 0.29 -10.70 16 12 H 0.09 2.29 5.28 -52.48 -0.28 2.01 16 13 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 14 N -0.87 -26.10 13.67 55.48 0.76 -25.34 16 15 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 C -0.19 -4.10 9.13 -39.42 -0.36 -4.46 16 20 C -0.14 -2.58 9.89 -39.40 -0.39 -2.97 16 21 C -0.16 -1.59 5.46 -90.58 -0.49 -2.09 16 22 H 0.10 0.91 8.07 -51.93 -0.42 0.50 16 23 C -0.17 -1.68 9.03 -26.68 -0.24 -1.92 16 24 C -0.12 -1.25 2.70 -154.51 -0.42 -1.67 16 25 C -0.12 -1.50 8.57 37.16 0.32 -1.18 16 26 C -0.11 -1.05 9.85 37.16 0.37 -0.68 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.62 7.77 -51.93 -0.40 0.22 16 29 H 0.06 0.81 7.89 -51.93 -0.41 0.40 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.39 4.42 7.36 -40.82 -0.30 4.12 16 33 H 0.11 1.67 5.58 -52.49 -0.29 1.38 16 34 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 2.75 5.69 -52.49 -0.30 2.45 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.05 6.14 -51.93 -0.32 0.74 16 39 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 40 H 0.05 0.63 7.93 -51.93 -0.41 0.22 16 41 H 0.06 0.76 7.82 -51.93 -0.41 0.36 16 42 H 0.08 1.11 5.35 -51.93 -0.28 0.83 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 45 H 0.06 0.54 7.93 -51.92 -0.41 0.12 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -29.95 355.40 -8.40 -38.35 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.00 Total: 8.25 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -2.35 Total: -27.80 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.61 Total: -34.67 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: 0.00 Total: -5.49 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.95 -8.40 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.767 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds