Wall clock time and date at job start Tue Mar 31 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47293 * 2 1 4 4 H 1.09002 * 109.46913 * 55.24763 * 3 2 1 5 5 N 1.46503 * 109.47434 * 295.24857 * 3 2 1 6 6 C 1.39782 * 119.99906 * 111.46037 * 5 3 2 7 7 C 1.38948 * 120.01027 * 351.37822 * 6 5 3 8 8 C 1.38010 * 119.99398 * 179.76752 * 7 6 5 9 9 C 1.38896 * 120.00855 * 0.51128 * 8 7 6 10 10 O 1.35790 * 119.99674 * 179.76560 * 9 8 7 11 11 C 1.34816 * 117.00307 * 185.34287 * 10 9 8 12 12 H 1.08003 * 119.99647 * 5.20800 * 11 10 9 13 13 C 1.38617 * 120.00114 * 185.21112 * 11 10 9 14 14 N 1.31578 * 120.00191 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99939 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46889 * 90.00227 * 15 13 11 17 17 H 1.48499 * 109.47043 * 210.00005 * 15 13 11 18 18 H 1.48497 * 109.47099 * 330.00075 * 15 13 11 19 19 C 1.38900 * 120.01038 * 359.74538 * 9 8 7 20 20 C 1.38014 * 120.00568 * 0.02562 * 19 9 8 21 21 C 1.52993 * 109.47522 * 175.24358 * 3 2 1 22 22 H 1.09007 * 115.54671 * 331.19874 * 21 3 2 23 23 C 1.53081 * 117.53117 * 116.90443 * 21 3 2 24 24 C 1.52999 * 117.50285 * 185.52367 * 21 3 2 25 25 C 1.52998 * 117.49612 * 359.97438 * 24 21 3 26 26 C 1.52997 * 117.49844 * 144.97897 * 24 21 3 27 27 H 1.08997 * 109.46966 * 185.04736 * 1 2 3 28 28 H 1.08996 * 109.47063 * 305.04447 * 1 2 3 29 29 H 1.08998 * 109.47087 * 65.04627 * 1 2 3 30 30 H 1.08999 * 109.46699 * 240.00626 * 2 1 3 31 31 H 1.08998 * 109.47230 * 120.00508 * 2 1 3 32 32 H 0.96997 * 119.99968 * 291.46943 * 5 3 2 33 33 H 1.07999 * 119.99874 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.99516 * 180.23221 * 8 7 6 35 35 H 0.97002 * 120.00327 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.99970 * 179.97438 * 19 9 8 37 37 H 1.07999 * 120.00361 * 180.02562 * 20 19 9 38 38 H 1.08996 * 117.51438 * 359.97438 * 23 21 3 39 39 H 1.09003 * 117.49111 * 214.95631 * 23 21 3 40 40 H 1.09006 * 109.46927 * 180.08552 * 25 24 21 41 41 H 1.09005 * 109.46804 * 60.09400 * 25 24 21 42 42 H 1.08995 * 109.47798 * 300.08909 * 25 24 21 43 43 H 1.09005 * 109.47009 * 299.90792 * 26 24 21 44 44 H 1.08996 * 109.47535 * 59.91535 * 26 24 21 45 45 H 1.09007 * 109.46740 * 179.91518 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9803 0.8444 5 7 1.6474 2.0993 -1.2493 6 6 0.6980 3.1251 -1.2311 7 6 -0.0040 3.4018 -0.0643 8 6 -0.9379 4.4177 -0.0455 9 6 -1.1838 5.1567 -1.1955 10 8 -2.1061 6.1531 -1.1780 11 6 -2.3768 6.7574 -2.3523 12 1 -1.9319 6.3884 -3.2647 13 6 -3.2261 7.8523 -2.3889 14 7 -3.7677 8.3022 -1.2773 15 14 -3.6006 8.6900 -4.0160 16 1 -4.7930 8.0578 -4.6353 17 1 -3.8707 10.1311 -3.7802 18 1 -2.4358 8.5471 -4.9259 19 6 -0.4861 4.8768 -2.3635 20 6 0.4513 3.8640 -2.3817 21 6 3.5653 1.4442 0.1196 22 1 3.9960 0.5963 0.6524 23 6 4.3660 2.0255 -1.0484 24 6 4.2608 2.7988 0.2677 25 6 3.3779 4.0482 0.2842 26 6 5.5074 2.8599 1.1526 27 1 -0.3633 -1.0237 0.0904 28 1 -0.3633 0.5901 0.8413 29 1 -0.3633 0.4335 -0.9317 30 1 1.8932 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0462 1.8224 -2.0890 33 1 0.1843 2.8245 0.8289 34 1 -1.4808 4.6353 0.8625 35 1 -4.3623 9.0682 -1.3029 36 1 -0.6778 5.4512 -3.2578 37 1 0.9941 3.6467 -3.2898 38 1 3.8061 2.4065 -1.9025 39 1 5.3231 1.5600 -1.2835 40 1 4.0037 4.9340 0.3929 41 1 2.6819 3.9902 1.1211 42 1 2.8190 4.1106 -0.6495 43 1 5.2477 2.5584 2.1674 44 1 6.2675 2.1864 0.7567 45 1 5.8952 3.8786 1.1642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397661398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:26 Heat of formation + Delta-G solvation = 3.704879 kcal Electronic energy + Delta-G solvation = -23337.453705 eV Core-core repulsion = 20127.602974 eV Total energy + Delta-G solvation = -3209.850732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06404 -40.07961 -38.23416 -36.07341 -34.22530 -33.12610 -31.70533 -30.49248 -28.72742 -28.28503 -27.45524 -26.58925 -23.88356 -22.77371 -22.57131 -20.91816 -19.80420 -19.37547 -18.86737 -17.84203 -16.78928 -16.25467 -16.17859 -15.69865 -15.56495 -15.33601 -14.90790 -14.66694 -14.60258 -14.36524 -14.08134 -14.00223 -13.49090 -13.41510 -13.23140 -13.14921 -13.02809 -12.77139 -12.69237 -12.59950 -12.24940 -12.11267 -12.08823 -11.99732 -11.81048 -11.58214 -11.12167 -10.85565 -10.69123 -10.33716 -10.02314 -9.72748 -8.38267 -7.86192 -6.01391 0.62824 0.98605 1.36308 1.46392 1.53535 2.22999 2.63830 2.92973 2.95274 3.29168 3.66840 3.68697 3.92673 4.00783 4.14542 4.18400 4.25967 4.30903 4.36556 4.42979 4.60460 4.63801 4.79771 4.82007 4.83040 4.84937 4.98124 5.00130 5.04331 5.11353 5.13621 5.17060 5.18458 5.19773 5.26528 5.33485 5.35770 5.41029 5.51072 5.55161 5.56566 5.62271 5.82859 6.03905 6.13403 6.71535 7.07085 7.12469 7.96063 8.86350 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.003671 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.612775 B = 7624.489867 C = 8085.711073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.078 0.922 5 N -0.732 5.732 6 C 0.172 3.828 7 C -0.140 4.140 8 C -0.155 4.155 9 C 0.061 3.939 10 O -0.244 6.244 11 C -0.404 4.404 12 H 0.096 0.904 13 C -0.028 4.028 14 N -0.927 5.927 15 Si 1.015 2.985 16 H -0.265 1.265 17 H -0.273 1.273 18 H -0.254 1.254 19 C -0.192 4.192 20 C -0.150 4.150 21 C -0.151 4.151 22 H 0.124 0.876 23 C -0.164 4.164 24 C -0.129 4.129 25 C -0.116 4.116 26 C -0.112 4.112 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.401 0.599 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.269 0.731 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.492 -16.886 1.208 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.076 3.924 4 H 0.096 0.904 5 N -0.367 5.367 6 C 0.071 3.929 7 C -0.162 4.162 8 C -0.175 4.175 9 C 0.011 3.989 10 O -0.152 6.152 11 C -0.481 4.481 12 H 0.114 0.886 13 C -0.224 4.224 14 N -0.567 5.567 15 Si 0.835 3.165 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.178 1.178 19 C -0.212 4.212 20 C -0.172 4.172 21 C -0.170 4.170 22 H 0.142 0.858 23 C -0.201 4.201 24 C -0.129 4.129 25 C -0.173 4.173 26 C -0.169 4.169 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.237 0.763 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.258 -16.702 1.639 24.072 hybrid contribution -0.548 0.819 -0.845 1.298 sum 16.710 -15.883 0.794 23.068 Atomic orbital electron populations 1.21715 0.96453 1.01249 1.01191 1.21873 0.95386 0.95851 1.03029 1.20423 0.91729 0.93007 0.87276 0.90428 1.44444 1.45088 1.38259 1.08877 1.17320 0.91802 0.90762 0.93035 1.20416 0.98155 0.99430 0.98233 1.20206 1.02593 0.98479 0.96220 1.19711 0.92128 0.91536 0.95481 1.83934 1.52583 1.44625 1.34104 1.21716 1.29045 1.12427 0.84872 0.88647 1.26496 0.96083 0.96683 1.03178 1.70203 1.31475 1.25730 1.29310 0.84636 0.79364 0.77224 0.75292 1.18986 1.19744 1.17771 1.21009 1.00534 1.01777 0.97869 1.20470 1.00997 0.97356 0.98373 1.22980 0.93518 0.97025 1.03477 0.85811 1.23241 1.01514 1.03350 0.92006 1.21524 0.98686 0.92568 1.00142 1.21363 0.98430 0.95681 1.01803 1.21345 0.94766 1.02015 0.98769 0.92264 0.93569 0.94167 0.91194 0.89881 0.76281 0.84489 0.87400 0.92201 0.86819 0.84769 0.89055 0.87974 0.93335 0.93568 0.92555 0.91999 0.91523 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.74 71.98 0.70 -2.19 16 2 C -0.12 -1.89 5.57 30.59 0.17 -1.72 16 3 C 0.18 3.28 1.81 44.99 0.08 3.36 16 4 H 0.08 1.65 5.16 -2.39 -0.01 1.64 16 5 N -0.73 -15.69 2.84 -318.80 -0.91 -16.59 16 6 C 0.17 5.18 4.81 38.21 0.18 5.36 16 7 C -0.14 -4.73 9.21 22.39 0.21 -4.53 16 8 C -0.16 -6.76 9.98 22.37 0.22 -6.54 16 9 C 0.06 3.11 6.65 22.59 0.15 3.26 16 10 O -0.24 -15.22 9.76 -23.03 -0.22 -15.44 16 11 C -0.40 -24.34 9.44 67.91 0.64 -23.69 16 12 H 0.10 5.30 5.28 -2.91 -0.02 5.28 16 13 C -0.03 -1.67 5.49 84.82 0.47 -1.20 16 14 N -0.93 -58.83 13.67 21.61 0.30 -58.53 16 15 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 19 C -0.19 -8.55 9.13 22.38 0.20 -8.34 16 20 C -0.15 -5.16 9.89 22.39 0.22 -4.94 16 21 C -0.15 -2.33 5.46 -10.77 -0.06 -2.39 16 22 H 0.12 1.52 8.07 -2.38 -0.02 1.50 16 23 C -0.16 -2.61 9.03 30.62 0.28 -2.33 16 24 C -0.13 -2.35 2.70 -52.18 -0.14 -2.49 16 25 C -0.12 -2.79 8.57 71.98 0.62 -2.17 16 26 C -0.11 -1.69 9.85 71.98 0.71 -0.98 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 0.96 7.77 -2.39 -0.02 0.94 16 29 H 0.04 0.95 7.89 -2.39 -0.02 0.93 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.40 7.49 7.36 -92.71 -0.68 6.81 16 33 H 0.14 3.90 5.58 -2.91 -0.02 3.89 16 34 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.11 5.22 5.69 -2.91 -0.02 5.20 16 37 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 38 H 0.09 1.60 6.14 -2.39 -0.01 1.59 16 39 H 0.10 1.34 8.05 -2.39 -0.02 1.32 16 40 H 0.05 1.16 7.93 -2.38 -0.02 1.14 16 41 H 0.05 1.18 7.82 -2.38 -0.02 1.17 16 42 H 0.06 1.55 5.35 -2.39 -0.01 1.53 16 43 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.07 0.83 7.90 -2.39 -0.02 0.81 16 45 H 0.05 0.87 7.93 -2.38 -0.02 0.86 16 Total: -1.00 -70.73 355.40 6.15 -64.58 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.30 Total: 31.07 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 4.65 Total: -51.53 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -0.61 Total: -75.13 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.22 Total: -15.44 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.73 6.15 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.286 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds