Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47522 * 2 1 4 4 H 1.08995 * 109.47140 * 54.76802 * 3 2 1 5 5 N 1.46506 * 109.46972 * 294.77378 * 3 2 1 6 6 C 1.39775 * 120.00198 * 98.27382 * 5 3 2 7 7 C 1.38949 * 120.00374 * 0.74474 * 6 5 3 8 8 C 1.38019 * 119.99003 * 179.76447 * 7 6 5 9 9 C 1.38887 * 120.00855 * 0.51246 * 8 7 6 10 10 O 1.35799 * 119.99748 * 179.76358 * 9 8 7 11 11 C 1.34810 * 116.99956 * 184.67484 * 10 9 8 12 12 H 1.08000 * 120.00281 * 354.94253 * 11 10 9 13 13 C 1.38631 * 119.99532 * 174.94162 * 11 10 9 14 14 N 1.31581 * 119.99711 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00329 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46882 * 89.99786 * 15 13 11 17 17 H 1.48493 * 109.47465 * 210.00135 * 15 13 11 18 18 H 1.48505 * 109.47295 * 330.00208 * 15 13 11 19 19 C 1.38899 * 120.01228 * 359.74156 * 9 8 7 20 20 C 1.38013 * 120.00786 * 0.02562 * 19 9 8 21 21 C 1.52994 * 109.47337 * 174.77341 * 3 2 1 22 22 H 1.09001 * 115.55099 * 34.32719 * 21 3 2 23 23 C 1.53004 * 117.49940 * 248.62152 * 21 3 2 24 24 C 1.52997 * 117.50099 * 179.97438 * 21 3 2 25 25 C 1.53007 * 117.49908 * 214.98066 * 24 21 3 26 26 C 1.53003 * 117.49839 * 359.97386 * 24 21 3 27 27 H 1.08990 * 109.47311 * 183.25331 * 1 2 3 28 28 H 1.09000 * 109.46997 * 303.25810 * 1 2 3 29 29 H 1.09003 * 109.46746 * 63.25365 * 1 2 3 30 30 H 1.09000 * 109.47378 * 239.99773 * 2 1 3 31 31 H 1.09005 * 109.47205 * 119.99988 * 2 1 3 32 32 H 0.97002 * 119.99762 * 278.55214 * 5 3 2 33 33 H 1.08001 * 120.00472 * 0.02597 * 7 6 5 34 34 H 1.08005 * 119.99242 * 180.27473 * 8 7 6 35 35 H 0.96996 * 119.99901 * 179.97438 * 14 13 11 36 36 H 1.08006 * 120.00155 * 180.02562 * 19 9 8 37 37 H 1.07993 * 120.00910 * 180.02562 * 20 19 9 38 38 H 1.08998 * 117.49663 * 359.97438 * 23 21 3 39 39 H 1.08993 * 117.49932 * 145.02200 * 23 21 3 40 40 H 1.08993 * 109.47248 * 59.99872 * 25 24 21 41 41 H 1.09007 * 109.46664 * 179.97438 * 25 24 21 42 42 H 1.08990 * 109.46712 * 299.99551 * 25 24 21 43 43 H 1.09000 * 109.47212 * 59.99850 * 26 24 21 44 44 H 1.08998 * 109.47392 * 179.97438 * 26 24 21 45 45 H 1.09001 * 109.46999 * 300.00137 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6023 1.9827 0.8394 5 7 1.6572 2.0958 -1.2542 6 6 0.5268 2.9169 -1.2978 7 6 -0.2250 3.1258 -0.1481 8 6 -1.3383 3.9405 -0.1904 9 6 -1.7133 4.5428 -1.3843 10 8 -2.8115 5.3405 -1.4268 11 6 -3.1763 5.8159 -2.6344 12 1 -2.5577 5.6258 -3.4990 13 6 -4.3457 6.5488 -2.7663 14 7 -4.7021 7.0124 -3.9450 15 14 -5.4161 6.8769 -1.2710 16 1 -4.9885 8.1436 -0.6246 17 1 -6.8351 6.9911 -1.6935 18 1 -5.2755 5.7568 -0.3062 19 6 -0.9650 4.3299 -2.5350 20 6 0.1511 3.5192 -2.4923 21 6 3.5643 1.4444 0.1314 22 1 4.0793 0.6164 -0.3558 23 6 4.1603 1.9782 1.4356 24 6 4.2701 2.8018 0.1503 25 6 5.6448 2.8926 -0.5153 26 6 3.3975 4.0534 0.0356 27 1 -0.3633 -1.0259 0.0583 28 1 -0.3633 0.5636 0.8593 29 1 -0.3633 0.4625 -0.9178 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1858 1.9554 -2.0552 33 1 0.0642 2.6542 0.7795 34 1 -1.9201 4.1065 0.7043 35 1 -5.5204 7.5248 -4.0374 36 1 -1.2565 4.7987 -3.4633 37 1 0.7332 3.3540 -3.3868 38 1 3.4665 2.3284 2.1998 39 1 5.0675 1.5014 1.8066 40 1 5.5564 2.6285 -1.5691 41 1 6.0248 3.9104 -0.4268 42 1 6.3322 2.2038 -0.0245 43 1 2.6937 4.0831 0.8675 44 1 4.0297 4.9408 0.0632 45 1 2.8473 4.0278 -0.9050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397661403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = 17.655851 kcal Electronic energy + Delta-G solvation = -23269.897491 eV Core-core repulsion = 20060.651718 eV Total energy + Delta-G solvation = -3209.245772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.81627 -38.76348 -37.01642 -34.98289 -32.41893 -31.88240 -30.16587 -29.66999 -27.88729 -27.47975 -25.83330 -24.54746 -22.53589 -22.03924 -20.87776 -20.17072 -18.85879 -17.59723 -17.36920 -16.33454 -15.89633 -15.13935 -14.58155 -14.47166 -14.17687 -13.77773 -13.73767 -13.61826 -13.50011 -13.03244 -12.79925 -12.68218 -12.40200 -12.22128 -12.11166 -12.01204 -11.94295 -11.67223 -11.51926 -11.32035 -11.23764 -10.89909 -10.85559 -10.77485 -10.45808 -10.12836 -10.04746 -9.64767 -9.25377 -9.06945 -8.48943 -8.21132 -6.42851 -6.28402 -3.92557 2.15184 2.51598 3.30201 3.32540 3.38483 3.48144 4.02066 4.34372 4.36312 4.60064 4.66701 4.77912 4.97605 4.99815 5.10379 5.13661 5.20147 5.25059 5.40786 5.52704 5.54447 5.60895 5.62619 5.67518 5.77662 5.80385 5.81812 5.91733 5.97651 6.02849 6.05376 6.11606 6.16445 6.18700 6.28888 6.42816 6.43438 6.47736 6.82284 6.88168 7.05261 7.38798 7.53035 7.83809 7.97917 8.14910 8.28006 9.08392 9.75312 10.80287 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.003638 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.415457 B = 7695.290239 C = 8067.593701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.188 3.812 4 H 0.081 0.919 5 N -0.745 5.745 6 C 0.143 3.857 7 C -0.151 4.151 8 C -0.149 4.149 9 C 0.115 3.885 10 O -0.229 6.229 11 C -0.383 4.383 12 H 0.103 0.897 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.261 1.261 19 C -0.175 4.175 20 C -0.147 4.147 21 C -0.159 4.159 22 H 0.101 0.899 23 C -0.169 4.169 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.115 4.115 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.390 0.610 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.276 0.724 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.409 -11.883 8.659 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.082 3.918 4 H 0.099 0.901 5 N -0.379 5.379 6 C 0.044 3.956 7 C -0.173 4.173 8 C -0.169 4.169 9 C 0.064 3.936 10 O -0.136 6.136 11 C -0.459 4.459 12 H 0.120 0.880 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.185 1.185 19 C -0.195 4.195 20 C -0.170 4.170 21 C -0.178 4.178 22 H 0.119 0.881 23 C -0.207 4.207 24 C -0.113 4.113 25 C -0.171 4.171 26 C -0.173 4.173 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.224 0.776 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.067 -11.719 8.896 22.533 hybrid contribution -0.264 0.065 0.068 0.280 sum 16.803 -11.654 8.965 22.327 Atomic orbital electron populations 1.21779 0.95212 1.00830 1.02885 1.21994 0.96744 0.97014 1.01440 1.20318 0.90416 0.92493 0.88563 0.90062 1.44268 1.29302 1.53764 1.10531 1.17372 0.89340 0.95029 0.93838 1.20207 0.97139 1.03397 0.96555 1.20005 0.99180 1.01288 0.96410 1.18947 0.88805 0.92390 0.93431 1.83571 1.39533 1.57466 1.33032 1.20701 1.08177 1.32585 0.84421 0.87994 1.24422 0.96336 0.95985 0.97508 1.69663 1.24911 1.35959 1.22315 0.86188 0.78715 0.79546 0.82460 1.20101 1.21084 1.18464 1.21094 0.96600 1.02433 0.99338 1.20275 0.99119 1.01804 0.95771 1.22783 0.95377 0.97617 1.02002 0.88085 1.23274 1.02590 1.03839 0.90968 1.21510 0.96872 0.92784 1.00141 1.21351 0.93855 1.01816 1.00112 1.21420 0.98265 0.94110 1.03461 0.93573 0.92825 0.91672 0.92216 0.92006 0.77607 0.86993 0.86800 0.91356 0.85067 0.87516 0.88849 0.89067 0.92335 0.92196 0.92845 0.92744 0.93105 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.61 37.16 0.32 -1.40 16 2 C -0.13 -1.31 5.59 -26.73 -0.15 -1.46 16 3 C 0.19 1.95 1.68 -67.93 -0.11 1.84 16 4 H 0.08 0.94 5.38 -51.93 -0.28 0.66 16 5 N -0.75 -8.89 3.16 -52.12 -0.16 -9.05 16 6 C 0.14 2.21 4.86 -83.71 -0.41 1.80 16 7 C -0.15 -2.47 7.98 -39.40 -0.31 -2.79 16 8 C -0.15 -2.93 9.98 -39.42 -0.39 -3.32 16 9 C 0.12 2.67 6.65 -39.10 -0.26 2.41 16 10 O -0.23 -6.16 8.58 -0.04 0.00 -6.16 16 11 C -0.38 -10.99 9.94 30.88 0.31 -10.69 16 12 H 0.10 2.99 5.42 -52.49 -0.28 2.70 16 13 C 0.06 1.70 5.49 -17.51 -0.10 1.60 16 14 N -0.89 -26.29 13.96 55.48 0.77 -25.52 16 15 Si 0.90 22.25 28.61 -169.99 -4.86 17.39 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.17 -3.75 9.16 -39.42 -0.36 -4.12 16 20 C -0.15 -2.59 9.89 -39.40 -0.39 -2.98 16 21 C -0.16 -1.44 5.02 -90.62 -0.46 -1.89 16 22 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 23 C -0.17 -1.47 9.47 -26.70 -0.25 -1.72 16 24 C -0.11 -1.07 2.67 -154.48 -0.41 -1.48 16 25 C -0.11 -0.94 9.85 37.16 0.37 -0.58 16 26 C -0.12 -1.31 8.68 37.16 0.32 -0.98 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.63 7.17 -51.93 -0.37 0.25 16 29 H 0.06 0.90 6.88 -51.93 -0.36 0.54 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.39 4.33 8.75 -40.82 -0.36 3.97 16 33 H 0.11 1.60 5.02 -52.49 -0.26 1.33 16 34 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.13 3.00 5.62 -52.48 -0.30 2.70 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.09 0.83 7.96 -51.93 -0.41 0.41 16 39 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 7.92 -51.93 -0.41 0.07 16 42 H 0.05 0.39 7.90 -51.93 -0.41 -0.02 16 43 H 0.05 0.66 7.78 -51.93 -0.40 0.25 16 44 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 45 H 0.08 0.99 5.99 -51.93 -0.31 0.68 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -29.15 354.07 -8.29 -37.44 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.08 Total: 6.34 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.29 Total: -25.77 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.61 Total: -34.57 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: 0.00 Total: -6.16 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.86 Total: 17.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.15 -8.29 -37.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.093 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds