Wall clock time and date at job start Tue Mar 31 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47522 * 2 1 4 4 H 1.08995 * 109.47140 * 54.76802 * 3 2 1 5 5 N 1.46506 * 109.46972 * 294.77378 * 3 2 1 6 6 C 1.39775 * 120.00198 * 98.27382 * 5 3 2 7 7 C 1.38949 * 120.00374 * 0.74474 * 6 5 3 8 8 C 1.38019 * 119.99003 * 179.76447 * 7 6 5 9 9 C 1.38887 * 120.00855 * 0.51246 * 8 7 6 10 10 O 1.35799 * 119.99748 * 179.76358 * 9 8 7 11 11 C 1.34810 * 116.99956 * 184.67484 * 10 9 8 12 12 H 1.08000 * 120.00281 * 354.94253 * 11 10 9 13 13 C 1.38631 * 119.99532 * 174.94162 * 11 10 9 14 14 N 1.31581 * 119.99711 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00329 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46882 * 89.99786 * 15 13 11 17 17 H 1.48493 * 109.47465 * 210.00135 * 15 13 11 18 18 H 1.48505 * 109.47295 * 330.00208 * 15 13 11 19 19 C 1.38899 * 120.01228 * 359.74156 * 9 8 7 20 20 C 1.38013 * 120.00786 * 0.02562 * 19 9 8 21 21 C 1.52994 * 109.47337 * 174.77341 * 3 2 1 22 22 H 1.09001 * 115.55099 * 34.32719 * 21 3 2 23 23 C 1.53004 * 117.49940 * 248.62152 * 21 3 2 24 24 C 1.52997 * 117.50099 * 179.97438 * 21 3 2 25 25 C 1.53007 * 117.49908 * 214.98066 * 24 21 3 26 26 C 1.53003 * 117.49839 * 359.97386 * 24 21 3 27 27 H 1.08990 * 109.47311 * 183.25331 * 1 2 3 28 28 H 1.09000 * 109.46997 * 303.25810 * 1 2 3 29 29 H 1.09003 * 109.46746 * 63.25365 * 1 2 3 30 30 H 1.09000 * 109.47378 * 239.99773 * 2 1 3 31 31 H 1.09005 * 109.47205 * 119.99988 * 2 1 3 32 32 H 0.97002 * 119.99762 * 278.55214 * 5 3 2 33 33 H 1.08001 * 120.00472 * 0.02597 * 7 6 5 34 34 H 1.08005 * 119.99242 * 180.27473 * 8 7 6 35 35 H 0.96996 * 119.99901 * 179.97438 * 14 13 11 36 36 H 1.08006 * 120.00155 * 180.02562 * 19 9 8 37 37 H 1.07993 * 120.00910 * 180.02562 * 20 19 9 38 38 H 1.08998 * 117.49663 * 359.97438 * 23 21 3 39 39 H 1.08993 * 117.49932 * 145.02200 * 23 21 3 40 40 H 1.08993 * 109.47248 * 59.99872 * 25 24 21 41 41 H 1.09007 * 109.46664 * 179.97438 * 25 24 21 42 42 H 1.08990 * 109.46712 * 299.99551 * 25 24 21 43 43 H 1.09000 * 109.47212 * 59.99850 * 26 24 21 44 44 H 1.08998 * 109.47392 * 179.97438 * 26 24 21 45 45 H 1.09001 * 109.46999 * 300.00137 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6023 1.9827 0.8394 5 7 1.6572 2.0958 -1.2542 6 6 0.5268 2.9169 -1.2978 7 6 -0.2250 3.1258 -0.1481 8 6 -1.3383 3.9405 -0.1904 9 6 -1.7133 4.5428 -1.3843 10 8 -2.8115 5.3405 -1.4268 11 6 -3.1763 5.8159 -2.6344 12 1 -2.5577 5.6258 -3.4990 13 6 -4.3457 6.5488 -2.7663 14 7 -4.7021 7.0124 -3.9450 15 14 -5.4161 6.8769 -1.2710 16 1 -4.9885 8.1436 -0.6246 17 1 -6.8351 6.9911 -1.6935 18 1 -5.2755 5.7568 -0.3062 19 6 -0.9650 4.3299 -2.5350 20 6 0.1511 3.5192 -2.4923 21 6 3.5643 1.4444 0.1314 22 1 4.0793 0.6164 -0.3558 23 6 4.1603 1.9782 1.4356 24 6 4.2701 2.8018 0.1503 25 6 5.6448 2.8926 -0.5153 26 6 3.3975 4.0534 0.0356 27 1 -0.3633 -1.0259 0.0583 28 1 -0.3633 0.5636 0.8593 29 1 -0.3633 0.4625 -0.9178 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1858 1.9554 -2.0552 33 1 0.0642 2.6542 0.7795 34 1 -1.9201 4.1065 0.7043 35 1 -5.5204 7.5248 -4.0374 36 1 -1.2565 4.7987 -3.4633 37 1 0.7332 3.3540 -3.3868 38 1 3.4665 2.3284 2.1998 39 1 5.0675 1.5014 1.8066 40 1 5.5564 2.6285 -1.5691 41 1 6.0248 3.9104 -0.4268 42 1 6.3322 2.2038 -0.0245 43 1 2.6937 4.0831 0.8675 44 1 4.0297 4.9408 0.0632 45 1 2.8473 4.0278 -0.9050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397661403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:28 Heat of formation + Delta-G solvation = 2.700055 kcal Electronic energy + Delta-G solvation = -23270.546023 eV Core-core repulsion = 20060.651718 eV Total energy + Delta-G solvation = -3209.894304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03684 -40.11912 -38.44864 -36.15176 -34.36398 -33.21784 -31.69854 -30.48584 -29.20905 -28.31109 -27.32433 -26.07719 -24.00281 -22.89425 -22.22479 -21.33743 -19.79859 -19.35346 -19.08634 -17.74975 -17.02156 -16.36438 -15.91892 -15.65958 -15.54114 -15.37804 -15.00478 -14.97062 -14.47371 -14.34147 -14.08330 -14.02472 -13.77573 -13.58581 -13.31284 -13.10418 -13.03588 -12.87383 -12.68986 -12.60175 -12.42359 -12.15943 -12.06962 -11.93931 -11.73860 -11.49361 -11.16563 -11.02908 -10.84689 -10.45249 -10.01234 -9.75538 -8.42313 -7.88175 -6.09267 0.60190 0.94274 1.33287 1.38609 1.54471 2.33342 2.47450 2.86663 3.09056 3.20324 3.34103 3.59247 3.89001 4.01943 4.12033 4.15718 4.25163 4.28642 4.35265 4.39967 4.54175 4.59879 4.71862 4.80456 4.84243 4.87629 4.95438 4.98983 5.00675 5.10139 5.13411 5.16153 5.20612 5.21572 5.26607 5.32680 5.38290 5.44054 5.51221 5.53459 5.56271 5.66357 5.87132 5.90264 6.18143 6.69767 6.93783 7.09938 7.75661 8.70270 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.003638 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.415457 B = 7695.290239 C = 8067.593701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.186 3.814 4 H 0.075 0.925 5 N -0.730 5.730 6 C 0.180 3.820 7 C -0.146 4.146 8 C -0.142 4.142 9 C 0.063 3.937 10 O -0.257 6.257 11 C -0.389 4.389 12 H 0.077 0.923 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.270 1.270 18 H -0.264 1.264 19 C -0.185 4.185 20 C -0.156 4.156 21 C -0.153 4.153 22 H 0.116 0.884 23 C -0.160 4.160 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.114 4.114 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.400 0.600 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.281 0.719 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.050 0.950 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.860 -14.254 11.003 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.081 3.919 4 H 0.093 0.907 5 N -0.362 5.362 6 C 0.079 3.921 7 C -0.169 4.169 8 C -0.161 4.161 9 C 0.015 3.985 10 O -0.166 6.166 11 C -0.466 4.466 12 H 0.094 0.906 13 C -0.193 4.193 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.192 1.192 17 H -0.195 1.195 18 H -0.188 1.188 19 C -0.205 4.205 20 C -0.178 4.178 21 C -0.172 4.172 22 H 0.134 0.866 23 C -0.197 4.197 24 C -0.122 4.122 25 C -0.169 4.169 26 C -0.171 4.171 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.235 0.765 33 H 0.160 0.840 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.593 -14.143 11.251 26.655 hybrid contribution -0.683 0.566 -0.605 1.073 sum 18.910 -13.577 10.646 25.598 Atomic orbital electron populations 1.21774 0.96515 1.01213 1.01311 1.21938 0.95367 0.96391 1.02773 1.20478 0.91739 0.92697 0.87020 0.90693 1.44380 1.27622 1.52143 1.12006 1.17390 0.89178 0.92942 0.92635 1.20475 0.95936 1.02417 0.98033 1.20257 0.99847 1.00623 0.95417 1.19417 0.89123 0.94552 0.95399 1.83496 1.41706 1.59774 1.31603 1.20668 1.08209 1.32845 0.84838 0.90572 1.25245 0.97637 0.95970 1.00477 1.69753 1.25946 1.37578 1.24205 0.85204 0.77429 0.79298 0.78696 1.19231 1.19507 1.18785 1.21033 0.98058 1.03428 0.97992 1.20421 0.98290 1.01440 0.97668 1.22716 0.94002 0.97747 1.02744 0.86641 1.23343 1.03065 1.02843 0.90455 1.21496 0.97228 0.92001 1.01485 1.21342 0.93311 1.02120 1.00171 1.21365 0.98329 0.95501 1.01946 0.92589 0.93045 0.94295 0.91573 0.89983 0.76497 0.83951 0.85864 0.90910 0.87825 0.85231 0.89019 0.87388 0.92295 0.92432 0.91525 0.93663 0.93057 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.61 71.98 0.62 -2.39 16 2 C -0.13 -1.96 5.59 30.59 0.17 -1.79 16 3 C 0.19 3.15 1.68 44.99 0.08 3.22 16 4 H 0.08 1.42 5.38 -2.39 -0.01 1.41 16 5 N -0.73 -15.21 3.16 -318.80 -1.01 -16.22 16 6 C 0.18 5.26 4.86 38.22 0.19 5.44 16 7 C -0.15 -4.53 7.98 22.39 0.18 -4.35 16 8 C -0.14 -5.54 9.98 22.37 0.22 -5.32 16 9 C 0.06 3.05 6.65 22.58 0.15 3.20 16 10 O -0.26 -14.46 8.58 -23.07 -0.20 -14.66 16 11 C -0.39 -23.73 9.94 67.91 0.68 -23.05 16 12 H 0.08 4.87 5.42 -2.91 -0.02 4.86 16 13 C 0.00 0.20 5.49 84.82 0.47 0.67 16 14 N -0.93 -57.58 13.96 21.61 0.30 -57.28 16 15 Si 0.97 47.20 28.61 68.60 1.96 49.17 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 19 C -0.19 -8.35 9.16 22.37 0.20 -8.15 16 20 C -0.16 -5.43 9.89 22.39 0.22 -5.21 16 21 C -0.15 -2.13 5.02 -10.80 -0.05 -2.18 16 22 H 0.12 1.37 8.11 -2.39 -0.02 1.35 16 23 C -0.16 -2.11 9.47 30.61 0.29 -1.82 16 24 C -0.12 -1.90 2.67 -52.16 -0.14 -2.04 16 25 C -0.11 -1.50 9.85 71.98 0.71 -0.79 16 26 C -0.11 -2.35 8.68 71.98 0.62 -1.72 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.04 7.17 -2.39 -0.02 1.02 16 29 H 0.04 0.97 6.88 -2.39 -0.02 0.96 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.40 7.50 8.75 -92.71 -0.81 6.68 16 33 H 0.14 3.58 5.02 -2.91 -0.01 3.57 16 34 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 36 H 0.10 5.19 5.62 -2.91 -0.02 5.17 16 37 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.09 1.28 7.96 -2.39 -0.02 1.26 16 39 H 0.11 1.12 8.05 -2.39 -0.02 1.10 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.79 7.92 -2.38 -0.02 0.77 16 42 H 0.07 0.72 7.90 -2.39 -0.02 0.70 16 43 H 0.04 0.99 7.78 -2.39 -0.02 0.97 16 44 H 0.05 1.03 7.92 -2.39 -0.02 1.01 16 45 H 0.06 1.40 5.99 -2.39 -0.01 1.38 16 Total: -1.00 -67.03 354.07 5.83 -61.20 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.17 Total: 24.08 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 4.60 Total: -46.28 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -0.71 Total: -73.50 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.20 Total: -14.66 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.96 Total: 49.17 kcal Total: -67.03 5.83 -61.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.895 kcal (2) G-P(sol) polarization free energy of solvation -67.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds