Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 H 1.09007 * 109.47243 * 305.00397 * 3 2 1 5 5 N 1.46505 * 109.47115 * 64.99932 * 3 2 1 6 6 C 1.39775 * 120.00126 * 274.99991 * 5 3 2 7 7 C 1.38954 * 120.00780 * 179.97438 * 6 5 3 8 8 C 1.38002 * 119.99703 * 179.97438 * 7 6 5 9 9 C 1.38905 * 120.00778 * 0.26007 * 8 7 6 10 10 O 1.35795 * 119.99487 * 179.71935 * 9 8 7 11 11 C 1.34806 * 117.00105 * 354.45908 * 10 9 8 12 12 H 1.07995 * 120.00087 * 5.05500 * 11 10 9 13 13 C 1.38623 * 119.99845 * 185.05398 * 11 10 9 14 14 N 1.31577 * 120.00092 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46830 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47171 * 120.00164 * 15 13 11 18 18 H 1.48502 * 109.47183 * 240.00598 * 15 13 11 19 19 C 1.38904 * 120.00733 * 359.48757 * 9 8 7 20 20 C 1.38010 * 120.00499 * 0.51239 * 19 9 8 21 21 C 1.52993 * 109.47156 * 185.00216 * 3 2 1 22 22 H 1.09004 * 115.55229 * 325.66803 * 21 3 2 23 23 C 1.52999 * 117.50029 * 111.37580 * 21 3 2 24 24 C 1.53002 * 117.50072 * 180.02562 * 21 3 2 25 25 C 1.52998 * 117.49663 * 359.97438 * 24 21 3 26 26 C 1.53001 * 117.49862 * 144.99752 * 24 21 3 27 27 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46866 * 299.99816 * 1 2 3 29 29 H 1.09000 * 109.47059 * 60.00077 * 1 2 3 30 30 H 1.08999 * 109.46866 * 240.00184 * 2 1 3 31 31 H 1.09000 * 109.47059 * 119.99922 * 2 1 3 32 32 H 0.97001 * 119.99403 * 94.99653 * 5 3 2 33 33 H 1.07997 * 119.99644 * 0.02562 * 7 6 5 34 34 H 1.08000 * 120.00051 * 179.97438 * 8 7 6 35 35 H 0.96996 * 120.00136 * 179.97438 * 14 13 11 36 36 H 1.07996 * 119.99809 * 180.25252 * 19 9 8 37 37 H 1.08001 * 120.00137 * 179.76992 * 20 19 9 38 38 H 1.09001 * 117.50141 * 214.98097 * 23 21 3 39 39 H 1.09000 * 117.50199 * 0.02562 * 23 21 3 40 40 H 1.09006 * 109.47033 * 60.00566 * 25 24 21 41 41 H 1.08998 * 109.47334 * 179.97438 * 25 24 21 42 42 H 1.08993 * 109.47628 * 300.00315 * 25 24 21 43 43 H 1.08991 * 109.47207 * 60.00202 * 26 24 21 44 44 H 1.09002 * 109.47051 * 180.02562 * 26 24 21 45 45 H 1.09002 * 109.47051 * 300.00020 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.3900 2.6854 1.3713 7 6 0.0220 3.3062 2.5587 8 6 -1.2243 3.8871 2.6762 9 6 -2.1130 3.8465 1.6094 10 8 -3.3414 4.4132 1.7273 11 6 -3.6788 4.8964 2.9397 12 1 -2.9550 4.8970 3.7412 13 6 -4.9547 5.3925 3.1576 14 7 -5.8367 5.3912 2.1812 15 14 -5.4220 6.0628 4.8374 16 1 -4.2601 5.9512 5.7555 17 1 -5.8172 7.4884 4.7091 18 1 -6.5603 5.2807 5.3833 19 6 -1.7435 3.2306 0.4205 20 6 -0.4973 2.6495 0.3025 21 6 3.5648 1.4444 -0.1258 22 1 4.0780 0.6171 0.3645 23 6 4.1655 1.9764 -1.4284 24 6 4.2705 2.8018 -0.1438 25 6 3.3973 4.0534 -0.0353 26 6 5.6425 2.8937 0.5272 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2719 2.1231 1.9978 33 1 0.7117 3.3348 3.3893 34 1 -1.5105 4.3692 3.5992 35 1 -6.7296 5.7380 2.3337 36 1 -2.4331 3.2027 -0.4102 37 1 -0.2114 2.1674 -0.6207 38 1 5.0741 1.4991 -1.7955 39 1 3.4745 2.3255 -2.1957 40 1 2.8430 4.0295 0.9030 41 1 4.0296 4.9409 -0.0606 42 1 2.6973 4.0817 -0.8702 43 1 6.3320 2.2041 0.0403 44 1 6.0228 3.9113 0.4387 45 1 5.5498 2.6312 1.5810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397661407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = 5.332925 kcal Electronic energy + Delta-G solvation = -23214.133537 eV Core-core repulsion = 20004.353403 eV Total energy + Delta-G solvation = -3209.780135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04066 -40.05360 -38.45390 -36.09043 -34.19153 -33.21322 -31.57547 -30.53162 -29.21341 -28.27241 -27.32326 -26.09255 -23.99224 -22.99820 -22.23149 -21.31628 -19.77361 -19.37840 -18.85581 -17.64093 -17.03320 -16.31971 -16.03921 -15.69636 -15.52325 -15.37669 -14.98795 -14.88023 -14.48749 -14.28998 -14.11537 -13.86242 -13.60391 -13.42031 -13.21860 -13.12579 -12.92282 -12.85960 -12.67114 -12.55839 -12.38875 -12.12238 -12.08137 -12.05125 -11.70221 -11.46481 -11.04494 -10.99432 -10.82344 -10.40151 -9.97989 -9.67814 -8.38221 -7.81331 -6.01049 0.64101 0.99198 1.36484 1.45691 1.54622 2.23093 2.47680 2.94038 3.09341 3.29371 3.58726 3.70633 3.87471 4.03043 4.13074 4.17857 4.24359 4.25951 4.35233 4.39443 4.53237 4.62880 4.73076 4.80445 4.84218 4.86639 4.96790 4.99289 5.03346 5.10346 5.11451 5.15185 5.17867 5.21505 5.24309 5.32310 5.37458 5.40866 5.51909 5.54789 5.57163 5.61713 5.83447 6.04502 6.14375 6.71084 7.07458 7.14004 7.96617 8.86770 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.003452 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.244773 B = 8108.920220 C = 8597.090211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.126 4.126 3 C 0.189 3.811 4 H 0.064 0.936 5 N -0.730 5.730 6 C 0.166 3.834 7 C -0.149 4.149 8 C -0.195 4.195 9 C 0.061 3.939 10 O -0.245 6.245 11 C -0.403 4.403 12 H 0.097 0.903 13 C -0.029 4.029 14 N -0.928 5.928 15 Si 1.016 2.984 16 H -0.252 1.252 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.159 4.159 20 C -0.141 4.141 21 C -0.152 4.152 22 H 0.118 0.882 23 C -0.160 4.160 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.112 4.112 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.401 0.599 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.269 0.731 36 H 0.108 0.892 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.271 -9.168 -3.559 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.165 4.165 3 C 0.084 3.916 4 H 0.082 0.918 5 N -0.363 5.363 6 C 0.065 3.935 7 C -0.172 4.172 8 C -0.215 4.215 9 C 0.012 3.988 10 O -0.153 6.153 11 C -0.480 4.480 12 H 0.114 0.886 13 C -0.225 4.225 14 N -0.568 5.568 15 Si 0.836 3.164 16 H -0.176 1.176 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.179 4.179 20 C -0.162 4.162 21 C -0.171 4.171 22 H 0.136 0.864 23 C -0.197 4.197 24 C -0.121 4.121 25 C -0.172 4.172 26 C -0.169 4.169 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.236 0.764 33 H 0.153 0.847 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.162 0.838 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.919 -9.158 -3.937 24.993 hybrid contribution -0.763 0.493 0.850 1.243 sum 22.156 -8.665 -3.088 23.990 Atomic orbital electron populations 1.22135 0.96804 1.01161 1.01617 1.21975 0.95167 0.96692 1.02685 1.20381 0.92003 0.92386 0.86831 0.91787 1.44357 1.12886 1.62977 1.16111 1.17379 0.87108 0.95900 0.93158 1.20446 0.96165 1.02844 0.97731 1.20995 0.95337 1.06058 0.99086 1.19709 0.86712 0.96584 0.95815 1.83927 1.29127 1.68638 1.33610 1.21774 0.98535 1.39990 0.87709 0.88574 1.26510 0.94301 0.97846 1.03877 1.70209 1.05585 1.46640 1.34345 0.84564 0.78914 0.77860 0.75077 1.17579 1.19481 1.19536 1.20201 0.98403 1.03292 0.95983 1.20663 0.92518 1.03707 0.99361 1.22628 0.93371 0.98052 1.03058 0.86446 1.23345 1.03019 1.02862 0.90474 1.21537 0.97374 0.91821 1.01359 1.21369 0.98318 0.95615 1.01910 1.21349 0.93102 1.02268 1.00207 0.92992 0.93449 0.92776 0.90073 0.91590 0.76396 0.84713 0.86791 0.92216 0.87424 0.83831 0.87235 0.89184 0.92171 0.92578 0.93952 0.91569 0.92184 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.22 71.98 0.59 -3.12 16 2 C -0.13 -2.26 5.59 30.60 0.17 -2.09 16 3 C 0.19 3.51 1.75 44.99 0.08 3.59 16 4 H 0.06 1.36 6.11 -2.38 -0.01 1.35 16 5 N -0.73 -16.13 3.22 -318.79 -1.03 -17.16 16 6 C 0.17 5.12 5.44 38.22 0.21 5.33 16 7 C -0.15 -5.23 9.89 22.39 0.22 -5.01 16 8 C -0.19 -8.75 9.16 22.37 0.20 -8.55 16 9 C 0.06 3.15 6.65 22.59 0.15 3.30 16 10 O -0.24 -15.32 9.76 -23.00 -0.22 -15.55 16 11 C -0.40 -24.40 9.48 67.91 0.64 -23.75 16 12 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 13 C -0.03 -1.74 5.49 84.82 0.47 -1.27 16 14 N -0.93 -59.01 13.67 21.61 0.30 -58.72 16 15 Si 1.02 44.59 29.55 68.60 2.03 46.61 16 16 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 C -0.16 -6.99 9.98 22.38 0.22 -6.77 16 20 C -0.14 -4.80 6.71 22.39 0.15 -4.65 16 21 C -0.15 -2.20 4.94 -10.80 -0.05 -2.25 16 22 H 0.12 1.45 8.11 -2.39 -0.02 1.43 16 23 C -0.16 -2.16 9.47 30.61 0.29 -1.87 16 24 C -0.12 -1.83 2.67 -52.16 -0.14 -1.97 16 25 C -0.11 -2.26 8.69 71.98 0.63 -1.63 16 26 C -0.11 -1.38 9.85 71.98 0.71 -0.67 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.36 5.39 -2.39 -0.01 1.35 16 29 H 0.05 1.26 6.35 -2.39 -0.02 1.24 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.40 7.76 8.55 -92.71 -0.79 6.96 16 33 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 34 H 0.11 5.26 5.63 -2.91 -0.02 5.24 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.14 4.15 4.00 -2.91 -0.01 4.13 16 38 H 0.11 1.15 8.05 -2.39 -0.02 1.13 16 39 H 0.09 1.33 7.96 -2.39 -0.02 1.31 16 40 H 0.06 1.34 6.52 -2.38 -0.02 1.32 16 41 H 0.06 1.03 7.92 -2.39 -0.02 1.01 16 42 H 0.04 0.92 7.77 -2.39 -0.02 0.91 16 43 H 0.07 0.67 7.90 -2.39 -0.02 0.65 16 44 H 0.06 0.74 7.92 -2.39 -0.02 0.73 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -71.17 351.90 5.81 -65.36 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.20 Total: 30.84 kcal Atomic # 6 Polarization: -55.94 SS G_CDS: 4.54 Total: -51.39 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -0.73 Total: -75.87 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.22 Total: -15.55 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -71.17 5.81 -65.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.694 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds