Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 H 1.09004 * 109.47128 * 304.99695 * 3 2 1 5 5 N 1.46497 * 109.47664 * 64.99739 * 3 2 1 6 6 C 1.39778 * 120.00321 * 257.20692 * 5 3 2 7 7 C 1.38952 * 120.00569 * 359.71585 * 6 5 3 8 8 C 1.38007 * 119.99320 * 179.77453 * 7 6 5 9 9 C 1.38901 * 120.00365 * 0.50428 * 8 7 6 10 10 O 1.35798 * 119.99273 * 179.77067 * 9 8 7 11 11 C 1.34817 * 117.00294 * 185.83044 * 10 9 8 12 12 H 1.07995 * 119.99402 * 354.83085 * 11 10 9 13 13 C 1.38619 * 120.00150 * 174.83925 * 11 10 9 14 14 N 1.31577 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99757 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47195 * 89.99428 * 15 13 11 17 17 H 1.48505 * 109.46538 * 209.99598 * 15 13 11 18 18 H 1.48495 * 109.46999 * 329.99090 * 15 13 11 19 19 C 1.38895 * 120.01503 * 359.75086 * 9 8 7 20 20 C 1.38007 * 120.00649 * 359.97438 * 19 9 8 21 21 C 1.52997 * 109.47366 * 185.00259 * 3 2 1 22 22 H 1.09006 * 115.55142 * 28.30160 * 21 3 2 23 23 C 1.52999 * 117.50237 * 242.59192 * 21 3 2 24 24 C 1.53003 * 60.00228 * 252.50995 * 23 21 3 25 25 C 1.52994 * 117.49221 * 252.50903 * 24 23 21 26 26 C 1.52993 * 117.52129 * 107.47689 * 24 23 21 27 27 H 1.09000 * 109.46589 * 300.00245 * 1 2 3 28 28 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47136 * 59.99866 * 1 2 3 30 30 H 1.08999 * 109.47136 * 120.00134 * 2 1 3 31 31 H 1.08998 * 109.46989 * 239.99405 * 2 1 3 32 32 H 0.97006 * 119.99478 * 77.19613 * 5 3 2 33 33 H 1.07999 * 120.00257 * 0.02619 * 7 6 5 34 34 H 1.07997 * 119.99848 * 180.28088 * 8 7 6 35 35 H 0.97000 * 120.00742 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.99945 * 180.02562 * 19 9 8 37 37 H 1.07997 * 120.00711 * 180.02562 * 20 19 9 38 38 H 1.09007 * 117.49288 * 359.97438 * 23 21 3 39 39 H 1.08993 * 117.50319 * 145.01408 * 23 21 3 40 40 H 1.09007 * 109.46811 * 128.62335 * 25 24 23 41 41 H 1.09002 * 109.47178 * 248.61596 * 25 24 23 42 42 H 1.09000 * 109.47957 * 8.62236 * 25 24 23 43 43 H 1.09010 * 109.47012 * 351.37573 * 26 24 23 44 44 H 1.09001 * 109.47051 * 111.36908 * 26 24 23 45 45 H 1.08999 * 109.47302 * 231.37326 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6526 2.0975 1.2517 6 6 0.5790 2.9924 1.2690 7 6 -0.1172 3.2653 0.0978 8 6 -1.1801 4.1453 0.1161 9 6 -1.5474 4.7662 1.3030 10 8 -2.5904 5.6357 1.3198 11 6 -2.8193 6.2948 2.4734 12 1 -2.2398 6.0595 3.3538 13 6 -3.7985 7.2744 2.5294 14 7 -4.5043 7.5613 1.4567 15 14 -4.1152 8.1881 4.1277 16 1 -3.2536 9.3961 4.1863 17 1 -5.5422 8.5943 4.1912 18 1 -3.8017 7.3002 5.2759 19 6 -0.8484 4.4978 2.4729 20 6 0.2111 3.6135 2.4563 21 6 3.5649 1.4442 -0.1258 22 1 3.9941 0.5928 -0.6541 23 6 4.3688 2.0344 1.0345 24 6 4.2589 2.7983 -0.2867 25 6 5.5025 2.8534 -1.1762 26 6 3.3750 4.0468 -0.3101 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.1411 1.9101 2.0686 33 1 0.1710 2.7856 -0.8259 34 1 -1.7241 4.3539 -0.7932 35 1 -5.1898 8.2465 1.4959 36 1 -1.1344 4.9804 3.3957 37 1 0.7543 3.4044 3.3660 38 1 3.8113 2.4219 1.8873 39 1 5.3269 1.5713 1.2699 40 1 5.2399 2.5424 -2.1874 41 1 5.8886 3.8725 -1.1983 42 1 6.2650 2.1846 -0.7769 43 1 2.8203 4.1168 0.6257 44 1 3.9996 4.9320 -0.4292 45 1 2.6752 3.9810 -1.1432 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397661410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = 20.433713 kcal Electronic energy + Delta-G solvation = -23287.227281 eV Core-core repulsion = 20078.101965 eV Total energy + Delta-G solvation = -3209.125315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87354 -38.61214 -36.76343 -34.87539 -32.37543 -31.69251 -30.10852 -29.60360 -27.60990 -27.22709 -26.09674 -24.89592 -22.46123 -21.81219 -21.08019 -19.72547 -18.87750 -17.67753 -17.18285 -16.40482 -15.56811 -15.27739 -14.49229 -14.37280 -14.16343 -13.84551 -13.75465 -13.43449 -13.36750 -13.17815 -12.72837 -12.43281 -12.42952 -12.23452 -12.10440 -11.81924 -11.77783 -11.53410 -11.33499 -11.24316 -11.14097 -10.93926 -10.84482 -10.76707 -10.50349 -10.33217 -9.88585 -9.54278 -9.18680 -9.08936 -8.39887 -8.13210 -6.34098 -6.29521 -3.87000 2.23889 2.61550 3.19783 3.20767 3.24882 3.56164 3.93944 4.08095 4.46367 4.69139 4.73860 4.79314 5.03715 5.10249 5.17591 5.23015 5.26770 5.44256 5.52290 5.56404 5.59217 5.69727 5.70560 5.78757 5.84492 5.86080 5.87458 5.99598 6.02471 6.04699 6.08365 6.17294 6.21784 6.25847 6.34815 6.46140 6.49055 6.58940 6.90443 6.96519 7.18526 7.35552 7.49439 7.68874 8.04420 8.14663 8.30622 9.16186 9.91430 10.88921 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.003603 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.573590 B = 7769.917360 C = 8218.263700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.185 3.815 4 H 0.088 0.912 5 N -0.749 5.749 6 C 0.132 3.868 7 C -0.145 4.145 8 C -0.150 4.150 9 C 0.112 3.888 10 O -0.190 6.190 11 C -0.385 4.385 12 H 0.087 0.913 13 C 0.036 3.964 14 N -0.870 5.870 15 Si 0.936 3.064 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.269 1.269 19 C -0.189 4.189 20 C -0.146 4.146 21 C -0.159 4.159 22 H 0.104 0.896 23 C -0.170 4.170 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.116 4.116 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.389 0.611 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.267 0.733 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.510 -12.296 -2.604 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.079 3.921 4 H 0.105 0.895 5 N -0.385 5.385 6 C 0.035 3.965 7 C -0.167 4.167 8 C -0.170 4.170 9 C 0.060 3.940 10 O -0.095 6.095 11 C -0.462 4.462 12 H 0.105 0.895 13 C -0.167 4.167 14 N -0.506 5.506 15 Si 0.762 3.238 16 H -0.201 1.201 17 H -0.204 1.204 18 H -0.194 1.194 19 C -0.209 4.209 20 C -0.168 4.168 21 C -0.178 4.178 22 H 0.122 0.878 23 C -0.208 4.208 24 C -0.118 4.118 25 C -0.172 4.172 26 C -0.173 4.173 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.225 0.775 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.133 -12.104 -3.014 20.393 hybrid contribution 0.104 0.294 1.220 1.259 sum 16.236 -11.810 -1.794 20.158 Atomic orbital electron populations 1.21746 0.95238 1.00837 1.02842 1.21962 0.96721 0.96961 1.01386 1.20234 0.90661 0.92465 0.88759 0.89461 1.44437 1.35344 1.49440 1.09238 1.17324 0.91000 0.94377 0.93832 1.20210 0.98076 1.02269 0.96130 1.20028 0.99528 1.01036 0.96375 1.19228 0.89237 0.92467 0.93061 1.83986 1.40494 1.48599 1.36426 1.21219 1.20156 1.17291 0.87577 0.89526 1.25198 0.95985 0.96710 0.98789 1.70044 1.21609 1.31012 1.27972 0.85783 0.77961 0.79597 0.80482 1.20084 1.20435 1.19392 1.20966 0.98663 1.02482 0.98819 1.20214 0.99968 1.00938 0.95693 1.22937 0.94518 0.96904 1.03409 0.87758 1.23200 1.00919 1.04019 0.92634 1.21534 0.98241 0.93358 0.98703 1.21360 0.95246 1.01815 0.98753 1.21381 0.98326 0.94239 1.03345 0.91677 0.93593 0.92863 0.92221 0.92105 0.77536 0.87103 0.86737 0.92346 0.85712 0.87875 0.88340 0.89493 0.92410 0.92231 0.92873 0.90836 0.93020 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.03 37.16 0.34 -1.41 16 2 C -0.13 -1.33 5.56 -26.73 -0.15 -1.48 16 3 C 0.19 2.02 1.78 -67.94 -0.12 1.90 16 4 H 0.09 1.06 5.16 -51.93 -0.27 0.80 16 5 N -0.75 -9.24 2.98 -52.12 -0.16 -9.40 16 6 C 0.13 2.13 4.73 -83.70 -0.40 1.73 16 7 C -0.14 -2.50 8.53 -39.40 -0.34 -2.84 16 8 C -0.15 -3.15 9.98 -39.42 -0.39 -3.54 16 9 C 0.11 2.73 6.65 -39.09 -0.26 2.47 16 10 O -0.19 -5.52 9.76 -0.06 0.00 -5.52 16 11 C -0.39 -11.01 9.48 30.87 0.29 -10.72 16 12 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 13 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 14 N -0.87 -26.15 13.67 55.48 0.76 -25.39 16 15 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 C -0.19 -4.11 9.16 -39.42 -0.36 -4.47 16 20 C -0.15 -2.61 9.89 -39.40 -0.39 -3.00 16 21 C -0.16 -1.53 5.46 -90.62 -0.49 -2.02 16 22 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 23 C -0.17 -1.63 9.00 -26.73 -0.24 -1.87 16 24 C -0.12 -1.20 2.70 -154.51 -0.42 -1.62 16 25 C -0.11 -0.99 9.85 37.15 0.37 -0.63 16 26 C -0.12 -1.40 8.75 37.15 0.33 -1.08 16 27 H 0.06 0.91 6.98 -51.93 -0.36 0.54 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.64 7.90 -51.93 -0.41 0.23 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.39 4.44 6.84 -40.82 -0.28 4.17 16 33 H 0.11 1.68 5.63 -52.49 -0.30 1.38 16 34 H 0.11 2.36 8.06 -52.49 -0.42 1.93 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.13 2.75 5.63 -52.49 -0.30 2.46 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.00 5.96 -51.92 -0.31 0.69 16 39 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.51 7.92 -51.93 -0.41 0.09 16 42 H 0.05 0.41 7.90 -51.93 -0.41 0.00 16 43 H 0.07 1.02 5.88 -51.92 -0.31 0.71 16 44 H 0.05 0.60 7.92 -51.93 -0.41 0.18 16 45 H 0.06 0.73 7.80 -51.93 -0.41 0.32 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -30.07 353.16 -8.38 -38.45 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.95 Total: 8.17 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -2.34 Total: -27.67 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.60 Total: -34.79 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: 0.00 Total: -5.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.07 -8.38 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.883 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds