Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 H 1.09004 * 109.47128 * 304.99695 * 3 2 1 5 5 N 1.46497 * 109.47664 * 64.99739 * 3 2 1 6 6 C 1.39778 * 120.00321 * 257.20692 * 5 3 2 7 7 C 1.38952 * 120.00569 * 359.71585 * 6 5 3 8 8 C 1.38007 * 119.99320 * 179.77453 * 7 6 5 9 9 C 1.38901 * 120.00365 * 0.50428 * 8 7 6 10 10 O 1.35798 * 119.99273 * 179.77067 * 9 8 7 11 11 C 1.34817 * 117.00294 * 185.83044 * 10 9 8 12 12 H 1.07995 * 119.99402 * 354.83085 * 11 10 9 13 13 C 1.38619 * 120.00150 * 174.83925 * 11 10 9 14 14 N 1.31577 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99757 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47195 * 89.99428 * 15 13 11 17 17 H 1.48505 * 109.46538 * 209.99598 * 15 13 11 18 18 H 1.48495 * 109.46999 * 329.99090 * 15 13 11 19 19 C 1.38895 * 120.01503 * 359.75086 * 9 8 7 20 20 C 1.38007 * 120.00649 * 359.97438 * 19 9 8 21 21 C 1.52997 * 109.47366 * 185.00259 * 3 2 1 22 22 H 1.09006 * 115.55142 * 28.30160 * 21 3 2 23 23 C 1.52999 * 117.50237 * 242.59192 * 21 3 2 24 24 C 1.53003 * 60.00228 * 252.50995 * 23 21 3 25 25 C 1.52994 * 117.49221 * 252.50903 * 24 23 21 26 26 C 1.52993 * 117.52129 * 107.47689 * 24 23 21 27 27 H 1.09000 * 109.46589 * 300.00245 * 1 2 3 28 28 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47136 * 59.99866 * 1 2 3 30 30 H 1.08999 * 109.47136 * 120.00134 * 2 1 3 31 31 H 1.08998 * 109.46989 * 239.99405 * 2 1 3 32 32 H 0.97006 * 119.99478 * 77.19613 * 5 3 2 33 33 H 1.07999 * 120.00257 * 0.02619 * 7 6 5 34 34 H 1.07997 * 119.99848 * 180.28088 * 8 7 6 35 35 H 0.97000 * 120.00742 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.99945 * 180.02562 * 19 9 8 37 37 H 1.07997 * 120.00711 * 180.02562 * 20 19 9 38 38 H 1.09007 * 117.49288 * 359.97438 * 23 21 3 39 39 H 1.08993 * 117.50319 * 145.01408 * 23 21 3 40 40 H 1.09007 * 109.46811 * 128.62335 * 25 24 23 41 41 H 1.09002 * 109.47178 * 248.61596 * 25 24 23 42 42 H 1.09000 * 109.47957 * 8.62236 * 25 24 23 43 43 H 1.09010 * 109.47012 * 351.37573 * 26 24 23 44 44 H 1.09001 * 109.47051 * 111.36908 * 26 24 23 45 45 H 1.08999 * 109.47302 * 231.37326 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6526 2.0975 1.2517 6 6 0.5790 2.9924 1.2690 7 6 -0.1172 3.2653 0.0978 8 6 -1.1801 4.1453 0.1161 9 6 -1.5474 4.7662 1.3030 10 8 -2.5904 5.6357 1.3198 11 6 -2.8193 6.2948 2.4734 12 1 -2.2398 6.0595 3.3538 13 6 -3.7985 7.2744 2.5294 14 7 -4.5043 7.5613 1.4567 15 14 -4.1152 8.1881 4.1277 16 1 -3.2536 9.3961 4.1863 17 1 -5.5422 8.5943 4.1912 18 1 -3.8017 7.3002 5.2759 19 6 -0.8484 4.4978 2.4729 20 6 0.2111 3.6135 2.4563 21 6 3.5649 1.4442 -0.1258 22 1 3.9941 0.5928 -0.6541 23 6 4.3688 2.0344 1.0345 24 6 4.2589 2.7983 -0.2867 25 6 5.5025 2.8534 -1.1762 26 6 3.3750 4.0468 -0.3101 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.1411 1.9101 2.0686 33 1 0.1710 2.7856 -0.8259 34 1 -1.7241 4.3539 -0.7932 35 1 -5.1898 8.2465 1.4959 36 1 -1.1344 4.9804 3.3957 37 1 0.7543 3.4044 3.3660 38 1 3.8113 2.4219 1.8873 39 1 5.3269 1.5713 1.2699 40 1 5.2399 2.5424 -2.1874 41 1 5.8886 3.8725 -1.1983 42 1 6.2650 2.1846 -0.7769 43 1 2.8203 4.1168 0.6257 44 1 3.9996 4.9320 -0.4292 45 1 2.6752 3.9810 -1.1432 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397661410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = 4.533166 kcal Electronic energy + Delta-G solvation = -23287.916780 eV Core-core repulsion = 20078.101965 eV Total energy + Delta-G solvation = -3209.814815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06144 -40.10125 -38.27351 -36.06021 -34.21327 -33.11482 -31.69763 -30.51771 -28.78859 -28.25813 -27.46035 -26.59637 -23.89683 -22.77512 -22.58729 -20.89892 -19.81595 -19.37754 -18.87009 -17.86721 -16.82721 -16.20293 -16.17838 -15.70524 -15.62154 -15.31285 -14.88994 -14.69377 -14.60731 -14.37120 -14.08488 -14.00705 -13.48385 -13.36568 -13.27834 -13.14461 -13.02415 -12.78453 -12.66481 -12.58379 -12.26849 -12.13805 -12.10480 -12.02813 -11.80531 -11.57670 -11.07691 -10.91414 -10.70430 -10.35475 -10.02948 -9.73090 -8.38123 -7.85257 -6.01255 0.62721 0.98880 1.36295 1.46476 1.53503 2.23116 2.62887 2.92616 2.94148 3.28711 3.65360 3.69429 3.91397 3.98638 4.13823 4.18061 4.25344 4.29687 4.35991 4.42544 4.59433 4.62653 4.79600 4.81457 4.82698 4.84440 4.97925 4.99445 5.02918 5.11495 5.13596 5.16683 5.17735 5.18983 5.26020 5.33445 5.35148 5.40090 5.51450 5.54587 5.56220 5.61724 5.82604 6.03502 6.13707 6.70854 7.07099 7.11302 7.96268 8.86592 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.003603 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.573590 B = 7769.917360 C = 8218.263700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.181 3.819 4 H 0.077 0.923 5 N -0.732 5.732 6 C 0.171 3.829 7 C -0.141 4.141 8 C -0.155 4.155 9 C 0.060 3.940 10 O -0.245 6.245 11 C -0.404 4.404 12 H 0.097 0.903 13 C -0.029 4.029 14 N -0.927 5.927 15 Si 1.015 2.985 16 H -0.265 1.265 17 H -0.273 1.273 18 H -0.254 1.254 19 C -0.192 4.192 20 C -0.151 4.151 21 C -0.150 4.150 22 H 0.125 0.875 23 C -0.166 4.166 24 C -0.128 4.128 25 C -0.112 4.112 26 C -0.115 4.115 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.400 0.600 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.723 -14.675 -1.825 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.076 3.924 4 H 0.095 0.905 5 N -0.367 5.367 6 C 0.070 3.930 7 C -0.163 4.163 8 C -0.175 4.175 9 C 0.011 3.989 10 O -0.153 6.153 11 C -0.481 4.481 12 H 0.114 0.886 13 C -0.225 4.225 14 N -0.568 5.568 15 Si 0.835 3.165 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.178 1.178 19 C -0.212 4.212 20 C -0.173 4.173 21 C -0.169 4.169 22 H 0.143 0.857 23 C -0.203 4.203 24 C -0.128 4.128 25 C -0.169 4.169 26 C -0.172 4.172 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.238 0.762 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.429 -14.558 -2.237 24.381 hybrid contribution -0.606 0.758 0.859 1.296 sum 18.823 -13.800 -1.378 23.381 Atomic orbital electron populations 1.21742 0.96613 1.01180 1.01226 1.21903 0.95274 0.96147 1.02909 1.20392 0.92009 0.92828 0.87189 0.90511 1.44524 1.33593 1.47803 1.10772 1.17351 0.90339 0.92641 0.92654 1.20399 0.96799 1.01288 0.97785 1.20212 1.00473 1.01430 0.95337 1.19699 0.90203 0.93804 0.95198 1.83930 1.43376 1.50936 1.37069 1.21729 1.20546 1.17672 0.88134 0.88593 1.26501 0.95469 0.97488 1.03017 1.70202 1.23090 1.32576 1.30884 0.84634 0.78046 0.78207 0.75615 1.18997 1.19748 1.17757 1.21005 0.99476 1.03153 0.97549 1.20452 0.99116 1.00136 0.97638 1.22898 0.93094 0.97211 1.03689 0.85705 1.23247 1.01581 1.03434 0.92008 1.21541 0.98721 0.92600 0.99907 1.21346 0.94731 1.02112 0.98714 1.21326 0.98420 0.95745 1.01712 0.94237 0.92452 0.93445 0.91359 0.89893 0.76235 0.84466 0.87401 0.92207 0.86760 0.84751 0.89046 0.87786 0.91983 0.92483 0.91542 0.92819 0.92968 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.03 71.98 0.65 -2.48 16 2 C -0.12 -2.00 5.56 30.59 0.17 -1.83 16 3 C 0.18 3.31 1.78 44.99 0.08 3.39 16 4 H 0.08 1.63 5.16 -2.39 -0.01 1.62 16 5 N -0.73 -15.84 2.98 -318.81 -0.95 -16.79 16 6 C 0.17 5.20 4.73 38.22 0.18 5.38 16 7 C -0.14 -4.76 8.53 22.39 0.19 -4.57 16 8 C -0.15 -6.77 9.98 22.37 0.22 -6.54 16 9 C 0.06 3.09 6.65 22.59 0.15 3.24 16 10 O -0.24 -15.28 9.76 -23.14 -0.23 -15.51 16 11 C -0.40 -24.38 9.48 67.91 0.64 -23.74 16 12 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 13 C -0.03 -1.70 5.49 84.82 0.47 -1.23 16 14 N -0.93 -58.92 13.67 21.61 0.30 -58.62 16 15 Si 1.02 44.47 29.55 68.60 2.03 46.50 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 19 C -0.19 -8.56 9.16 22.37 0.20 -8.36 16 20 C -0.15 -5.23 9.89 22.39 0.22 -5.01 16 21 C -0.15 -2.25 5.46 -10.79 -0.06 -2.31 16 22 H 0.13 1.49 8.07 -2.38 -0.02 1.47 16 23 C -0.17 -2.50 9.00 30.59 0.28 -2.22 16 24 C -0.13 -2.19 2.70 -52.18 -0.14 -2.33 16 25 C -0.11 -1.57 9.85 71.98 0.71 -0.86 16 26 C -0.11 -2.59 8.75 71.98 0.63 -1.96 16 27 H 0.04 1.01 6.98 -2.39 -0.02 1.00 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.03 7.90 -2.39 -0.02 1.01 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.40 7.59 6.84 -92.70 -0.63 6.95 16 33 H 0.14 3.93 5.63 -2.91 -0.02 3.91 16 34 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.11 5.24 5.63 -2.91 -0.02 5.22 16 37 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 38 H 0.09 1.52 5.96 -2.38 -0.01 1.50 16 39 H 0.10 1.28 8.05 -2.39 -0.02 1.26 16 40 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.06 0.83 7.92 -2.39 -0.02 0.81 16 42 H 0.07 0.76 7.90 -2.39 -0.02 0.75 16 43 H 0.05 1.39 5.88 -2.38 -0.01 1.38 16 44 H 0.05 1.14 7.92 -2.39 -0.02 1.12 16 45 H 0.05 1.14 7.80 -2.39 -0.02 1.12 16 Total: -1.00 -70.94 353.16 6.09 -64.84 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.35 Total: 31.00 kcal Atomic # 6 Polarization: -56.02 SS G_CDS: 4.60 Total: -51.43 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -0.66 Total: -75.41 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.23 Total: -15.51 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -70.94 6.09 -64.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397661410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.375 kcal (2) G-P(sol) polarization free energy of solvation -70.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds