Wall clock time and date at job start Tue Mar 31 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46886 * 2 1 4 4 H 1.09002 * 109.47442 * 55.00274 * 3 2 1 5 5 N 1.46504 * 109.47476 * 295.00148 * 3 2 1 6 6 C 1.39665 * 120.00298 * 114.22769 * 5 3 2 7 7 C 1.39006 * 120.03551 * 359.97438 * 6 5 3 8 8 C 1.38155 * 120.06175 * 180.02562 * 7 6 5 9 9 C 1.38179 * 120.13962 * 0.02562 * 8 7 6 10 10 C 1.38918 * 120.07970 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.03063 * 180.02562 * 10 9 8 12 12 C 1.34823 * 117.00116 * 185.58703 * 11 10 9 13 13 H 1.08000 * 120.00367 * 4.74918 * 12 11 10 14 14 C 1.38657 * 120.00142 * 184.74996 * 12 11 10 15 15 N 1.31551 * 119.99746 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99997 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47084 * 89.99938 * 16 14 12 18 18 H 1.48491 * 109.47187 * 209.99810 * 16 14 12 19 19 H 1.48501 * 109.47073 * 330.00491 * 16 14 12 20 20 C 1.38747 * 120.04470 * 180.02562 * 6 5 3 21 21 C 1.53004 * 109.46966 * 175.00213 * 3 2 1 22 22 H 1.09004 * 115.55059 * 34.70594 * 21 3 2 23 23 C 1.53000 * 117.49853 * 180.37397 * 21 3 2 24 24 C 1.53000 * 117.49889 * 248.99800 * 21 3 2 25 25 C 1.53002 * 117.49672 * 359.97438 * 24 21 3 26 26 C 1.52996 * 117.49782 * 145.01937 * 24 21 3 27 27 H 1.08993 * 109.46515 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46387 * 299.99600 * 1 2 3 29 29 H 1.08991 * 109.46914 * 59.99664 * 1 2 3 30 30 H 1.09004 * 109.46867 * 239.99882 * 2 1 3 31 31 H 1.09002 * 109.47196 * 119.99920 * 2 1 3 32 32 H 0.97000 * 119.99656 * 294.23294 * 5 3 2 33 33 H 1.08001 * 119.97675 * 0.04681 * 7 6 5 34 34 H 1.07995 * 119.92989 * 179.97438 * 8 7 6 35 35 H 1.07998 * 119.96000 * 180.02562 * 9 8 7 36 36 H 0.97000 * 119.99930 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.06821 * 359.69991 * 20 6 5 38 38 H 1.08998 * 117.49868 * 214.97641 * 23 21 3 39 39 H 1.08999 * 117.49969 * 359.97438 * 23 21 3 40 40 H 1.09001 * 109.47003 * 60.00612 * 25 24 21 41 41 H 1.09004 * 109.46615 * 180.02562 * 25 24 21 42 42 H 1.08991 * 109.47302 * 299.99793 * 25 24 21 43 43 H 1.09005 * 109.47293 * 60.00149 * 26 24 21 44 44 H 1.09005 * 109.47385 * 179.97438 * 26 24 21 45 45 H 1.08996 * 109.47558 * 300.00356 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 0.7471 3.1609 -1.2324 7 6 0.2129 3.5979 -0.0258 8 6 -0.6831 4.6493 -0.0060 9 6 -1.0514 5.2693 -1.1848 10 6 -0.5211 4.8373 -2.3939 11 8 -0.8833 5.4473 -3.5512 12 6 -0.4237 4.9070 -4.6978 13 1 0.1384 3.9852 -4.6731 14 6 -0.6727 5.5349 -5.9087 15 7 -1.3570 6.6581 -5.9387 16 14 -0.0366 4.7859 -7.4974 17 1 -1.0568 3.8597 -8.0513 18 1 0.2364 5.8659 -8.4793 19 1 1.2161 4.0365 -7.2245 20 6 0.3790 3.7815 -2.4175 21 6 3.5649 1.4443 0.1257 22 1 4.0785 0.6205 -0.3700 23 6 4.2698 2.8020 0.1531 24 6 4.1655 1.9682 1.4317 25 6 3.1952 2.4506 2.5119 26 6 5.4411 1.2954 1.9425 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0245 1.7927 -2.0941 33 1 0.4987 3.1154 0.8972 34 1 -1.0971 4.9869 0.9325 35 1 -1.7517 6.0912 -1.1659 36 1 -1.5315 7.0971 -6.7859 37 1 0.7957 3.4465 -3.3559 38 1 5.2473 2.8713 -0.3241 39 1 3.6473 3.6938 0.0812 40 1 2.5403 1.6300 2.8049 41 1 3.7589 2.7936 3.3796 42 1 2.5954 3.2723 2.1208 43 1 6.2310 1.4024 1.1990 44 1 5.7531 1.7678 2.8740 45 1 5.2485 0.2371 2.1181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397734229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:35 Heat of formation + Delta-G solvation = 10.142475 kcal Electronic energy + Delta-G solvation = -23233.159560 eV Core-core repulsion = 20023.587983 eV Total energy + Delta-G solvation = -3209.571577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.67713 -38.64679 -36.82469 -35.07593 -32.45065 -32.02241 -29.74978 -28.93177 -27.97923 -27.76117 -25.88232 -25.18737 -22.01928 -21.66850 -21.28276 -19.90791 -18.87742 -17.78853 -17.26936 -15.78815 -15.40938 -15.28020 -14.76831 -14.54667 -14.26147 -13.85343 -13.75046 -13.70404 -13.43300 -13.19054 -12.80002 -12.71916 -12.38635 -12.28495 -12.10299 -11.99881 -11.67528 -11.59576 -11.35842 -11.20792 -11.02383 -10.91952 -10.78207 -10.69060 -10.42560 -10.23244 -9.93724 -9.71840 -9.35640 -9.26996 -8.71782 -7.30766 -6.67875 -6.37810 -3.96604 2.43985 2.62414 3.16488 3.16861 3.21274 3.44606 4.01835 4.07443 4.43585 4.70791 4.72360 4.81179 4.96029 5.06834 5.16307 5.22516 5.26172 5.38106 5.44165 5.45985 5.55264 5.69695 5.73311 5.77171 5.80024 5.83739 5.88073 5.92133 5.96477 6.01505 6.04292 6.12876 6.24256 6.27732 6.34447 6.41174 6.45444 6.72079 6.72654 7.10563 7.20030 7.44737 7.54217 7.74486 8.08885 8.11123 8.30554 9.08622 9.82120 10.80758 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.003946 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.872552 B = 7093.571990 C = 7448.012152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.174 3.826 4 H 0.098 0.902 5 N -0.742 5.742 6 C 0.257 3.743 7 C -0.283 4.283 8 C -0.039 4.039 9 C -0.240 4.240 10 C 0.191 3.809 11 O -0.179 6.179 12 C -0.387 4.387 13 H 0.090 0.910 14 C 0.038 3.962 15 N -0.865 5.865 16 Si 0.939 3.061 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.304 4.304 21 C -0.159 4.159 22 H 0.099 0.901 23 C -0.158 4.158 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.113 4.113 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.393 0.607 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.268 0.732 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.772 -11.903 13.876 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.068 3.932 4 H 0.116 0.884 5 N -0.371 5.371 6 C 0.155 3.845 7 C -0.306 4.306 8 C -0.058 4.058 9 C -0.260 4.260 10 C 0.136 3.864 11 O -0.083 6.083 12 C -0.464 4.464 13 H 0.108 0.892 14 C -0.166 4.166 15 N -0.501 5.501 16 Si 0.764 3.236 17 H -0.200 1.200 18 H -0.203 1.203 19 H -0.193 1.193 20 C -0.328 4.328 21 C -0.179 4.179 22 H 0.118 0.882 23 C -0.195 4.195 24 C -0.125 4.125 25 C -0.176 4.176 26 C -0.170 4.170 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.226 0.774 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.559 -11.582 13.824 20.411 hybrid contribution 0.606 -0.573 -1.278 1.526 sum 10.165 -12.155 12.546 20.210 Atomic orbital electron populations 1.21707 0.95277 1.00894 1.02720 1.21908 0.96659 0.96698 1.01635 1.20558 0.90635 0.92930 0.89034 0.88438 1.44525 1.49110 1.35921 1.07532 1.17445 0.87604 0.86068 0.93354 1.20087 1.09464 1.05750 0.95302 1.20359 0.95112 0.94086 0.96262 1.20009 1.08982 1.06603 0.90447 1.19077 0.90137 0.89768 0.87400 1.83992 1.63925 1.49154 1.11181 1.21284 1.35798 1.07587 0.81710 0.89247 1.25256 0.96856 0.95833 0.98622 1.70039 1.36944 1.16203 1.26878 0.85750 0.79061 0.78446 0.80366 1.19974 1.20333 1.19350 1.20499 1.09965 1.05314 0.97009 1.22884 0.95731 0.98207 1.01037 0.88240 1.23151 1.01575 0.95140 0.99645 1.21562 0.98069 1.03377 0.89514 1.21407 0.98140 1.00958 0.97138 1.21341 0.94903 0.99931 1.00867 0.93390 0.92932 0.91832 0.92181 0.91711 0.77375 0.87866 0.87401 0.87084 0.92162 0.85935 0.89275 0.88342 0.92238 0.92237 0.91844 0.92653 0.92225 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.80 37.16 0.36 -1.39 16 2 C -0.13 -1.39 5.59 -26.73 -0.15 -1.54 16 3 C 0.17 2.07 2.30 -67.93 -0.16 1.91 16 4 H 0.10 1.22 3.14 -51.93 -0.16 1.06 16 5 N -0.74 -10.81 4.43 -52.18 -0.23 -11.04 16 6 C 0.26 4.70 6.61 -83.82 -0.55 4.14 16 7 C -0.28 -4.95 9.30 -39.33 -0.37 -5.32 16 8 C -0.04 -0.72 10.03 -39.63 -0.40 -1.12 16 9 C -0.24 -5.26 9.99 -39.35 -0.39 -5.65 16 10 C 0.19 4.74 6.64 -39.14 -0.26 4.48 16 11 O -0.18 -5.25 9.76 0.08 0.00 -5.24 16 12 C -0.39 -11.04 9.45 30.89 0.29 -10.75 16 13 H 0.09 2.37 5.28 -52.49 -0.28 2.10 16 14 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 15 N -0.87 -25.83 13.67 55.48 0.76 -25.07 16 16 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.30 -6.72 8.98 -39.20 -0.35 -7.07 16 21 C -0.16 -1.71 5.08 -90.62 -0.46 -2.17 16 22 H 0.10 1.01 8.12 -51.93 -0.42 0.59 16 23 C -0.16 -1.82 9.42 -26.73 -0.25 -2.07 16 24 C -0.12 -1.22 2.70 -154.51 -0.42 -1.64 16 25 C -0.12 -1.13 8.35 37.16 0.31 -0.82 16 26 C -0.11 -0.92 9.85 37.16 0.37 -0.56 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.90 7.71 -51.93 -0.40 0.50 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.39 5.56 8.84 -40.82 -0.36 5.20 16 33 H 0.10 1.57 5.73 -52.49 -0.30 1.27 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 2.76 5.70 -52.49 -0.30 2.46 16 38 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 39 H 0.10 1.34 8.05 -51.93 -0.42 0.93 16 40 H 0.06 0.53 8.00 -51.93 -0.42 0.11 16 41 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 42 H 0.06 0.68 7.41 -51.93 -0.38 0.30 16 43 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 44 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -30.37 363.22 -8.73 -39.10 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.19 Total: 9.50 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -2.52 Total: -28.60 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.53 Total: -36.12 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.37 -8.73 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397734229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.242 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds