Wall clock time and date at job start Tue Mar 31 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46886 * 2 1 4 4 H 1.09002 * 109.47442 * 55.00274 * 3 2 1 5 5 N 1.46504 * 109.47476 * 295.00148 * 3 2 1 6 6 C 1.39665 * 120.00298 * 114.22769 * 5 3 2 7 7 C 1.39006 * 120.03551 * 359.97438 * 6 5 3 8 8 C 1.38155 * 120.06175 * 180.02562 * 7 6 5 9 9 C 1.38179 * 120.13962 * 0.02562 * 8 7 6 10 10 C 1.38918 * 120.07970 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.03063 * 180.02562 * 10 9 8 12 12 C 1.34823 * 117.00116 * 185.58703 * 11 10 9 13 13 H 1.08000 * 120.00367 * 4.74918 * 12 11 10 14 14 C 1.38657 * 120.00142 * 184.74996 * 12 11 10 15 15 N 1.31551 * 119.99746 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99997 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47084 * 89.99938 * 16 14 12 18 18 H 1.48491 * 109.47187 * 209.99810 * 16 14 12 19 19 H 1.48501 * 109.47073 * 330.00491 * 16 14 12 20 20 C 1.38747 * 120.04470 * 180.02562 * 6 5 3 21 21 C 1.53004 * 109.46966 * 175.00213 * 3 2 1 22 22 H 1.09004 * 115.55059 * 34.70594 * 21 3 2 23 23 C 1.53000 * 117.49853 * 180.37397 * 21 3 2 24 24 C 1.53000 * 117.49889 * 248.99800 * 21 3 2 25 25 C 1.53002 * 117.49672 * 359.97438 * 24 21 3 26 26 C 1.52996 * 117.49782 * 145.01937 * 24 21 3 27 27 H 1.08993 * 109.46515 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46387 * 299.99600 * 1 2 3 29 29 H 1.08991 * 109.46914 * 59.99664 * 1 2 3 30 30 H 1.09004 * 109.46867 * 239.99882 * 2 1 3 31 31 H 1.09002 * 109.47196 * 119.99920 * 2 1 3 32 32 H 0.97000 * 119.99656 * 294.23294 * 5 3 2 33 33 H 1.08001 * 119.97675 * 0.04681 * 7 6 5 34 34 H 1.07995 * 119.92989 * 179.97438 * 8 7 6 35 35 H 1.07998 * 119.96000 * 180.02562 * 9 8 7 36 36 H 0.97000 * 119.99930 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.06821 * 359.69991 * 20 6 5 38 38 H 1.08998 * 117.49868 * 214.97641 * 23 21 3 39 39 H 1.08999 * 117.49969 * 359.97438 * 23 21 3 40 40 H 1.09001 * 109.47003 * 60.00612 * 25 24 21 41 41 H 1.09004 * 109.46615 * 180.02562 * 25 24 21 42 42 H 1.08991 * 109.47302 * 299.99793 * 25 24 21 43 43 H 1.09005 * 109.47293 * 60.00149 * 26 24 21 44 44 H 1.09005 * 109.47385 * 179.97438 * 26 24 21 45 45 H 1.08996 * 109.47558 * 300.00356 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 0.7471 3.1609 -1.2324 7 6 0.2129 3.5979 -0.0258 8 6 -0.6831 4.6493 -0.0060 9 6 -1.0514 5.2693 -1.1848 10 6 -0.5211 4.8373 -2.3939 11 8 -0.8833 5.4473 -3.5512 12 6 -0.4237 4.9070 -4.6978 13 1 0.1384 3.9852 -4.6731 14 6 -0.6727 5.5349 -5.9087 15 7 -1.3570 6.6581 -5.9387 16 14 -0.0366 4.7859 -7.4974 17 1 -1.0568 3.8597 -8.0513 18 1 0.2364 5.8659 -8.4793 19 1 1.2161 4.0365 -7.2245 20 6 0.3790 3.7815 -2.4175 21 6 3.5649 1.4443 0.1257 22 1 4.0785 0.6205 -0.3700 23 6 4.2698 2.8020 0.1531 24 6 4.1655 1.9682 1.4317 25 6 3.1952 2.4506 2.5119 26 6 5.4411 1.2954 1.9425 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0245 1.7927 -2.0941 33 1 0.4987 3.1154 0.8972 34 1 -1.0971 4.9869 0.9325 35 1 -1.7517 6.0912 -1.1659 36 1 -1.5315 7.0971 -6.7859 37 1 0.7957 3.4465 -3.3559 38 1 5.2473 2.8713 -0.3241 39 1 3.6473 3.6938 0.0812 40 1 2.5403 1.6300 2.8049 41 1 3.7589 2.7936 3.3796 42 1 2.5954 3.2723 2.1208 43 1 6.2310 1.4024 1.1990 44 1 5.7531 1.7678 2.8740 45 1 5.2485 0.2371 2.1181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397734229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:35 Heat of formation + Delta-G solvation = -6.189043 kcal Electronic energy + Delta-G solvation = -23233.867748 eV Core-core repulsion = 20023.587983 eV Total energy + Delta-G solvation = -3210.279765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97952 -40.08604 -38.37408 -36.34730 -34.27201 -33.47859 -30.83258 -30.40222 -29.32610 -28.50766 -27.30661 -26.84929 -23.55508 -22.81373 -22.53763 -21.23646 -19.83444 -19.53164 -18.94730 -17.08449 -16.99125 -16.51479 -16.06413 -16.05666 -15.46787 -15.46163 -15.24616 -14.86189 -14.53466 -14.40039 -14.10459 -14.00474 -13.55523 -13.44760 -13.32621 -13.06051 -12.95312 -12.76928 -12.62009 -12.47016 -12.29904 -12.18146 -12.13756 -12.03880 -11.81595 -11.40193 -11.28669 -10.99655 -10.78232 -10.64965 -10.35317 -9.09259 -8.45109 -8.15690 -6.13042 0.79337 0.95364 1.33346 1.44021 1.50949 2.18291 2.39521 2.89911 3.03787 3.29457 3.54952 3.60554 3.91272 3.93547 4.09382 4.21645 4.26281 4.30122 4.36829 4.42279 4.55865 4.63778 4.75148 4.79156 4.82521 4.87855 4.97147 4.98514 5.05200 5.08626 5.09771 5.12610 5.13699 5.15944 5.16838 5.24504 5.31968 5.37220 5.46086 5.50483 5.53366 5.77967 5.83470 6.06260 6.14676 6.67476 6.92802 7.00655 7.84638 8.78731 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.003946 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.872552 B = 7093.571990 C = 7448.012152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.173 3.827 4 H 0.096 0.904 5 N -0.731 5.731 6 C 0.269 3.731 7 C -0.266 4.266 8 C -0.025 4.025 9 C -0.266 4.266 10 C 0.154 3.846 11 O -0.234 6.234 12 C -0.409 4.409 13 H 0.097 0.903 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.017 2.983 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.255 1.255 20 C -0.319 4.319 21 C -0.158 4.158 22 H 0.111 0.889 23 C -0.176 4.176 24 C -0.108 4.108 25 C -0.123 4.123 26 C -0.113 4.113 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.395 0.605 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.104 0.896 36 H 0.272 0.728 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.704 -14.883 16.220 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.068 3.932 4 H 0.114 0.886 5 N -0.358 5.358 6 C 0.165 3.835 7 C -0.289 4.289 8 C -0.044 4.044 9 C -0.287 4.287 10 C 0.103 3.897 11 O -0.140 6.140 12 C -0.485 4.485 13 H 0.115 0.885 14 C -0.221 4.221 15 N -0.561 5.561 16 Si 0.837 3.163 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.178 1.178 20 C -0.343 4.343 21 C -0.177 4.177 22 H 0.129 0.871 23 C -0.213 4.213 24 C -0.109 4.109 25 C -0.180 4.180 26 C -0.170 4.170 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.229 0.771 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.528 -14.620 16.230 24.700 hybrid contribution 0.088 0.216 -1.662 1.679 sum 11.616 -14.404 14.568 23.551 Atomic orbital electron populations 1.21700 0.96127 1.01472 1.01293 1.21871 0.95730 0.95620 1.03023 1.20767 0.91690 0.93532 0.87204 0.88617 1.44683 1.47529 1.34497 1.09134 1.17474 0.87441 0.86220 0.92400 1.20525 1.07578 1.04605 0.96158 1.20797 0.94070 0.93107 0.96426 1.20218 1.09927 1.07566 0.90944 1.19636 0.91768 0.91058 0.87213 1.83947 1.66370 1.51223 1.12448 1.21756 1.36105 1.08266 0.82384 0.88532 1.26564 0.96885 0.96262 1.02382 1.70189 1.39477 1.18382 1.28052 0.84609 0.78953 0.77816 0.74941 1.18809 1.19490 1.17844 1.20490 1.10269 1.05500 0.98059 1.22848 0.94616 0.97939 1.02277 0.87115 1.23093 1.01558 0.94601 1.02033 1.21675 0.98622 1.01691 0.88883 1.21458 0.98269 1.00894 0.97351 1.21370 0.93866 1.00522 1.01232 0.91994 0.92653 0.94828 0.91821 0.89256 0.77056 0.84360 0.83287 0.87803 0.91916 0.87218 0.88901 0.90915 0.91025 0.90983 0.93324 0.92588 0.91314 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.80 71.99 0.71 -2.37 16 2 C -0.12 -2.18 5.59 30.60 0.17 -2.01 16 3 C 0.17 3.56 2.30 44.99 0.10 3.67 16 4 H 0.10 2.02 3.14 -2.39 -0.01 2.02 16 5 N -0.73 -20.15 4.43 -319.01 -1.41 -21.56 16 6 C 0.27 9.65 6.61 38.20 0.25 9.90 16 7 C -0.27 -8.68 9.30 22.43 0.21 -8.47 16 8 C -0.03 -0.89 10.03 22.24 0.22 -0.67 16 9 C -0.27 -12.02 9.99 22.42 0.22 -11.80 16 10 C 0.15 8.10 6.64 22.56 0.15 8.25 16 11 O -0.23 -14.68 9.76 -22.63 -0.22 -14.90 16 12 C -0.41 -24.71 9.45 67.92 0.64 -24.07 16 13 H 0.10 5.42 5.28 -2.91 -0.02 5.40 16 14 C -0.02 -1.40 5.49 84.84 0.47 -0.93 16 15 N -0.92 -58.18 13.67 21.61 0.30 -57.89 16 16 Si 1.02 44.17 29.55 68.60 2.03 46.20 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 20 C -0.32 -14.61 8.98 22.52 0.20 -14.40 16 21 C -0.16 -2.88 5.08 -10.79 -0.05 -2.94 16 22 H 0.11 1.84 8.12 -2.38 -0.02 1.82 16 23 C -0.18 -3.71 9.42 30.60 0.29 -3.42 16 24 C -0.11 -1.76 2.70 -52.18 -0.14 -1.90 16 25 C -0.12 -1.88 8.35 71.98 0.60 -1.28 16 26 C -0.11 -1.41 9.85 71.98 0.71 -0.71 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.03 0.89 7.71 -2.39 -0.02 0.87 16 30 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.40 10.73 8.84 -92.71 -0.82 9.91 16 33 H 0.14 3.60 5.73 -2.91 -0.02 3.59 16 34 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 36 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.11 5.20 5.70 -2.91 -0.02 5.18 16 38 H 0.09 1.87 8.05 -2.39 -0.02 1.85 16 39 H 0.07 1.92 8.05 -2.39 -0.02 1.90 16 40 H 0.07 0.94 8.00 -2.39 -0.02 0.92 16 41 H 0.07 0.94 7.93 -2.39 -0.02 0.92 16 42 H 0.05 0.89 7.41 -2.39 -0.02 0.88 16 43 H 0.06 0.71 7.90 -2.38 -0.02 0.69 16 44 H 0.07 0.76 7.93 -2.38 -0.02 0.74 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -71.72 363.22 5.60 -66.12 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.16 Total: 35.20 kcal Atomic # 6 Polarization: -57.92 SS G_CDS: 4.75 Total: -53.17 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.12 Total: -79.45 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.22 Total: -14.90 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -71.72 5.60 -66.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397734229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.930 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds