Wall clock time and date at job start Tue Mar 31 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46842 * 2 1 4 4 H 1.08997 * 109.47601 * 57.24191 * 3 2 1 5 5 N 1.46508 * 109.47321 * 297.23629 * 3 2 1 6 6 C 1.39670 * 119.99517 * 96.25769 * 5 3 2 7 7 C 1.39006 * 120.04320 * 358.82575 * 6 5 3 8 8 C 1.38149 * 120.06308 * 179.73894 * 7 6 5 9 9 C 1.38178 * 120.14240 * 0.51644 * 8 7 6 10 10 C 1.38918 * 120.07663 * 359.76136 * 9 8 7 11 11 O 1.35742 * 120.03040 * 179.97438 * 10 9 8 12 12 C 1.34828 * 117.00320 * 185.36388 * 11 10 9 13 13 H 1.08000 * 119.99597 * 4.93116 * 12 11 10 14 14 C 1.38651 * 120.00362 * 184.93699 * 12 11 10 15 15 N 1.31560 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00258 * 179.97438 * 14 12 11 17 17 H 1.48511 * 109.46905 * 59.99838 * 16 14 12 18 18 H 1.48497 * 109.47261 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47153 * 300.00107 * 16 14 12 20 20 C 1.38754 * 120.03894 * 179.09981 * 6 5 3 21 21 C 1.53004 * 109.46831 * 177.24145 * 3 2 1 22 22 H 1.08999 * 115.54876 * 34.27739 * 21 3 2 23 23 C 1.52999 * 117.49944 * 248.60720 * 21 3 2 24 24 C 1.53002 * 60.00062 * 252.51283 * 23 21 3 25 25 C 1.53001 * 117.49394 * 252.51354 * 24 23 21 26 26 C 1.52999 * 117.50256 * 107.49332 * 24 23 21 27 27 H 1.09002 * 109.46837 * 304.36581 * 1 2 3 28 28 H 1.09002 * 109.46988 * 64.35683 * 1 2 3 29 29 H 1.08995 * 109.46943 * 184.35875 * 1 2 3 30 30 H 1.08994 * 109.46584 * 239.99998 * 2 1 3 31 31 H 1.08994 * 109.46793 * 120.00016 * 2 1 3 32 32 H 0.96998 * 119.99880 * 276.26150 * 5 3 2 33 33 H 1.07999 * 119.96794 * 359.97438 * 7 6 5 34 34 H 1.07993 * 119.93019 * 180.27541 * 8 7 6 35 35 H 1.08001 * 119.95990 * 179.74179 * 9 8 7 36 36 H 0.97000 * 120.00350 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.06702 * 359.97438 * 20 6 5 38 38 H 1.08998 * 117.49639 * 359.97438 * 23 21 3 39 39 H 1.08997 * 117.49924 * 144.99778 * 23 21 3 40 40 H 1.09004 * 109.47315 * 128.62366 * 25 24 23 41 41 H 1.09010 * 109.46879 * 248.62044 * 25 24 23 42 42 H 1.08998 * 109.47523 * 8.61811 * 25 24 23 43 43 H 1.09004 * 109.46873 * 351.37127 * 26 24 23 44 44 H 1.08995 * 109.47193 * 111.37696 * 26 24 23 45 45 H 1.09001 * 109.46812 * 231.37951 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6369 1.9704 0.8642 5 7 1.6068 2.1137 -1.2281 6 6 0.4527 2.9004 -1.2241 7 6 -0.2989 3.0274 -0.0616 8 6 -1.4375 3.8097 -0.0557 9 6 -1.8388 4.4596 -1.2072 10 6 -1.0953 4.3322 -2.3737 11 8 -1.4907 4.9706 -3.5045 12 6 -0.7894 4.7170 -4.6277 13 1 -0.0064 3.9732 -4.6190 14 6 -1.0733 5.4112 -5.7939 15 7 -2.0274 6.3169 -5.8046 16 14 -0.1012 5.0603 -7.3500 17 1 -0.2727 3.6349 -7.7300 18 1 -0.5957 5.9281 -8.4489 19 1 1.3374 5.3384 -7.1082 20 6 0.0519 3.5515 -2.3819 21 6 3.5685 1.4430 0.0694 22 1 4.0629 0.6218 -0.4494 23 6 4.2170 1.9585 1.3557 24 6 4.2747 2.8003 0.0794 25 6 5.6212 2.9012 -0.6400 26 6 3.3985 4.0531 0.0191 27 1 -0.3633 0.5801 0.8483 28 1 -0.3633 0.4447 -0.9265 29 1 -0.3633 -1.0247 0.0781 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1214 2.0116 -2.0440 33 1 0.0097 2.5170 0.8388 34 1 -2.0173 3.9105 0.8498 35 1 -2.7317 5.0672 -1.2003 36 1 -2.2262 6.8023 -6.6206 37 1 0.6318 3.4513 -3.2875 38 1 3.5548 2.2977 2.1523 39 1 5.1382 1.4765 1.6831 40 1 5.4901 2.6525 -1.6932 41 1 6.0050 3.9177 -0.5518 42 1 6.3279 2.2055 -0.1877 43 1 2.7294 4.0702 0.8794 44 1 4.0315 4.9403 0.0334 45 1 2.8102 4.0412 -0.8984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397734232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:38 Heat of formation + Delta-G solvation = 13.081922 kcal Electronic energy + Delta-G solvation = -23531.380721 eV Core-core repulsion = 20321.936609 eV Total energy + Delta-G solvation = -3209.444113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.75132 -38.62216 -36.84291 -34.97726 -32.43244 -32.04621 -29.66399 -28.90061 -28.19266 -27.42817 -25.66679 -25.12070 -22.08895 -21.92375 -21.08553 -19.98160 -18.80651 -17.75938 -17.23645 -15.88331 -15.36717 -15.23771 -14.65476 -14.43605 -14.21663 -14.04356 -13.70415 -13.58525 -13.38677 -12.97911 -12.84731 -12.65493 -12.29050 -12.26279 -12.02425 -11.87878 -11.59417 -11.50135 -11.26889 -11.20332 -11.00914 -10.89507 -10.77968 -10.71222 -10.44520 -10.28573 -10.02867 -9.63749 -9.35036 -9.13583 -8.70198 -7.29212 -6.65658 -6.37058 -3.95954 2.44888 2.63973 3.16466 3.17949 3.20073 3.43129 4.02161 4.07229 4.41871 4.68349 4.76523 4.83911 5.06586 5.09745 5.18460 5.22593 5.27487 5.40800 5.47834 5.59291 5.62524 5.67305 5.73909 5.82422 5.86943 5.88839 5.98287 6.01780 6.04620 6.09327 6.12207 6.20779 6.29178 6.35089 6.45979 6.51483 6.52259 6.72883 6.73799 7.11724 7.20148 7.45942 7.55079 7.75226 8.09473 8.11554 8.31342 9.09249 9.82970 10.81412 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.004648 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.404002 B = 6022.110259 C = 6857.185618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.187 3.813 4 H 0.083 0.917 5 N -0.741 5.741 6 C 0.258 3.742 7 C -0.279 4.279 8 C -0.041 4.041 9 C -0.239 4.239 10 C 0.190 3.810 11 O -0.180 6.180 12 C -0.387 4.387 13 H 0.089 0.911 14 C 0.038 3.962 15 N -0.865 5.865 16 Si 0.938 3.062 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.271 1.271 20 C -0.304 4.304 21 C -0.160 4.160 22 H 0.102 0.898 23 C -0.168 4.168 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.116 4.116 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.393 0.607 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.269 0.731 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.646 -9.908 11.956 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.081 3.919 4 H 0.101 0.899 5 N -0.371 5.371 6 C 0.156 3.844 7 C -0.302 4.302 8 C -0.060 4.060 9 C -0.260 4.260 10 C 0.135 3.865 11 O -0.083 6.083 12 C -0.463 4.463 13 H 0.107 0.893 14 C -0.165 4.165 15 N -0.501 5.501 16 Si 0.763 3.237 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.197 1.197 20 C -0.328 4.328 21 C -0.179 4.179 22 H 0.120 0.880 23 C -0.206 4.206 24 C -0.112 4.112 25 C -0.172 4.172 26 C -0.174 4.174 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.227 0.773 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.359 -9.642 11.905 19.071 hybrid contribution 0.801 -0.351 -1.096 1.402 sum 12.160 -9.993 10.809 19.093 Atomic orbital electron populations 1.21817 0.95112 1.00624 1.03100 1.21980 0.96876 0.96854 1.01449 1.20369 0.90075 0.92384 0.89097 0.89867 1.44564 1.27239 1.54036 1.11239 1.17392 0.85338 0.88412 0.93225 1.20131 1.01133 1.11891 0.97023 1.20358 0.94992 0.94486 0.96155 1.20003 1.03775 1.10167 0.92076 1.19074 0.90678 0.89319 0.87393 1.83993 1.51701 1.58589 1.14003 1.21223 1.17717 1.22071 0.85332 0.89326 1.25245 0.97060 0.95582 0.98646 1.70030 1.28690 1.22818 1.28561 0.85834 0.79297 0.78552 0.80027 1.19636 1.20351 1.19655 1.20491 1.03101 1.10853 0.98332 1.22775 0.94956 0.97918 1.02234 0.88004 1.23259 1.02304 1.03798 0.91203 1.21510 0.97215 0.92597 0.99920 1.21358 0.94060 1.01818 0.99947 1.21426 0.98347 0.94144 1.03435 0.92562 0.91656 0.93739 0.92225 0.91973 0.77304 0.87730 0.87493 0.87168 0.92127 0.86004 0.88863 0.89055 0.92238 0.92156 0.92853 0.92731 0.93012 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.49 37.16 0.32 -1.53 16 2 C -0.13 -1.45 5.61 -26.73 -0.15 -1.60 16 3 C 0.19 2.17 1.71 -67.93 -0.12 2.05 16 4 H 0.08 1.04 5.54 -51.93 -0.29 0.75 16 5 N -0.74 -10.41 3.11 -52.18 -0.16 -10.57 16 6 C 0.26 4.56 4.95 -83.81 -0.42 4.14 16 7 C -0.28 -4.76 7.71 -39.33 -0.30 -5.06 16 8 C -0.04 -0.75 10.03 -39.64 -0.40 -1.14 16 9 C -0.24 -5.21 9.99 -39.35 -0.39 -5.61 16 10 C 0.19 4.66 6.64 -39.14 -0.26 4.40 16 11 O -0.18 -5.22 9.76 0.08 0.00 -5.22 16 12 C -0.39 -10.95 9.45 30.88 0.29 -10.66 16 13 H 0.09 2.33 5.28 -52.49 -0.28 2.05 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.87 -25.77 13.67 55.48 0.76 -25.01 16 16 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 C -0.30 -6.58 8.98 -39.20 -0.35 -6.93 16 21 C -0.16 -1.63 5.01 -90.62 -0.45 -2.09 16 22 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 23 C -0.17 -1.59 9.47 -26.73 -0.25 -1.84 16 24 C -0.11 -1.20 2.67 -154.51 -0.41 -1.61 16 25 C -0.11 -1.10 9.85 37.16 0.37 -0.73 16 26 C -0.12 -1.48 8.69 37.16 0.32 -1.15 16 27 H 0.06 0.69 6.62 -51.93 -0.34 0.35 16 28 H 0.06 0.98 6.81 -51.93 -0.35 0.63 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.39 5.42 8.73 -40.82 -0.36 5.07 16 33 H 0.10 1.56 4.72 -52.49 -0.25 1.32 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.12 2.69 5.70 -52.48 -0.30 2.39 16 38 H 0.09 0.88 7.96 -51.93 -0.41 0.47 16 39 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.56 7.92 -51.92 -0.41 0.15 16 42 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 43 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 44 H 0.05 0.62 7.92 -51.93 -0.41 0.21 16 45 H 0.08 1.15 6.09 -51.93 -0.32 0.84 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -29.85 354.27 -8.44 -38.28 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.04 Total: 9.75 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -2.31 Total: -28.38 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.60 Total: -35.58 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: 0.00 Total: -5.22 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.85 -8.44 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397734232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.364 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds