Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46842 * 2 1 4 4 H 1.08997 * 109.47601 * 57.24191 * 3 2 1 5 5 N 1.46508 * 109.47321 * 297.23629 * 3 2 1 6 6 C 1.39670 * 119.99517 * 96.25769 * 5 3 2 7 7 C 1.39006 * 120.04320 * 358.82575 * 6 5 3 8 8 C 1.38149 * 120.06308 * 179.73894 * 7 6 5 9 9 C 1.38178 * 120.14240 * 0.51644 * 8 7 6 10 10 C 1.38918 * 120.07663 * 359.76136 * 9 8 7 11 11 O 1.35742 * 120.03040 * 179.97438 * 10 9 8 12 12 C 1.34828 * 117.00320 * 185.36388 * 11 10 9 13 13 H 1.08000 * 119.99597 * 4.93116 * 12 11 10 14 14 C 1.38651 * 120.00362 * 184.93699 * 12 11 10 15 15 N 1.31560 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00258 * 179.97438 * 14 12 11 17 17 H 1.48511 * 109.46905 * 59.99838 * 16 14 12 18 18 H 1.48497 * 109.47261 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47153 * 300.00107 * 16 14 12 20 20 C 1.38754 * 120.03894 * 179.09981 * 6 5 3 21 21 C 1.53004 * 109.46831 * 177.24145 * 3 2 1 22 22 H 1.08999 * 115.54876 * 34.27739 * 21 3 2 23 23 C 1.52999 * 117.49944 * 248.60720 * 21 3 2 24 24 C 1.53002 * 60.00062 * 252.51283 * 23 21 3 25 25 C 1.53001 * 117.49394 * 252.51354 * 24 23 21 26 26 C 1.52999 * 117.50256 * 107.49332 * 24 23 21 27 27 H 1.09002 * 109.46837 * 304.36581 * 1 2 3 28 28 H 1.09002 * 109.46988 * 64.35683 * 1 2 3 29 29 H 1.08995 * 109.46943 * 184.35875 * 1 2 3 30 30 H 1.08994 * 109.46584 * 239.99998 * 2 1 3 31 31 H 1.08994 * 109.46793 * 120.00016 * 2 1 3 32 32 H 0.96998 * 119.99880 * 276.26150 * 5 3 2 33 33 H 1.07999 * 119.96794 * 359.97438 * 7 6 5 34 34 H 1.07993 * 119.93019 * 180.27541 * 8 7 6 35 35 H 1.08001 * 119.95990 * 179.74179 * 9 8 7 36 36 H 0.97000 * 120.00350 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.06702 * 359.97438 * 20 6 5 38 38 H 1.08998 * 117.49639 * 359.97438 * 23 21 3 39 39 H 1.08997 * 117.49924 * 144.99778 * 23 21 3 40 40 H 1.09004 * 109.47315 * 128.62366 * 25 24 23 41 41 H 1.09010 * 109.46879 * 248.62044 * 25 24 23 42 42 H 1.08998 * 109.47523 * 8.61811 * 25 24 23 43 43 H 1.09004 * 109.46873 * 351.37127 * 26 24 23 44 44 H 1.08995 * 109.47193 * 111.37696 * 26 24 23 45 45 H 1.09001 * 109.46812 * 231.37951 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6369 1.9704 0.8642 5 7 1.6068 2.1137 -1.2281 6 6 0.4527 2.9004 -1.2241 7 6 -0.2989 3.0274 -0.0616 8 6 -1.4375 3.8097 -0.0557 9 6 -1.8388 4.4596 -1.2072 10 6 -1.0953 4.3322 -2.3737 11 8 -1.4907 4.9706 -3.5045 12 6 -0.7894 4.7170 -4.6277 13 1 -0.0064 3.9732 -4.6190 14 6 -1.0733 5.4112 -5.7939 15 7 -2.0274 6.3169 -5.8046 16 14 -0.1012 5.0603 -7.3500 17 1 -0.2727 3.6349 -7.7300 18 1 -0.5957 5.9281 -8.4489 19 1 1.3374 5.3384 -7.1082 20 6 0.0519 3.5515 -2.3819 21 6 3.5685 1.4430 0.0694 22 1 4.0629 0.6218 -0.4494 23 6 4.2170 1.9585 1.3557 24 6 4.2747 2.8003 0.0794 25 6 5.6212 2.9012 -0.6400 26 6 3.3985 4.0531 0.0191 27 1 -0.3633 0.5801 0.8483 28 1 -0.3633 0.4447 -0.9265 29 1 -0.3633 -1.0247 0.0781 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1214 2.0116 -2.0440 33 1 0.0097 2.5170 0.8388 34 1 -2.0173 3.9105 0.8498 35 1 -2.7317 5.0672 -1.2003 36 1 -2.2262 6.8023 -6.6206 37 1 0.6318 3.4513 -3.2875 38 1 3.5548 2.2977 2.1523 39 1 5.1382 1.4765 1.6831 40 1 5.4901 2.6525 -1.6932 41 1 6.0050 3.9177 -0.5518 42 1 6.3279 2.2055 -0.1877 43 1 2.7294 4.0702 0.8794 44 1 4.0315 4.9403 0.0334 45 1 2.8102 4.0412 -0.8984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397734232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = -2.842900 kcal Electronic energy + Delta-G solvation = -23532.071274 eV Core-core repulsion = 20321.936609 eV Total energy + Delta-G solvation = -3210.134665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02699 -40.07222 -38.36211 -36.26192 -34.23916 -33.50590 -30.65838 -30.46822 -29.58751 -28.34108 -27.31523 -26.56897 -23.53333 -23.04294 -22.36718 -21.25953 -19.88497 -19.40245 -18.95276 -17.12632 -16.91316 -16.55081 -16.03940 -15.91498 -15.54578 -15.42503 -15.07163 -14.96864 -14.48959 -14.40307 -14.21748 -13.83174 -13.56967 -13.46109 -13.25508 -13.10707 -12.86892 -12.68556 -12.59139 -12.45303 -12.32349 -12.17134 -12.12530 -12.07473 -11.78794 -11.42390 -11.27428 -11.03417 -10.84181 -10.61000 -10.18491 -9.05248 -8.43517 -8.10488 -6.11277 0.82447 0.99020 1.33622 1.45575 1.49999 2.19196 2.41449 2.91918 3.05931 3.32371 3.55735 3.62996 3.85595 4.01694 4.15877 4.21902 4.27639 4.29500 4.37532 4.49592 4.54742 4.66855 4.75098 4.80040 4.82138 4.84790 4.96588 4.98115 5.06929 5.08574 5.11930 5.15441 5.17587 5.18646 5.19039 5.28297 5.35654 5.39759 5.50079 5.52446 5.55485 5.80246 5.86414 6.08242 6.17362 6.70688 6.95481 7.02347 7.86940 8.80122 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.004648 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.404002 B = 6022.110259 C = 6857.185618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.185 3.815 4 H 0.081 0.919 5 N -0.729 5.729 6 C 0.275 3.725 7 C -0.260 4.260 8 C -0.028 4.028 9 C -0.266 4.266 10 C 0.153 3.847 11 O -0.235 6.235 12 C -0.407 4.407 13 H 0.097 0.903 14 C -0.024 4.024 15 N -0.923 5.923 16 Si 1.016 2.984 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.258 1.258 20 C -0.317 4.317 21 C -0.158 4.158 22 H 0.114 0.886 23 C -0.150 4.150 24 C -0.125 4.125 25 C -0.113 4.113 26 C -0.114 4.114 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.395 0.605 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.101 0.899 36 H 0.271 0.729 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.287 -12.586 14.212 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.080 3.920 4 H 0.099 0.901 5 N -0.356 5.356 6 C 0.170 3.830 7 C -0.283 4.283 8 C -0.047 4.047 9 C -0.287 4.287 10 C 0.102 3.898 11 O -0.141 6.141 12 C -0.483 4.483 13 H 0.114 0.886 14 C -0.221 4.221 15 N -0.562 5.562 16 Si 0.835 3.165 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.183 1.183 20 C -0.341 4.341 21 C -0.177 4.177 22 H 0.132 0.868 23 C -0.188 4.188 24 C -0.126 4.126 25 C -0.170 4.170 26 C -0.171 4.171 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.047 -12.376 14.221 23.511 hybrid contribution 0.061 0.329 -1.459 1.497 sum 14.109 -12.047 12.763 22.518 Atomic orbital electron populations 1.21799 0.96228 1.01237 1.01392 1.21938 0.95698 0.96111 1.02763 1.20569 0.91409 0.92638 0.87344 0.90061 1.44700 1.25625 1.52673 1.12621 1.17372 0.86148 0.87403 0.92069 1.20543 0.99835 1.10222 0.97661 1.20779 0.95195 0.92671 0.96047 1.20194 1.04005 1.11785 0.92745 1.19633 0.92491 0.90421 0.87275 1.83947 1.53672 1.61124 1.15371 1.21699 1.17963 1.22668 0.86009 0.88552 1.26544 0.98170 0.95141 1.02242 1.70186 1.31305 1.24891 1.29780 0.84691 0.77911 0.78928 0.74931 1.18318 1.19560 1.18276 1.20468 1.02590 1.11642 0.99442 1.22722 0.93613 0.97918 1.03422 0.86805 1.23335 1.02830 1.02158 0.90436 1.21486 0.97462 0.91799 1.01809 1.21347 0.93802 1.02219 0.99640 1.21350 0.98397 0.95662 1.01690 0.92284 0.94832 0.92496 0.92090 0.89454 0.77043 0.84288 0.83559 0.88068 0.91972 0.87320 0.88572 0.87110 0.92822 0.92380 0.91171 0.93119 0.92983 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.49 71.98 0.61 -2.61 16 2 C -0.13 -2.25 5.61 30.60 0.17 -2.08 16 3 C 0.19 3.66 1.71 44.99 0.08 3.74 16 4 H 0.08 1.68 5.54 -2.39 -0.01 1.67 16 5 N -0.73 -19.23 3.11 -319.00 -0.99 -20.22 16 6 C 0.27 9.50 4.95 38.20 0.19 9.69 16 7 C -0.26 -8.25 7.71 22.43 0.17 -8.08 16 8 C -0.03 -0.99 10.03 22.23 0.22 -0.76 16 9 C -0.27 -12.01 9.99 22.42 0.22 -11.78 16 10 C 0.15 7.96 6.64 22.56 0.15 8.11 16 11 O -0.23 -14.70 9.76 -22.63 -0.22 -14.92 16 12 C -0.41 -24.49 9.45 67.92 0.64 -23.84 16 13 H 0.10 5.37 5.28 -2.91 -0.02 5.35 16 14 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 15 N -0.92 -58.18 13.67 21.61 0.30 -57.88 16 16 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 20 C -0.32 -14.25 8.98 22.52 0.20 -14.05 16 21 C -0.16 -2.62 5.01 -10.79 -0.05 -2.67 16 22 H 0.11 1.70 8.11 -2.39 -0.02 1.68 16 23 C -0.15 -2.18 9.47 30.59 0.29 -1.89 16 24 C -0.13 -2.31 2.67 -52.18 -0.14 -2.45 16 25 C -0.11 -1.87 9.85 71.98 0.71 -1.16 16 26 C -0.11 -2.72 8.69 71.98 0.63 -2.09 16 27 H 0.06 1.22 6.62 -2.39 -0.02 1.20 16 28 H 0.03 0.93 6.81 -2.39 -0.02 0.91 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.40 10.43 8.73 -92.71 -0.81 9.62 16 33 H 0.14 3.53 4.72 -2.91 -0.01 3.52 16 34 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.11 5.07 5.70 -2.91 -0.02 5.05 16 38 H 0.10 1.38 7.96 -2.39 -0.02 1.36 16 39 H 0.11 1.24 8.05 -2.39 -0.02 1.22 16 40 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 41 H 0.06 0.97 7.92 -2.38 -0.02 0.95 16 42 H 0.07 0.92 7.90 -2.39 -0.02 0.90 16 43 H 0.05 1.21 7.77 -2.39 -0.02 1.19 16 44 H 0.05 1.21 7.92 -2.39 -0.02 1.19 16 45 H 0.05 1.45 6.09 -2.39 -0.01 1.43 16 Total: -1.00 -70.92 354.27 5.85 -65.07 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.18 Total: 34.72 kcal Atomic # 6 Polarization: -57.43 SS G_CDS: 4.56 Total: -52.87 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -0.70 Total: -78.10 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.92 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.92 5.85 -65.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397734232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.225 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds