Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46763 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00192 * 3 2 1 5 5 N 1.46500 * 109.47264 * 65.00323 * 3 2 1 6 6 C 1.39679 * 119.99564 * 275.00036 * 5 3 2 7 7 C 1.38999 * 120.04428 * 359.97438 * 6 5 3 8 8 C 1.38147 * 120.06445 * 179.97438 * 7 6 5 9 9 C 1.38172 * 120.14289 * 359.97438 * 8 7 6 10 10 C 1.38919 * 120.07909 * 0.02562 * 9 8 7 11 11 O 1.35744 * 120.03000 * 179.97438 * 10 9 8 12 12 C 1.34837 * 116.99736 * 174.48571 * 11 10 9 13 13 H 1.08000 * 119.99865 * 5.07642 * 12 11 10 14 14 C 1.38651 * 119.99853 * 185.08154 * 12 11 10 15 15 N 1.31558 * 120.00254 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00025 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47090 * 89.99853 * 16 14 12 18 18 H 1.48495 * 109.47302 * 209.99946 * 16 14 12 19 19 H 1.48507 * 109.46962 * 330.00084 * 16 14 12 20 20 C 1.38752 * 120.03643 * 179.72307 * 6 5 3 21 21 C 1.53001 * 109.46929 * 185.00206 * 3 2 1 22 22 H 1.08997 * 115.55313 * 325.66799 * 21 3 2 23 23 C 1.52999 * 117.49740 * 111.37711 * 21 3 2 24 24 C 1.53000 * 117.49630 * 179.97438 * 21 3 2 25 25 C 1.53006 * 117.49990 * 359.97438 * 24 21 3 26 26 C 1.53002 * 117.50006 * 144.99799 * 24 21 3 27 27 H 1.09000 * 109.47395 * 60.00206 * 1 2 3 28 28 H 1.08995 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47271 * 299.99624 * 1 2 3 30 30 H 1.09000 * 109.47395 * 119.99794 * 2 1 3 31 31 H 1.09000 * 109.47271 * 240.00375 * 2 1 3 32 32 H 0.96994 * 120.00408 * 94.99842 * 5 3 2 33 33 H 1.08006 * 119.96699 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.93074 * 179.97438 * 8 7 6 35 35 H 1.07997 * 119.96301 * 180.02562 * 9 8 7 36 36 H 0.97001 * 120.00017 * 180.02562 * 15 14 12 37 37 H 1.08006 * 120.07298 * 359.97438 * 20 6 5 38 38 H 1.08995 * 117.50093 * 214.97203 * 23 21 3 39 39 H 1.08996 * 117.50106 * 0.02562 * 23 21 3 40 40 H 1.08997 * 109.46866 * 60.00165 * 25 24 21 41 41 H 1.09001 * 109.47043 * 179.97438 * 25 24 21 42 42 H 1.08999 * 109.47255 * 299.99965 * 25 24 21 43 43 H 1.08999 * 109.47048 * 59.99548 * 26 24 21 44 44 H 1.08998 * 109.47067 * 179.97438 * 26 24 21 45 45 H 1.09003 * 109.46990 * 299.99792 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.3908 2.6850 1.3711 7 6 -0.4975 2.6491 0.3026 8 6 -1.7456 3.2295 0.4203 9 6 -2.1152 3.8467 1.5999 10 6 -1.2322 3.8861 2.6716 11 8 -1.5962 4.4932 3.8299 12 6 -0.7398 4.3970 4.8668 13 1 0.2227 3.9264 4.7304 14 6 -1.0948 4.9021 6.1083 15 7 -2.2670 5.4756 6.2744 16 14 0.0914 4.7681 7.5451 17 1 0.9625 5.9703 7.5815 18 1 -0.6756 4.6741 8.8132 19 1 0.9304 3.5536 7.3828 20 6 0.0207 3.3005 2.5583 21 6 3.5648 1.4445 -0.1258 22 1 4.0780 0.6172 0.3645 23 6 4.1655 1.9765 -1.4284 24 6 4.2703 2.8019 -0.1450 25 6 3.3969 4.0537 -0.0376 26 6 5.6423 2.8947 0.5259 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.2718 2.1233 1.9978 33 1 -0.2116 2.1670 -0.6206 34 1 -2.4338 3.2007 -0.4114 35 1 -3.0918 4.2992 1.6889 36 1 -2.5152 5.8293 7.1429 37 1 0.7073 3.3259 3.3917 38 1 5.0741 1.4993 -1.7955 39 1 3.4744 2.3256 -2.1957 40 1 2.8426 4.0304 0.9006 41 1 4.0292 4.9412 -0.0638 42 1 2.6969 4.0811 -0.8727 43 1 6.3319 2.2047 0.0396 44 1 6.0228 3.9121 0.4356 45 1 5.5497 2.6331 1.5800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397734234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = 18.756634 kcal Electronic energy + Delta-G solvation = -23510.446268 eV Core-core repulsion = 20301.248229 eV Total energy + Delta-G solvation = -3209.198039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.81728 -38.65293 -36.94503 -34.90518 -32.40188 -32.08387 -29.74383 -28.84340 -28.34838 -27.46774 -25.63698 -25.02534 -22.19360 -21.90678 -21.09630 -19.91570 -18.85082 -17.75479 -17.21888 -15.96138 -15.38628 -15.29863 -14.61599 -14.47319 -14.18314 -14.11853 -13.70418 -13.57259 -13.34542 -12.96091 -12.88438 -12.69907 -12.30728 -12.23952 -12.08810 -11.90878 -11.59847 -11.45989 -11.30065 -11.25834 -11.00606 -10.83412 -10.76158 -10.68264 -10.41843 -10.25092 -10.03093 -9.64896 -9.31511 -9.16990 -8.69413 -7.27856 -6.62768 -6.36653 -3.95549 2.44934 2.64105 3.16458 3.17404 3.21680 3.39527 4.02025 4.05728 4.39414 4.64749 4.76352 4.80526 5.01801 5.08568 5.18479 5.21209 5.28123 5.43086 5.46558 5.56891 5.58355 5.64981 5.75991 5.81811 5.84312 5.87076 5.92649 5.98569 6.02899 6.09989 6.12749 6.16577 6.32122 6.35093 6.42534 6.48218 6.60358 6.73217 6.74060 7.12119 7.21005 7.46228 7.55941 7.75277 8.10103 8.11274 8.31067 9.09793 9.83567 10.81910 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.004658 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.708999 B = 6009.208870 C = 7046.407219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.133 4.133 3 C 0.190 3.810 4 H 0.076 0.924 5 N -0.742 5.742 6 C 0.254 3.746 7 C -0.279 4.279 8 C -0.044 4.044 9 C -0.239 4.239 10 C 0.189 3.811 11 O -0.180 6.180 12 C -0.387 4.387 13 H 0.090 0.910 14 C 0.038 3.962 15 N -0.866 5.866 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.303 4.303 21 C -0.158 4.158 22 H 0.104 0.896 23 C -0.166 4.166 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.393 0.607 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.268 0.732 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.279 -8.107 -13.152 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.084 3.916 4 H 0.094 0.906 5 N -0.372 5.372 6 C 0.152 3.848 7 C -0.302 4.302 8 C -0.063 4.063 9 C -0.259 4.259 10 C 0.135 3.865 11 O -0.084 6.084 12 C -0.463 4.463 13 H 0.107 0.893 14 C -0.166 4.166 15 N -0.501 5.501 16 Si 0.763 3.237 17 H -0.200 1.200 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.327 4.327 21 C -0.177 4.177 22 H 0.122 0.878 23 C -0.204 4.204 24 C -0.115 4.115 25 C -0.174 4.174 26 C -0.172 4.172 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.947 -7.934 -13.065 19.400 hybrid contribution 0.919 -0.211 1.008 1.380 sum 12.866 -8.145 -12.057 19.422 Atomic orbital electron populations 1.22167 0.95091 1.00788 1.03349 1.22012 0.97001 0.96798 1.01422 1.20310 0.90505 0.92581 0.88204 0.90564 1.44607 1.14729 1.62807 1.15079 1.17406 0.84322 0.89994 0.93040 1.20344 0.96329 1.14510 0.98993 1.20357 0.95112 0.95134 0.95684 1.20010 1.00482 1.11762 0.93683 1.19061 0.91364 0.88718 0.87394 1.83986 1.44820 1.62991 1.16576 1.21279 0.98050 1.40101 0.86909 0.89254 1.25248 0.97071 0.96478 0.97774 1.70042 1.19661 1.36056 1.24369 0.85759 0.79219 0.78864 0.79836 1.20007 1.20345 1.19357 1.20494 0.99697 1.13975 0.98524 1.22717 0.94948 0.97805 1.02250 0.87837 1.23253 1.02540 1.03667 0.90923 1.21525 0.97023 0.92674 1.00256 1.21422 0.98302 0.94261 1.03372 1.21362 0.93766 1.01873 1.00218 0.92561 0.93982 0.90497 0.92141 0.92090 0.77247 0.87077 0.87481 0.87175 0.92196 0.86005 0.88968 0.88798 0.90634 0.92898 0.92698 0.92787 0.92125 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.22 37.16 0.31 -1.70 16 2 C -0.13 -1.50 5.59 -26.73 -0.15 -1.65 16 3 C 0.19 2.22 1.75 -67.93 -0.12 2.10 16 4 H 0.08 0.96 6.11 -51.93 -0.32 0.64 16 5 N -0.74 -10.51 3.22 -52.18 -0.17 -10.68 16 6 C 0.25 4.52 5.43 -83.81 -0.46 4.07 16 7 C -0.28 -4.76 6.72 -39.33 -0.26 -5.02 16 8 C -0.04 -0.80 10.03 -39.64 -0.40 -1.20 16 9 C -0.24 -5.21 9.99 -39.35 -0.39 -5.60 16 10 C 0.19 4.66 6.65 -39.13 -0.26 4.40 16 11 O -0.18 -5.26 9.76 0.05 0.00 -5.26 16 12 C -0.39 -10.98 9.49 30.88 0.29 -10.69 16 13 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 14 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 15 N -0.87 -25.82 13.67 55.48 0.76 -25.06 16 16 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.30 -6.59 9.01 -39.20 -0.35 -6.94 16 21 C -0.16 -1.59 4.95 -90.62 -0.45 -2.04 16 22 H 0.10 1.00 8.11 -51.93 -0.42 0.57 16 23 C -0.17 -1.52 9.46 -26.75 -0.25 -1.77 16 24 C -0.11 -1.17 2.67 -154.53 -0.41 -1.58 16 25 C -0.12 -1.39 8.69 37.16 0.32 -1.07 16 26 C -0.12 -1.04 9.85 37.16 0.37 -0.68 16 27 H 0.06 0.69 6.35 -51.93 -0.33 0.36 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.20 5.39 -51.93 -0.28 0.92 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.39 5.47 8.55 -40.82 -0.35 5.12 16 33 H 0.11 1.65 4.00 -52.48 -0.21 1.44 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 2.37 8.06 -52.49 -0.42 1.94 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 37 H 0.12 2.70 5.63 -52.48 -0.30 2.41 16 38 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 39 H 0.09 0.86 7.95 -51.93 -0.41 0.45 16 40 H 0.07 1.06 6.52 -51.93 -0.34 0.72 16 41 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 42 H 0.05 0.68 7.77 -51.93 -0.40 0.27 16 43 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 44 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -30.00 351.89 -8.40 -38.39 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.95 Total: 9.86 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -2.31 Total: -28.41 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.59 Total: -35.74 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.00 -8.40 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397734234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.151 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds